RNA id: XM_021609427.2


Basic Information

Item Value
RNA id XM_021609427.2
length 1468
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC110527861
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44623094 ~ 44624681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATATATAGGAGAGATGAAGCTAGTAGAGATCAGATTCTCTCTACACAGACCTCTACAGCACAGAGATCCAGCCATGGTACCTACAATCACTTCAACTATGATCTACCCTAAGGAGCACCTGAGTCTGACAAACAAGCTAAGAAAGCCAGTGGTGGAGAAGTTACGCAGAGATCGTATCAACAACAGCATTGAGCAGCTCAAGTCTCTCCTGGTTCCAGAGATCCTCAACCAGCAGTCCGACTCTAAGCTGGACAAAGCCGACATCCTGGAGATGACAGTTTGCTTCCTGAGACGACAGCAACAGAACCAGCCAGTGAGCTCCTCCTCCTGCTCAGCACCTGTCAATCAGGGTTACTACAGGTGTGTCCAAGAGATTGTTCACTTCCTTTCTAAAGATGATCAGAAGTCACAGTCCCAGAGAAGACTGCTGCGACACTTCCAGAGCCTGCAGCCATCCTCTGATAAGAACAGGAGGGAGATTGACGGTCCTCAGCTGAGCTCCCCAGCCCAGCACAGCGTCAGAAAAGAGAAGAGTCCAATCAACATCGCCCCCTGGAGGCCCTGGTAGAGACCTACAGATTGGAGCTCCACTCAGACAAACACAACGGATGGACCATGTTGGTCTAAGATTAATTTCATGGACAGTAATGAGTATAATAAAATATATTCTTCATCTTCTGCTTATGCAGGAGTTTTTTAAGTCTTGCTGTGAGACGTTTAATTAAAGTTGTACTGAACAAGTTAACGTTCTCTGAGAAAATGATCAAATCGATCATTTAAATAACGTTAATGTTTTGTGAAACGTGTTGATTATATTAATCTTGTTTTTATATTCATGATCAACAATAACTTTAACGCTCCTCCATGAGAACTTTTAACCCACAATAGATATTATATAATCAGTCTGTTTGTGATTATCTATGACTGATCTGTTTGAAGTTCAAAATGTATAAGACAAAAACCTATTACCTCTACATTTGTGTAGTGATATAGTCATATTGACATTGTATTGAGCATCTTCTGTGAAGCATGTATCAGTTATATATTTGATATTGATCAACTTGAGCTACAGCATCAATGTTCCTCCGTGAGGATTATTTACCCAAACTGGGTATTATACCTGCTATCATCACTCTGTGATTAacaatatttgatttgtttaaagatCGAACTTCATTTGTGAAATTATCGATCATGTTATTTGAATATGAATTTCATTGCAAATGGGAGAAAGAAATGTCTAATTGAAAAACCCTTGTTTATTTTAAACAATTCTGTTGTCTTTTATAAAGACAGTAACTTTGTATGCAATACTCTGATAGAGTATCATGTATTGGATATTTGTTCAAGTTCTTGCTGTGATGTTTAATCACTTTATTTCTGTTGAAATATTTACCTGACGCTAAGGTTTTGGTGGTGTGACTCATTCAGTCTGTCTGAATAAATACACACATCTTCAAGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696481 lncRNA downstream 15746 44606887 ~ 44607348 (-) True LOC110527856
TU696450 lncRNA downstream 46597 44576237 ~ 44576497 (-) True G611730
TU696416 lncRNA downstream 93865 44528931 ~ 44529229 (-) True G611696
TU696414 lncRNA downstream 95813 44527080 ~ 44527281 (-) True G611694
TU696413 lncRNA downstream 96374 44526017 ~ 44526720 (-) True G611693
TU696499 lncRNA upstream 9101 44633782 ~ 44633990 (-) True G611767
TU696505 lncRNA upstream 9665 44634346 ~ 44640269 (-) False G611768
TU696501 lncRNA upstream 10112 44634793 ~ 44640269 (-) False G611768
TU696503 lncRNA upstream 10112 44634793 ~ 44640269 (-) True G611768
TU696606 lncRNA upstream 33056 44657737 ~ 44658705 (-) True LOC118936679
LOC110527855 mRNA downstream 9466 44612093 ~ 44613628 (-) True LOC110527855
LOC118965287 mRNA downstream 12762 44608797 ~ 44610332 (-) True LOC118965287
LOC110527856 mRNA downstream 15762 44606061 ~ 44607332 (-) False LOC110527856
NM_001124585.1 mRNA downstream 20171 44595759 ~ 44602923 (-) True lbp/bpi-1
XM_021609418.2 mRNA downstream 32696 44586310 ~ 44590398 (-) False ghrh
XM_021609424.2 mRNA upstream 3207 44627888 ~ 44629712 (-) True LOC110527858
XR_005052585.1 mRNA upstream 32778 44657459 ~ 44658756 (-) False LOC118936679
XR_005052586.1 mRNA upstream 32778 44657459 ~ 44658756 (-) False LOC118936679
XM_021609440.2 mRNA upstream 178328 44803009 ~ 44930031 (-) False cntn4
XM_036983332.1 mRNA upstream 178328 44803009 ~ 44930389 (-) False cntn4
TU696391 other downstream 137342 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 137689 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 1043130 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 1086129 43526691 ~ 43536965 (-) False LOC110527816
TU698246 other upstream 1250284 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 2643642 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 3862366 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 4559743 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 4559743 49184424 ~ 49186096 (-) True G617624

Expression Profile