RNA id: TU695723


Basic Information

Item Value
RNA id TU695723
length 4251
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC110527847
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44467594 ~ 44524862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATATACCCAATAGATATCCACCCTGTTATTCATTAACCCATTCTACGTAAGCATACAGAACGTAAACAATCAAAACAAGTAAGCATTCCTTCACTGCTTGAACCGTCTGCTGGTGTTTTAAGCATTTACAAACAGCTCAATGGGATGTTGATGTTCTGATTCTCCGTGAACTGTTCACCCTGTCATCAGTAACCCCCGACCCCTATCTCCTAACCTGGAAATGGACATTTCGTCTGATGGGAGACGTGCCGTGctgctgtgtctgtgtagagCGTATGCAGCTGTAGCTACTGTTGTTAGAGGCCTGTTAGAGCCAGCCACTCTGTGCTGCTGTGACAGGCCCATGAAGCCCTGCCACTGAGCCGACTGTTACGGGACTGAGTGAATGAGAGGAACTGATGCTTAAACACTGACTGGAGTTCAAGGGTCATACCGCGAGGAGGTACTCCTGGTCAGTTCATgtgatcaggaaaaactcctgtccGTATTGTTCATTGAGAAACACCATTCTGTTGATCACACCCAAGTTAAGAGGGACGAGAACcctgtgtccctctctccccAGAGGTAGTGGGATATCTGACTGGAAATAGGACTTATTGTAGAATAAACAAACTGATTCTGGCCACAGGTCTGTAGTATCCTAGAGAAGGGGCATGAAATTAGGCATGAAATTAGTGATACTTTTGTAGAAATTGAATTTTATCGTACCAATGATGTTGATCTGAGTGTGacgcatacagtgcattcagaaagtattcgtaccccttgacttattccacatgttgttgtgttacagcccgaattcaaaaatggattcaatattttctctcatccatctacacacaatgtccCACAAGGGCAaagagaaaacatgtttttagaaatgtttgcaaatgtattgaaaatgaaatgcataaatatttcatttacataaatattcacacccctgagtcataCGTTgtagaagcaactttggcagtgacgacagtctttttgggtaagtctctaagagcttggggcctcatttatcaatcaCGCAGATGCACAAATCTGTGTGTAAAGCATACATAGAGTCGTTTCCACACAGTGTGAGATTTATGAATATGAACGCTTGCTTGAGTGTGCATAAATTTATGCACGACCATGATCATGCTTTACGCACAGTGCCAAATGCTGGAATATGGGAACTGCTTGTTGAGTGTAGAATGGGGAAAATATACGTTGAAAATGTGTGACATTATTTGAGTAttaattaaatcatttttttatttcattgtATTTCCATTGTGGATTTATGCAACATACGATATCATTTGACCGCATCAGTACACGTGTTTCGATAATAATCCATATAAAGTACAGTCGTTTGTTAAACTATTTCGAACATTGTTGAAATGCTATAAAAGCCTGAGCTAATGCAAAATGGAAAGAGTGTTGGCTGATCCTGCTCGGTTTGAAGATTAGGCACACGCTGCATTTTGTAGAGACGGGTGGGACCTTTTCCGCAGAAAGTACAGATTGGCTCATCAGATATCATTGAATTTTGAGAGGATTTAAGACCTCCTTTAAAAAGGGTGGTTGGCAACGGGTACTTTTCTGCTGTGGGGGCTTGCCGTTCGGCATCTCACAGCCCTTGATGAGCCAATGTTTTGGATGAAGTCATCAGCAAAACTTAGCTACACATACAAGTTCCATACACCATCGCACAACACATTGATGTCAAGAGGGCTTTCTTTGCCATGATGCCAACAACGGGTTCCCGAATAGGAACGGAGCAATAGACGGCACCCACATTGCCATCAAATTACCATCCCAAAACTATTTCAACTATGTGAACAGAAAAGGCTTCCACTCTTTATGTGCAGGTTATATGATGCGCAAAAGACGCTGCTGAATGTGGTGGCAAGGAGGAACGCACGACTCGTTCATTCTGCAGAACAGCGATGTTGGCCTATACGCCTGCCCGAGGGAGCTGTGGAAGATGGATGGCTTATTGGTTAGTGTTACCTACTTATTTTAAGTATATTTGCCATTGCTAAAGCAACTTGAATTGTCATAATGGTCCTCTTTTGTagccatgttttttttgtttgtttactggtTAAGCCACAACTGAGCGAGCCAAATAAAATATTTTGGTTGTACTCActctgacactagcacctcttTTTCAGTCTCAGagatttttcttcttctttgccTTTTTTGGTTAGGCTGTTGTATTTCATGGTATGGGGTTGTATATTCCATTATTTAACGTGATGCTTTTGAAATGTGGTTTGCATTTGAAAATGACCCTAATTAAACGTTGTTTAATTATGTTTATTTAGGGGCATTTTGAAACGCAAACCACCAAGGTCGTGCAAGAGCACTGAGGCTGAGAACAATTGGTATTTATAAACGGTTTATCTCCTACCAGTGTGCATGTGATGCTCGTAGGATTGTTTGATGAATCACACCGTTTCTATGCATACACCATTCTAAATTCAGTTTGTAAATAGTATTTTAGAATAGTTTCTACGCAatattgataaatgaggcccttggaatgtacaatatttgcccatttattattatttttaattattcaagctctgtcaacttGATCGTTGATCattcattgctagacagccattttcaagtcttaccatagaaagcaggttttcctctcgATTTTTCCTGTGCTCGTAGCtgtattccatttttttttttttttttttaaaacagggtttcccaaactcggtcctcgggaccccaactaatcatcaagccggAGGACAAAGTTTGGAAAACGCTGCCAggccttgccgatgacaagcatacccatagcatgatgccgccaccaccatgcttgaaaatatgaagagtgatactcagtgatgtgttgtattggatttaccccaaacatagcgctttgtattcaggacaaaaagttaatttctttgccacatgttttTAGTGCCTTgctacaaacaggatgcatgctttggaatatttgtattctgtaccggctttcttcttttcactctgttttttaggttagcattgtggagtaactacaatgttgttgatccatcctcactttGATCATATCCCACCATTAAACTCGTAACTGTTTTAACAtctccattggcctcatggtgaaatccctgagcagtttcattcctctccggcaactgagttaggaaggacgcctatctttgtagtaactgggtgtattgatacaccatccaaagcctaattaacagcttcaccatactcaaagggatattcagcaattgctttttattttgtatttacccatctaccaatagatgcccttctttgcgaggcattgaaaaacatccctggcctttgtggtttaatctgtgCTTGACATTCATTACTCGATTGAGGGAccctacagataattgtatgtgtgtggtacagagatgaggcagttATTCAGAAATCATTAACCACTATTGTTGAACACAGAGTCTATCCAACTTACTGTGCGATTCGTGAAGCACATTTTTACCCGTGCCACAATAAatggaatacttattgacttaagacATGTCATCTTTTAATTTTgtattcatttaaaaaatgttctaCAAACAGAATTATACGGTGTTGGTCAGTGAcgcaaaatctaaatgtaatcttgtttaaattcaggctgtaacacaacaaaatgtgggaaaagtcaatactttctgaaggctctgtaagtaACCATTGGAGGATAAATTATTAACATTGGTTATAATGATTGTTATCATTGGTGTGTCTAAAATAGTCTAAAAAATGATATGAGAGTTAATACCGATGTATTCCAATGAGTCTCTATCATCGTCCAAAAGCACATGCCTTCCTGATGCAGAGAGCCCAAAAGAAATGCCCATGTCCATCCCATCCTCTTACCTCCTCAACCCcttataacccaaccctaaccttctCAATGTTCAGGCTGTTCCTGCTGGCAGTGCCTTTTGTTCTATgtagccttgtgtgtgtgtgtgtgtaactgggtTCTTTCTATATGTCGTATCTCTTTTCCTTACCAACTATTTCTGTCctttatcaccccccccccccccccctcctattcCTGCCCTCACAGGGCATATAGAGAGGCCAcgcaaacagatctgagaccagacTACATGTCTGTGATGGAACCCATAagaatgtgtgtctgtctgtttgtgtctgttacATCTgcgtgtgttatttattttacGTTTCACCCCCTTCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695768 lncRNA upstream 1545 44518760 ~ 44519012 (+) True G611124
TU695764 lncRNA upstream 6577 44513747 ~ 44513980 (+) True G611120
TU695755 lncRNA upstream 17585 44502754 ~ 44502972 (+) True G611111
TU695752 lncRNA upstream 22188 44497827 ~ 44498369 (+) True G611108
TU695749 lncRNA upstream 27549 44492809 ~ 44493008 (+) True G611105
TU695771 lncRNA downstream 4904 44529766 ~ 44530016 (+) True G611127
TU695805 lncRNA downstream 62734 44587596 ~ 44587959 (+) True G611157
TU695809 lncRNA downstream 65305 44590167 ~ 44590395 (+) True G611161
TU696474 lncRNA downstream 104888 44629750 ~ 44629961 (+) True G611750
TU696550 lncRNA downstream 250868 44775730 ~ 44778089 (+) False LOC110527864
XM_021609400.2 mRNA upstream 106 44467594 ~ 44520451 (+) False LOC110527847
XM_021609401.2 mRNA upstream 106 44467594 ~ 44520451 (+) False LOC110527847
XM_021609402.2 mRNA upstream 106 44485485 ~ 44520451 (+) False LOC110527847
XM_021609403.2 mRNA upstream 106 44503792 ~ 44520451 (+) False LOC110527847
XM_021609404.2 mRNA upstream 106 44503793 ~ 44520451 (+) False LOC110527847
XM_036984433.1 mRNA downstream 3048 44527910 ~ 44535089 (+) True LOC110528955
XM_021609406.2 mRNA downstream 10362 44535224 ~ 44540487 (+) False LOC110527848
XM_021609407.2 mRNA downstream 10362 44535224 ~ 44540487 (+) True LOC110527848
XM_021609410.2 mRNA downstream 21392 44546254 ~ 44551269 (+) False ift52
XM_021609409.2 mRNA downstream 21471 44546333 ~ 44551269 (+) False ift52
TU695458 other upstream 492329 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 513650 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 688677 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 935661 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1109751 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1753872 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2107260 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3314526 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4301965 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5047458 49572320 ~ 49620168 (+) False tafa4b

Expression Profile