Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034147 |
| length | 880 |
| RNA type | processed_transcript |
| GC content | 0.42 |
| exon number | 7 |
| gene id | XLOC_017117 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 5106568 ~ 5120937 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006707 | cholesterol catabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0033781 | cholesterol 24-hydroxylase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-464 | Predicted to enable cholesterol 24-hydroxylase activity; heme binding activity; and iron ion binding activity. Predicted to act upstream of or within cholesterol catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CYP46A1 (cytochrome P450 family 46 subfamily A member 1). |
| ensembl_id | ENSDART00000131103 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00034142 | lncRNA | upstream | 48616 | 5051189 ~ 5057952 (+) | True | XLOC_017113 |
| TCONS_00034136 | lncRNA | upstream | 788095 | 4311851 ~ 4318473 (+) | True | XLOC_017108 |
| TCONS_00034135 | lncRNA | upstream | 794347 | 4309521 ~ 4312221 (+) | False | XLOC_017108 |
| TCONS_00034134 | lncRNA | upstream | 798833 | 4304457 ~ 4307735 (+) | True | XLOC_017107 |
| TCONS_00036367 | lncRNA | upstream | 1179648 | 3925357 ~ 3926920 (+) | True | XLOC_017100 |
| TCONS_00036542 | lncRNA | downstream | 1100767 | 6212810 ~ 6214789 (+) | True | XLOC_017124 |
| TCONS_00034179 | lncRNA | downstream | 2215448 | 7327491 ~ 7351711 (+) | False | XLOC_017136 |
| TCONS_00036368 | lncRNA | downstream | 2215584 | 7327627 ~ 7350653 (+) | False | XLOC_017136 |
| TCONS_00036543 | lncRNA | downstream | 2421673 | 7533716 ~ 7540142 (+) | True | XLOC_017139 |
| TCONS_00036369 | lncRNA | downstream | 2789913 | 7901956 ~ 7902288 (+) | True | XLOC_017142 |
| TCONS_00034144 | mRNA | upstream | 12145 | 5074118 ~ 5094423 (+) | False | XLOC_017115 |
| TCONS_00034145 | mRNA | upstream | 15469 | 5074123 ~ 5091099 (+) | True | XLOC_017115 |
| TCONS_00034143 | mRNA | upstream | 36244 | 5065268 ~ 5070324 (+) | True | XLOC_017114 |
| TCONS_00034141 | mRNA | upstream | 210213 | 4885298 ~ 4896355 (+) | True | XLOC_017112 |
| TCONS_00034139 | mRNA | upstream | 292470 | 4793516 ~ 4814098 (+) | False | XLOC_017111 |
| TCONS_00034149 | mRNA | downstream | 20095 | 5132138 ~ 5138768 (+) | False | XLOC_017118 |
| TCONS_00034150 | mRNA | downstream | 20165 | 5132208 ~ 5145333 (+) | True | XLOC_017118 |
| TCONS_00034152 | mRNA | downstream | 450999 | 5563042 ~ 5700369 (+) | False | XLOC_017120 |
| TCONS_00034153 | mRNA | downstream | 451999 | 5564042 ~ 5957633 (+) | False | XLOC_017120 |
| TCONS_00034154 | mRNA | downstream | 451999 | 5564042 ~ 5965307 (+) | False | XLOC_017120 |
| TCONS_00034146 | other | upstream | 31514 | 5074924 ~ 5075054 (+) | True | XLOC_017116 |
| TCONS_00034116 | other | upstream | 2197903 | 2908551 ~ 2908665 (+) | True | XLOC_017093 |
| TCONS_00034086 | other | upstream | 3713913 | 1385749 ~ 1392655 (+) | True | XLOC_017071 |
| TCONS_00034041 | other | upstream | 4788463 | 262995 ~ 318105 (+) | False | XLOC_017045 |
| TCONS_00034151 | other | downstream | 311919 | 5423962 ~ 5424096 (+) | True | XLOC_017119 |
| TCONS_00034155 | other | downstream | 561987 | 5674030 ~ 5697001 (+) | True | XLOC_017120 |
| TCONS_00034160 | other | downstream | 1223253 | 6335296 ~ 6335411 (+) | True | XLOC_017125 |
| TCONS_00034173 | other | downstream | 1807705 | 6919748 ~ 6919864 (+) | True | XLOC_017131 |
| TCONS_00034180 | other | downstream | 2215770 | 7327813 ~ 7331330 (+) | True | XLOC_017136 |
