RNA id: XM_021609424.2


Basic Information

Item Value
RNA id XM_021609424.2
length 1707
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110527858
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44627888 ~ 44629712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatataaatagtatatGAGTACAGATAACaccccaaaactacttaagtagtacttgaaagtatttttacttaagtatttacAGCACTGTAGGTACTAGATTGCCTTATAAACCAATCCCCTCCCTTGCTTGCTGTGCAAGGGCACAGCCAGTGGGGCTTTGTGAGAGCAGACACACTTCTATTGTGTGTCAGGGCTCAGCAGACGGCATGCAGAAGTGTGGGAAGCCGTGTGTCCCTTTGGCTCCCAGCTCCAGGAAAAGGAGGGCGTGTGACTGGGGCAAGTTCAGCGTAATGCAGGGAGCCAGCTGTGCTGTGGAGCTCAGAGGAGGGACGTTTGCTGCCTGGGGCTTCTATGAAACGTGAGCCTGTATACAGACAGAAGATCATCATCGCCTCAGAGTTGCTGCACTTAGATGGAGTCACATTAGCTCGGAGGTAATCTGCTAGAGACAGATCGGTGTGAAATGACTCCAATCTGATTGATACTATTTCTCAAAGACTGTCAGCAAAAACTtgaacaaaaatgaaatacaATTTCAGTAGCCAACAAGCATTTTATATAATGTGCTGTATTCCGAAAACATTTTAGAGACTTGTCAGTCTCACACGTGTAAGTTGTAATAATGAGGAGTGTGCTCTGTCAGTGTCATTGATCCCAACAACAGGCTGCAGATCTAGAGGTCACCACTTTCCCAGATTCACACAGCGCTCTGTCAGTCACTCTCCATCACCCCACCCCTCCACCTAGTCTCCTGAGACGTGACCATTGTCCCCCAGCAATAAGAACACTGAGCATGTGGCAGCTCCACACTCCCCACTGTCCTCCCAAGCTCTCCCATTGGCTACAGACTGTGAGAAACTCCAACAAGCCCAAGACCCACACATTCATATGTAGATTTGGGACAATATATAGGAGAGATGAAGCCAGTAGAGATCAGATTCTCTCTACAAAGACCTCTACAGCACAGAGATCCAGCTATGGTACCTACAATCACTTCAACTATGATCTACTCTAAGGAGCACCTGACTCTGACAAACAAGCTAAGAAAGCCAGTGGTGGAGAAGTTACGCAGAGATCGTATCAACAACAGCATTGAGCAGCTCAAATCTCTCCTGGTTCCAGAGATCCTCAACCAGCAGTCCGACTCTAAGCTGGACAAAGCCGACATCCTGGAGATGACAGTTTGCTTCCTGAGACGACAGCAACAGAACCAGCCAGTGAGCTCCTCCTCCTGCTCAGCACCTGTCAATCAGGGTTACTCCAGGTGTGTCCAAGAGATTGTTCACTTCCTTTCTAAAGATGAGCAGAAGTCACAGTCCCAGAGAAGACTGCTGCGACACTTCCAGAGCCTGCAGCCATCCTCTGATAAGAACAGGAGGGAGATTGACGGTCCTCAATTGAGCTCCCTAGCCCAGCACAGCATCAGCAAAGAGAAGAATCCAGTCAACATCGCCCCCTGGAGGCCCTGGTAAAGACCTACAGATTGGAGCTCCACTCAGACAAACACAACGGATGGACCATGTTGGTCTAAGATTAATTTCATGGACAGTAATGAGTATAATAAAATATATTCTTCATCTTCTGCTTATGCAGGAGTTTTTTAAGTCTTGCTGTGAGACGTTTAATTAAAGTTGTACTGAACAAGTTAACGTTCTCTGAGAAAATGATCAAATCGATAATTGAAATAAGTTCATGTTTTGTGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696481 lncRNA downstream 20540 44606887 ~ 44607348 (-) True LOC110527856
TU696450 lncRNA downstream 51391 44576237 ~ 44576497 (-) True G611730
TU696416 lncRNA downstream 98659 44528931 ~ 44529229 (-) True G611696
TU696414 lncRNA downstream 100607 44527080 ~ 44527281 (-) True G611694
TU696413 lncRNA downstream 101168 44526017 ~ 44526720 (-) True G611693
TU696499 lncRNA upstream 4070 44633782 ~ 44633990 (-) True G611767
TU696505 lncRNA upstream 4634 44634346 ~ 44640269 (-) False G611768
TU696501 lncRNA upstream 5081 44634793 ~ 44640269 (-) False G611768
TU696503 lncRNA upstream 5081 44634793 ~ 44640269 (-) True G611768
TU696606 lncRNA upstream 28025 44657737 ~ 44658705 (-) True LOC118936679
XM_021609427.2 mRNA downstream 3207 44623094 ~ 44624681 (-) True LOC110527861
LOC110527855 mRNA downstream 14260 44612093 ~ 44613628 (-) True LOC110527855
LOC118965287 mRNA downstream 17556 44608797 ~ 44610332 (-) True LOC118965287
LOC110527856 mRNA downstream 20556 44606061 ~ 44607332 (-) False LOC110527856
NM_001124585.1 mRNA downstream 24965 44595759 ~ 44602923 (-) True lbp/bpi-1
XR_005052585.1 mRNA upstream 27747 44657459 ~ 44658756 (-) False LOC118936679
XR_005052586.1 mRNA upstream 27747 44657459 ~ 44658756 (-) False LOC118936679
XM_021609440.2 mRNA upstream 173297 44803009 ~ 44930031 (-) False cntn4
XM_036983332.1 mRNA upstream 173297 44803009 ~ 44930389 (-) False cntn4
XM_036983330.1 mRNA upstream 173297 44803009 ~ 44930511 (-) False cntn4
TU696391 other downstream 142136 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 142483 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 1047924 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 1090923 43526691 ~ 43536965 (-) False LOC110527816
TU698246 other upstream 1245253 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 2638611 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 3857335 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 4554712 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 4554712 49184424 ~ 49186096 (-) True G617624

Expression Profile