RNA id: XM_036983301.1


Basic Information

Item Value
RNA id XM_036983301.1
length 2071
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110527833
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44056546 ~ 44069339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTGATGCCAACAAGCATTTGACTGATACACGCCTGGTGACGTTCAGCACCACGCTTTATAACTCGCAATTTATTTAAGACTGTTCTTTATTTATTTCCCTTGTTGCTTTGGCACACACGCCTCATCTCGAAAATATCTCGCTCCGTCGTGTGATATGTCAAATGAGCTCAGGACAATCCGACGAATGGTCCGATGAGTCATGTTGTCATGGGGAAAGATGCCGCGTTCACGTACTTTCCGCGAGTTATCTGGAGCTCCTAGTTCCAAATTGGAAATGTCATTTTAACGACCCTCTAAATGGTAATTACAGGGAAACTCGGAGAAATGTTTGTTTCCTACCATTTACCTTTTCAACCAAACTATGGCAACCAATCCAACCCTCCATGTACAGGATACTTCTTCTCTTGAGATGAATGCCAAGTTCTGATTCGTTGAACGCTGCATTTGTTTAACTACCACCAGTTAGCAAATCGgaaaaattatacattttttgtTCTGACTAGCCCTTGAAAGCAGCGTCAGTTTATTACAGACGCGTCAACGAGCAGACTTCGGAAGAAAAAAAAACGCATTGGCCACACAATGAGCAGATTCATGTACAAGGCAAAGTGTGTATTAACAGTTGCATTCTGTGCCTTTGTGCTGCTCTTCATAGCCTACTTCACACCCATGTCAGTAAGGTACTTGGAGGGGTTCCTTCCCATGAGCCGATGTCCTCAAGCCCCTGCAGAGAAGCTGAAGCTGGGGAACAGTATAGATGCCTCCCTAGACCTCTGGTCCAGAGGTGATGTTCAGACCTGCACTGACTGGGGAGCACCTGTGATCTGGGATGGGATGTTTGACCCAGATCATTACGACCAGGAGCACAGGAAGAAccactcatctgtctctctcactgtattcGCTGTGGGCAGGTATCTAGATGCCTACCTGAAGACATTCCTTCTCTCTGCTGAGCGTCACTTTATGGAGGCTTTACCTGTGACATACTATGTGTTCACGGACATTCCCGAGAGGGTACCAGACATCCATCTGGGTCCTGGGCGGAGCCTGAAAGTTGTGAGGGTGCAGAGACACTCTCGCTGGCAGGACATCTCCATGATGCGTATGAGGGCCATCGCAGATGCCATCGAGTCACGGATTCGTCACCACAGCCACTACGTCTTCTGCTTTGACGTGGACCAGGTGTTTGTGGGTCGGTTCGGCTCCGAGGCTCTGGGAGACTCTGTTGCTCTGCTCCACGCCTACTACTACCACCGACCACAGAGCCTGTACGCCTACGACCGCAACCCCAGGTCCAGGGCCTACATGGAGACTGGGGACTTCTACTATCATGCTGCTGTGTTCGGAGGCTCGTGGCGAACTGTGAAGAATATGACGGAGACCTGTTACCAAACCATCATGAAGGACAAGGAGAACCAGGTGGAGGCTCTGTGGCACGACGAGAGTCACCTCAACAAGTACCTGTGGCTCCATAAGCCCAGCAAAGTGCTGTCTCCAGAGTACTGCTGGGACAGGAACATTGGCTTCCGTGGTGACATACATGTGGCCCGCCTGCTCTGGTCAGAGAAGAAATATGGCACACTCCGGGTTACAGATTGAGTAATCAGAACCTGTGTGCAATAATCTAATGAGCAAAAGCCCCTGAAGCGTCAAACATGGTCCACAGTACAGAGCTGCGATAGTCTACAGCCCAATGTGATTTATGCCCATGCCTTGTTCAGAGCAATGAGGCTTGTAAATGTGTCACAATGGGCTGTCAGACTATTAGAGCTGTGAAACTGTGGAATTATTGGCTTGTGTGTTGAAACATGATCTTGCAAGTAGTACGTTTCTTGGTTCTCCTGTGTTGCTTCAGTTGTCTGGTGGTATTGTCTCTCCACCCACGAAGTCTGCTGTCTGTGGCTGGTGGGGATTGAACAAATGGGGAAATAGACTATGCTTGCACTGCTTCTTTTATATGGTTTATATTTGTGGATTAGAAGTAAAAATCTGTTTTCTAAAGTTGTATTAGATATTGGAAATTGTTTTTATGTATAATTTCTTTTACAAATAAAGAtggatacct

Function

GO: NA

KEGG:

id description
K20736 A3GALT2; alpha-1,3-galactosyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696122 lncRNA downstream 21702 44034496 ~ 44034844 (-) True G611423
TU695960 lncRNA downstream 287955 43768358 ~ 43768591 (-) True G611275
TU695898 lncRNA downstream 387625 43668413 ~ 43668921 (-) True G611215
TU695896 lncRNA downstream 388888 43666707 ~ 43667658 (-) True G611214
TU695818 lncRNA downstream 456428 43599887 ~ 43600118 (-) True G611167
TU696169 lncRNA upstream 66846 44136185 ~ 44178737 (-) True LOC110527840
TU696170 lncRNA upstream 119506 44188845 ~ 44191529 (-) True G611470
TU696186 lncRNA upstream 131209 44200548 ~ 44200845 (-) True G611486
TU696189 lncRNA upstream 136122 44205461 ~ 44205666 (-) True G611489
TU696199 lncRNA upstream 154112 44223451 ~ 44223726 (-) True G611499
XM_021609365.2 mRNA downstream 55981 43987288 ~ 44000565 (-) True si:dkey-264d12.4
XM_021609367.2 mRNA downstream 60547 43987288 ~ 43995999 (-) False si:dkey-264d12.4
XM_021609362.2 mRNA downstream 71149 43979881 ~ 43985397 (-) True fam83e
XM_021609363.2 mRNA downstream 72086 43979881 ~ 43984460 (-) False fam83e
XM_021609360.2 mRNA downstream 79577 43968908 ~ 43976969 (-) True utp3
XM_036983306.1 mRNA upstream 2270 44071609 ~ 44082952 (-) False znf362a
XM_021609375.2 mRNA upstream 2271 44071610 ~ 44083797 (-) True znf362a
XM_021609380.2 mRNA upstream 34495 44103834 ~ 44145946 (-) False LOC110527835
XM_036983311.1 mRNA upstream 34495 44103834 ~ 44145955 (-) False LOC110527835
XM_021609379.2 mRNA upstream 34495 44103834 ~ 44145958 (-) False LOC110527835
TU695139 other downstream 476582 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 519581 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 415516 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 415516 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 1805626 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3198984 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4417708 48487047 ~ 48529168 (-) True G616880

Expression Profile