RNA id: XM_021609400.2


Basic Information

Item Value
RNA id XM_021609400.2
length 2793
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110527847
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44467594 ~ 44524862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATCGTAGTGTAGGCGTCACACTAGCTGCATGCGTGCCTTGGCTGGTGCTTCAATTTAGAGTTTACATTCAcagcacacacgcactcacatacACCGAGCCATGGCTTCAGTGAGTGTGGTAGGACCAGGACAACATCGCTCGGCTCCCGACCACCAGCTAGTCTTTCATAAACTAAAGGCCGCCGGGAGGAATAAAATAACGTTACCGTGGAAATCATCCGTGGAGATCAACCTCGGGAAGAGCTCGATGACGCGGGAGTGCTGTTCGGTTTCGGCGGTATCAGCAGTCACAGCATCCCCACTAAACCCGTCCCTGACCCCAGGACAACAAGGAGCCGCAGCCGGGGTAGGAGGGGGGGATCCCGGGGTGAGGCGTGAGGCTCAGCGGGTGCTGGTGCCACGTagttcagacagagagagcgacagcagCAGCCCTGACTGTGGAGACACTACAGCGGCGAGGGAGAAGGACACTGGTCAAAGCGGACGGAGCGGCAGCGGGAATGACTCAACCCGTGATCGAAGGAGTTCCCTGAAGATCCTTACAAATGTTATGTCAAGCACGTCAGCTAACACACAGATGACAGACGTCAAGTGTGACAGATCAAGCGCGCCAACAAACGGACACATGGGAGCACACTCACGTCGGGACCGTCCGGTCAGAAGGCGCGCATCCCACAGCCCCAATGGTCAGACCACCAGGCTGGTGACCAAAGGGGACATCGGGGGACCACCGCTGGAGCGGTTGACACAGGGAAGGACCGGGGTCGTTAAACTCGCGCGCACAGAATCCCACCGAAGGGAGGTCTGGTCAATATTTGGCGAGCAGGAGAACGCGCGCGTGCGGTTGGAGACAGGAGAGGGCCACACGTTTGGGACCAGAACCGTGACTCGGGACTGGTGCGACGTCTGTAACCAGCAGATCAGTGTTCAGCAGGCGCTCAAGTGTAAAAACTGCAACTACACCTGTCACCAGGAGTGTGGCGGGCGGGTCCAGCTGGACTGCAACCAGAGAGACAGCAACCCACGGGAAAGGACATCTCCCAGAAGACACTGCTCCACGCCTCCTCAGTACAAGCAGAAAGAGGTCGAAGAGGAGAGAGGGCCCAAGGCTCTGTCAGAGGAAGAATTACGGGCCAAGATAGAGGACTACAACTCTACGGTCTCAGAGAATGGCATGAAACTGgGTGCTGATGGTTTGTACACTGGCTTCATTAAGGTCCACCTCAGACTAAGTCGACCAGTCACGGTGCTTGCTGTGGAGGGGACGGGATTAGACGGCCAGGCGGAAAGACGGCCAATGACTGTGTCAGAGGGCCAGGAGGGGGCGGGAGCAGGGTTCAGTGAGAAGCGGACGTCGTTCTACCTGCCCAGTGACTGTGTGAAGCAGATCCACATCAGTAGTACTACCACAGTCAGGGAGGTCATACAGGGCCTGCTGAAGAAGTTTATGGTGCAGGATAACCCACGCAAGTTTGctctatacagacagacacaccgcgATGGACAAGATCTGTTCCAGAAGCTTCCTCTTGTGGAGTGTCCTCTCGCTCTGAGACTGGTGGTGGGTCCAGATCCTGAGCTGCTCAGCTTTGTCCTCAAGGAGAACGAGACTGGAGAGGTGGAGTGGCATGCGTTCTCGGTTCCTGAGCTGCAGAACTTCCTGGTGATTCtggagaaggaggaggcagaGCGTGTGCGATTGGTGGAGCAGAGATTCGCAGTCTACCGACAGAGCTTGCAGAAGGCATTACGGGAGGATCAACCCTGACCCCTCACCCTTCATCTCTCACTCTGACCTTTCAACCCTCACCTCATCTCTTTTGACCCAGGGAGAGACAGGAGCCCACTGAGGCTTAGATTACTATTCTCCCCTCAGGACACGGGCAGCCCCTCCCTCACTTCTCACATCCCCTCTGGAGAAGGGAGGCGGGGTTGAGAAAGCACGGAAAGGGGAAAAGGGACTGTTTGAGGGATGAGTGGATAGGATGCTAGAACAAAAGAAGTCTGTGCATCCCTGTGAGTAAAAAGACACTGAACTGAAGGACCGAAGGTCTGACTTCGTTGGGGCTCAGATATCTTGGTTTGATCTGACAATCTGACCTGATGGGTCTTCTACTGTTACTTTGAATCTCAGTTTGGTCTGAGAATGTTTTGAAGAttctactgctgctgccgctgctACTGCAAGTGTTGCTTACGCATGAGTCTCACCTTGCTCTATCTGCCCCGGTGCCCATGCATAAAGATTTAGGACCAGAACAGACATTACTATTCAAAGCAACGCTCCATGGTGGGTGGACCATTTGAAATGTTCCGTTACTTGATGTTTATTATATCAACTCTCATGTTGTCCCTGCATGCCTTCTGTCCAAGGCTGAGGGTAGGATGGGGGGGTTGTCATGGTTGGATTGGGAAGCAGGGTTGGTATGGTGGGGTACATCTGTGTAGGGTTAGGGTGTGGAAAAAGGAACACCAGAATCCATTCTCATCTTCAGACTCCTCTCATATCAGTCCCAGGGATGTACAGCAGTGTTTCTCATGGAACCACTCTATTAAGCCCAGAAGGCTACAGAATCGTAAGAAGACTTGAACATCTCTGTCCTAACTTCTTTATCCAGCACTGAAATGAACCCTCTATCTCAGGCGGCTAACTTGCACTTAACCCTGCATCTCACTCTACCAGAGTAGCCATGCTAGTGTGGGAGGTCTTGTGCAGACAGACGTGTATTTCGTAGGTAGATGTTATTCCCATCTCTTCAGACAGCCATTTGTGTACCCTGACAGCAgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695731 lncRNA upstream 6413 44460857 ~ 44461181 (+) True G611087
TU695722 lncRNA upstream 26152 44440876 ~ 44441442 (+) True G611081
TU695721 lncRNA upstream 27437 44439829 ~ 44440157 (+) True G611080
TU695720 lncRNA upstream 28168 44439220 ~ 44439426 (+) True G611079
TU695719 lncRNA upstream 29214 44437078 ~ 44438380 (+) True G611078
TU695723 lncRNA downstream 106 44520557 ~ 44524862 (+) True LOC110527847
TU695771 lncRNA downstream 9315 44529766 ~ 44530016 (+) True G611127
TU695805 lncRNA downstream 67145 44587596 ~ 44587959 (+) True G611157
TU695809 lncRNA downstream 69716 44590167 ~ 44590395 (+) True G611161
TU696474 lncRNA downstream 109299 44629750 ~ 44629961 (+) True G611750
XM_036984483.1 mRNA upstream 3397 44450586 ~ 44464197 (+) True LOC110527112
XM_036983320.1 mRNA upstream 18360 44321639 ~ 44449234 (+) False LOC110527111
XM_036983321.1 mRNA upstream 18360 44321639 ~ 44449234 (+) False LOC110527111
XM_036983322.1 mRNA upstream 18360 44395837 ~ 44449234 (+) True LOC110527111
XM_021609396.2 mRNA upstream 177291 44277077 ~ 44290303 (+) True slc45a1
XM_036984433.1 mRNA downstream 7459 44527910 ~ 44535089 (+) True LOC110528955
XM_021609406.2 mRNA downstream 14773 44535224 ~ 44540487 (+) False LOC110527848
XM_021609407.2 mRNA downstream 14773 44535224 ~ 44540487 (+) True LOC110527848
XM_021609410.2 mRNA downstream 25803 44546254 ~ 44551269 (+) False ift52
XM_021609409.2 mRNA downstream 25882 44546333 ~ 44551269 (+) False ift52
TU695458 other upstream 439366 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 460687 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 635714 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 882698 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1056788 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1758283 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2111671 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3318937 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4306376 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5051869 49572320 ~ 49620168 (+) False tafa4b

Expression Profile