Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034149 |
| length | 1293 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 9 |
| gene id | XLOC_017118 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 5132138 ~ 5145333 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006707 | cholesterol catabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0033781 | cholesterol 24-hydroxylase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-051120-33 | Predicted to enable cholesterol 24-hydroxylase activity; heme binding activity; and iron ion binding activity. Predicted to act upstream of or within cholesterol catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. |
| ensembl_id | ENSDART00000081351 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00034142 | lncRNA | upstream | 74186 | 5051189 ~ 5057952 (+) | True | XLOC_017113 |
| TCONS_00034136 | lncRNA | upstream | 813665 | 4311851 ~ 4318473 (+) | True | XLOC_017108 |
| TCONS_00034135 | lncRNA | upstream | 819917 | 4309521 ~ 4312221 (+) | False | XLOC_017108 |
| TCONS_00034134 | lncRNA | upstream | 824403 | 4304457 ~ 4307735 (+) | True | XLOC_017107 |
| TCONS_00036367 | lncRNA | upstream | 1205218 | 3925357 ~ 3926920 (+) | True | XLOC_017100 |
| TCONS_00036542 | lncRNA | downstream | 1074042 | 6212810 ~ 6214789 (+) | True | XLOC_017124 |
| TCONS_00034179 | lncRNA | downstream | 2188723 | 7327491 ~ 7351711 (+) | False | XLOC_017136 |
| TCONS_00036368 | lncRNA | downstream | 2188859 | 7327627 ~ 7350653 (+) | False | XLOC_017136 |
| TCONS_00036543 | lncRNA | downstream | 2394948 | 7533716 ~ 7540142 (+) | True | XLOC_017139 |
| TCONS_00036369 | lncRNA | downstream | 2763188 | 7901956 ~ 7902288 (+) | True | XLOC_017142 |
| TCONS_00034148 | mRNA | upstream | 11201 | 5106568 ~ 5120937 (+) | True | XLOC_017117 |
| TCONS_00034144 | mRNA | upstream | 37715 | 5074118 ~ 5094423 (+) | False | XLOC_017115 |
| TCONS_00034145 | mRNA | upstream | 41039 | 5074123 ~ 5091099 (+) | True | XLOC_017115 |
| TCONS_00034143 | mRNA | upstream | 61814 | 5065268 ~ 5070324 (+) | True | XLOC_017114 |
| TCONS_00034141 | mRNA | upstream | 235783 | 4885298 ~ 4896355 (+) | True | XLOC_017112 |
| TCONS_00034152 | mRNA | downstream | 424274 | 5563042 ~ 5700369 (+) | False | XLOC_017120 |
| TCONS_00034153 | mRNA | downstream | 425274 | 5564042 ~ 5957633 (+) | False | XLOC_017120 |
| TCONS_00034154 | mRNA | downstream | 425274 | 5564042 ~ 5965307 (+) | False | XLOC_017120 |
| TCONS_00034156 | mRNA | downstream | 846561 | 5985329 ~ 6010136 (+) | True | XLOC_017121 |
| TCONS_00034157 | mRNA | downstream | 896659 | 6035427 ~ 6079923 (+) | True | XLOC_017122 |
| TCONS_00034147 | other | upstream | 20095 | 5106568 ~ 5112043 (+) | False | XLOC_017117 |
| TCONS_00034146 | other | upstream | 57084 | 5074924 ~ 5075054 (+) | True | XLOC_017116 |
| TCONS_00034116 | other | upstream | 2223473 | 2908551 ~ 2908665 (+) | True | XLOC_017093 |
| TCONS_00034086 | other | upstream | 3739483 | 1385749 ~ 1392655 (+) | True | XLOC_017071 |
| TCONS_00034041 | other | upstream | 4814033 | 262995 ~ 318105 (+) | False | XLOC_017045 |
| TCONS_00034151 | other | downstream | 285194 | 5423962 ~ 5424096 (+) | True | XLOC_017119 |
| TCONS_00034155 | other | downstream | 535262 | 5674030 ~ 5697001 (+) | True | XLOC_017120 |
| TCONS_00034160 | other | downstream | 1196528 | 6335296 ~ 6335411 (+) | True | XLOC_017125 |
| TCONS_00034173 | other | downstream | 1780980 | 6919748 ~ 6919864 (+) | True | XLOC_017131 |
| TCONS_00034180 | other | downstream | 2189045 | 7327813 ~ 7331330 (+) | True | XLOC_017136 |
