RNA id: XM_021609410.2


Basic Information

Item Value
RNA id XM_021609410.2
length 2237
RNA type mRNA
GC content 0.45
exon number 14
gene id ift52
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44546254 ~ 44551269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGTTACTCTTGTGGATCAGTTTTGTACCCACAATGCACCATTTTCCACTGGAAGATGGTTTCTTGAGGTCTTTAAATAGAAGTTAACATACAATGGAGAAGGAGCAGCGCAGCAGTGTTGTTTTTAACGCATCCAAGAGAGAACTGTTCACTGCCAACAATGGTTACAAGTCCCTGCAGAAGAGACTCAGGGCACAATGGAAGATTCAGAGCATGAAAGAGGAGCTCTCCTTGGAGAAGTTGAATGGTGTGAAGTTGTGGATTACTGCTGGCCCCAGGGAAAAGTTCACTGCAGCTGAGTTGGAGGTCCTGAAGCAGTACCTGGATGGGGGAGGAGATGTCCTTGTGATGCTGGGTGAAGGAGGGGAGATGAAGTATGACACCAATATCAACTTCCTTCTTGAGGAGTTTGGGATAATGGTCAACAATGATGCTGTCGTGAGGAATGTATACTACAAGTATTTCCATCCAAAAGAAGCACTTGTGTCCAATGGTGTTCTGAACAGAGAGATCAGTCGGGCTGCAGGCAAAGTGGTGACAGGGATCATCGAAGATGAAAGTGTCGGCAACAATGCACAGGCCCTCACATTTGTGTACCCGTATGGAGCGACACTGAGCGTGATGAAGCCTGCTGTGGCTGTTCTCTCCACTGGGTCCGTCTGCTTCCCCCTCAACAGGCCTGTCCTCGCCTTCTATCAGGTCAAGGAGGCAGGCAAACTGGCAGTGATGGGGTCCTGTCACATGTTCAGTGACCAGTACCTGGACAAAGAGGAGAACAGTAAAATAATGGATGTCGTTTTCCAGTGGCTCATGGGTGATAACATTATTCTGAACCAGATAGATGCAGAGGACCCCGAGATCACAGATTACACCATGCTGCCAGACACAGGCTGCCTGTCTGAGCGACTGCGAGTATGCTTGCAAGAGGGAGAGGAAAATCCAAGAGACTTTACCTCCCTGTTTGACATGTCTCTACTTAAACTATCAACAAACACGTTGCCCCAAGTCATCAGTTCCTACAAGCAGATGAATGTCAAACACGAGCCTCTCCAGCTGATCACACCTCAGTTTGAGACTCCCCTTCCACAGCTGGAGCCTGCTGTCTTCCCGCCTGCCTTCAGGGATCTGCCTCCCCCCATGCTTGACCTCTTTGACCTGGATGAAACCTTTTCTTCTGAGAAGGTGCGTTTGGCACAGCTCTCCAACAAATGCACAGACGATGATCTAGAGTTCTACGTGAGGAAGTGTGGGGACATCTTGGGGGTGACGGGGAAGTTGGATAAAGATCAGAGAGATGCCAAACACATCCTGGAGCACATCTTCTTCCAGGTCGTGGAGTTCAAGAAGCTCAATCAGGAACATGATCTTGACACAGAGACCAGGTTTTCCCCGTTCTGAGGAATTGCAACCAATGAGGTTGCAATTTGATGTATTTTTCATGGGCTTGTATATACCTACATTCAATCTAGATGTATCCATATCATTTTCCCAGTAACTACAAGAATGTAACTCCCCAGCCTTTAAACAGAATGTATATAGTTGATTAGATTAATGTACTAAATCTGACAAGTGAAATTAATATTGTATACGGCTTTCCATATCTGATTGATTACTTGTGGTAAAGGATGACACATTTAGGCATTTACTGTGTAAAGTGTTCCATCATTTCCTCAATGCGTGGTTGATTTAATcaatcaaaaaaaaaatgtatttactatAATAGAttgtaaaatatacattttcttcAGACTGGCATCTTCTTGTGTCCCTTTGTCTGTAAAAGTGAAATTAGAGAACATGTCAATATACCAGCCATTAAACAACCACTGGAGTCTTAGTTGCCCAGccataaaacaaatatatacactTTTAATTAGGAAATAGCATGCCAAAGTGTGGTCCACTTTCACCAAAATGACTTTTTGCTGGCCAAGACACAGCAGCAGTTACTGAGCCTGAGAACCTTACCTCAATTGTTCAGTATAGCACTGTCACATGACCACTTTGGCTTGTTCAGTCTTACCAACACTGGCTAGCTACTCGTCCATGTTTTTGGGTCAATTATTGAACGGTTGCCCAATTATGCAACTTGTATTTAATCTGCTAGTTGATGAGCAACTTCACCAACAAGGCAACTGCCAACAGCAATGATGGGAGGGggcagtggcgtgtattcatggaccCAAGGGAAGTCAGGCTTCCCCCAAAAAATTCACCAATAAAAAAATGATGTat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695771 lncRNA upstream 16238 44529766 ~ 44530016 (+) True G611127
TU695723 lncRNA upstream 21392 44520557 ~ 44524862 (+) True LOC110527847
TU695726 lncRNA upstream 24410 44520051 ~ 44521844 (+) False LOC110527847
TU695768 lncRNA upstream 27242 44518760 ~ 44519012 (+) True G611124
TU695764 lncRNA upstream 32274 44513747 ~ 44513980 (+) True G611120
TU695805 lncRNA downstream 36327 44587596 ~ 44587959 (+) True G611157
TU695809 lncRNA downstream 38898 44590167 ~ 44590395 (+) True G611161
TU696474 lncRNA downstream 78481 44629750 ~ 44629961 (+) True G611750
TU696550 lncRNA downstream 224461 44775730 ~ 44778089 (+) False LOC110527864
TU696551 lncRNA downstream 224461 44775730 ~ 44777995 (+) True LOC110527864
XM_021609406.2 mRNA upstream 5767 44535224 ~ 44540487 (+) False LOC110527848
XM_021609407.2 mRNA upstream 5767 44535224 ~ 44540487 (+) True LOC110527848
XM_036984433.1 mRNA upstream 11165 44527910 ~ 44535089 (+) True LOC110528955
XM_021609401.2 mRNA upstream 25803 44467594 ~ 44520451 (+) False LOC110527847
XM_021609411.2 mRNA downstream 3750 44555019 ~ 44576832 (+) True LOC110527850
XM_021609412.2 mRNA downstream 25878 44577147 ~ 44586594 (+) False rpn2
XM_021609415.2 mRNA downstream 25878 44577147 ~ 44586594 (+) False rpn2
XM_021609416.2 mRNA downstream 25981 44577250 ~ 44586594 (+) False rpn2
XM_021609414.2 mRNA downstream 26077 44577346 ~ 44586594 (+) False rpn2
TU695458 other upstream 518026 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 539347 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 714374 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 961358 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1135448 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1727465 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2080853 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3288119 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4275558 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5021051 49572320 ~ 49620168 (+) False tafa4b

Expression Profile