RNA id: XM_021608272.2


Basic Information

Item Value
RNA id XM_021608272.2
length 1460
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC110527115
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44638690 ~ 44640269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATAGGAGAGATGAAGCTAGTAGAGATCAGATTCTCTCTACACAGACCTCTACAGCACAGAGATCCAGCCATGGTACCTACAATCACTTCAACTATGATCTACCCTAAGGAGCACCTGAGTCTGACAAACAAGCTAAGAAAGCCAGTGGTGGAGAAGTTACGCAGAGATCGTATCAACAACAGCATTGAGCAGCTCAAGTCTCTCCTGGTTCCAGAGATCCTCAACCAGCAGTCCGACTCTAAGCTGGACAAAGCCGACATCCTGGAGATGACAGTTTGCTTCCTGAGACGACAGCAACAGAACCAGCCAGTGAGCTCCTCCTCCTGCTCAGCACCTGTCAATCAGGGTTACTCCAGGTGTGTCCATGAGATTGTTCACTTCCTGTCTAAAGATGAGCAGAAGTCACAGTCCCAGAGAAGACTGCTGCGACACTTCCAGAGCCTGCAGCCATCCTCTGATAAGAACAGGAGGGAGATTGACCGTCCTCAGCTGAGCTCCCCAGCCCAGCACAGCATCAGCAAAGAGAAGAGTCCAGTCAACATCGCCCCCTGGAGGCCCTGGTAGAGACCTACAGATTGGAGCTCCACTCAGACAAACACAACAGATGGACCATGTTGGTCTAAGATTAATTTCATGGACAGTAATGAGTATAATAAAATAGATTCTTCATCTTCTGCTTATGCAGGAGTTTTTTAAGTCTTGCTGTGAGACGTTTAATTAAAGTTGTACTGAAGAAGTTAACGTTCTCTGAGAAAATGATCAAATCGATAATTGAAATAAGTTCATGTTTTGTGAAACGTGTTGATTACATTAATCTTGTTTTTATATTCATGATGAACAATAACTAATGGTTCTCTATGAGAACTTCTAACCCAAAATGGATGCTATATCATCAATCTGTTTGTGATTGTAATTGAATAATGTGTTTTTATGGTCTGAAAATGTGAGTAATTTTTTACCTCTACATTTGTGTAGTGATATAGTCATATTGACATTGTATTGAGCATCTTCTGTGAAGCATGTATCAGTTATATATTTGATATTGATCAACTTGAGCTACAGCATCAATGTTCCTCCGTGAGGATTATTTACCCAAACTGGGTATTATACCTGCTATCATCACTCTGTGATTAacaatatttgatttgtttaaagatCGAACTTCATTTGTGAAATTATTGATCATGTTATTTGAATAATGTGCTTTTTGCAAATGGGAGAAAGAAATGTCTAATTGAAAAACCCTTGTTTATTTGAaacaattattttgtattttataaaGACATTAACTTTGTATCCTATACTCTGATAGAGTATCATATCTTGGAGATTTGTTCAAGTTCTTGTTGTGATGTTTAATCACTGTATTTCTCTTGAAATATTTACCTTAAATTAAGGTATTCAATGATGTGACTCATTGAGTCAGTCTGAATAAATACACAAATCATCAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696474 lncRNA upstream 8729 44629750 ~ 44629961 (+) True G611750
TU695809 lncRNA upstream 48295 44590167 ~ 44590395 (+) True G611161
TU695805 lncRNA upstream 50731 44587596 ~ 44587959 (+) True G611157
TU695771 lncRNA upstream 108674 44529766 ~ 44530016 (+) True G611127
TU695723 lncRNA upstream 113828 44520557 ~ 44524862 (+) True LOC110527847
TU696550 lncRNA downstream 135461 44775730 ~ 44778089 (+) False LOC110527864
TU696551 lncRNA downstream 135461 44775730 ~ 44777995 (+) True LOC110527864
TU696563 lncRNA downstream 139381 44779650 ~ 44780195 (+) True G611811
TU696718 lncRNA downstream 142692 44782961 ~ 44783282 (+) True G611958
TU696736 lncRNA downstream 157302 44797571 ~ 44797801 (+) True G611976
XM_036983327.1 mRNA upstream 2563 44634512 ~ 44636127 (+) True LOC110527859
XM_021608271.2 mRNA upstream 6570 44630640 ~ 44632120 (+) True LOC110527113
XM_021609420.2 mRNA upstream 42913 44591025 ~ 44595777 (+) False cdk5rap1
XM_021609421.2 mRNA upstream 42913 44591025 ~ 44595777 (+) True cdk5rap1
XM_021609417.2 mRNA upstream 52096 44577413 ~ 44586594 (+) False rpn2
XM_021609428.2 mRNA downstream 29517 44669786 ~ 44778095 (+) False LOC110527864
XM_021609429.2 mRNA downstream 29517 44669786 ~ 44778095 (+) False LOC110527864
XM_021609433.2 mRNA downstream 29519 44669788 ~ 44778095 (+) False LOC110527864
XM_021609435.2 mRNA downstream 29525 44669794 ~ 44778095 (+) False LOC110527864
XM_021609436.2 mRNA downstream 29526 44669795 ~ 44778095 (+) False LOC110527864
TU695458 other upstream 610462 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 631783 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 806810 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 1053794 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1227884 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1638465 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 1991853 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3199119 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4186558 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 4932051 49572320 ~ 49620168 (+) False tafa4b

Expression Profile