RNA id: XM_036983332.1


Basic Information

Item Value
RNA id XM_036983332.1
length 5111
RNA type mRNA
GC content 0.48
exon number 23
gene id cntn4
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44803009 ~ 44981651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAAGTCTCAATGACTGCTCACATGGCATCAAAGGCATGTAATTATAGAAATTGTGCAATTTGTGAGGGTAGGACGAAAGCTACGGCCACAAACACAGGAAATCATTCCCCCAGTAAGACAGTCCATAGTCATGTCTTGATGGATCTGGCCCGAGCATGAGTCTGCTACTACCGCAGCGTAGAATGGAAATGGCTGAAGATTGGCTAGAGAGCAGTGTCCTGCAGAGCCCAGTATTCACCAAGCAGCCTGGCAGCATTGTGTTCCCTGTGGACTCccaggagaagaacagagaggtggTGTTCAGTTGTGAGGCCCAGGGAAGCCCATCTCCACTTTATCGGTGGAAACTGAATGGCACCGCAATCACTCCAAAATCAGTCTCACACTACAGCCTGTCTGGAGGCAACCTCCGAATCAGCAATTTGGACAAAGACCAGGATGCTGGAACATATCAGTGCCTCGCCTTCAACTCTTTTGGGACCATCGTGAGCCGAGAGGCCAGTCTAACCTTTGCATACATGGAAAACTTCAAGACCCACAGAAGAAGCTCGGTGTCAGTTCGCGAGGGACAGGGGGTGGTGCTGCTGTGTGGTCCCCCATCTCACTCTGGAGATCTGACGTTCTCCTGGATTTTTAATGAGTACCCCTCATTTGTGAAGCAGGACACACGTCGCTTTATCTCCCAGGAGACTGGAAATCTATACATCGCTAAAGTGGAGCCTTCTGATGTGGGCAACTACACCTGTGTGGTGACCAACACTGTCACCAAGACCAGGGTCCAAGGCCCGCCGACTCCTCTGGTGCTGCGCAGTGATGGTATAATGGGTGAATACGAGCCAAAGATCGAAGTTCAGTTTCCAGAGATTGTCCATGTAGCCAAAGGATCAACAGTGAAAGTGGAGTGTTTTGCATTAGGAAACCCTGTCCCCTCCATAAACTGGAGGAGAATGGACGGAATCCCCTTTTCTAGGAAGGTGGACGTGAGGAAAGCCAGTGGCGTCCTGGAAATCCCCTATTTCCAGCAGGAAGACGCGGGCACATACGAGTGTGTGGCAGAGAACTCCAGGGGGAGGAACACTGTAAAAGGAAAACTCTCTTTCTACGCCCCTCCACATCTGATAGAGAAACCCCAGGATGTGCAGAAGCCCATTGACGACTCTCTGGTGTGGGAATGCAAGGCCACTGGAAAGCCCAAGCCCTCCTATAGGTGGATGAAGAATGGAGAGAACCTGGAGTCACTGGAGGAGCGCATACAGGTTGCCAATGGGCTGTTGTCAATCAGCCGACTGACGCTGTCCGATATTGGAATGTATCAATGTGTGGCTGGAAACAAGCATGGGGAGGTCTACTCCAATGCAGAGCTCAAAGTCATAGCTGTTGCCCCAGATTTCTCCCAGAGCCAGCTGAGGAGCCACACAAtggtgaaggagggaggagatgtGCTGATGGAGTGCAGGCCCAAAATGTCCCCCTGGGGTGGCATCTCCTGGAGGAAGGGCAGTGAGACTCTACAAGAGAGCAACAGAGTTTCCATTCTGGACAACGGAAACCTCCGGATACAGAATGCAACCAAACCAGACGCAGGTCTTTACACATGTGTGGCACGAAACCAGTTTGGAGTGGCAAGCAGCTCCGGTACTCTCATGGTCAAAGAGCCGACCATTATAACCACGCCACCGTCCACCCTGGACGTGACTGTAGGAGAGAGCATCGTGCTGCCGTGTCAGGTGACTCATGACCCGTCTCTAGAGCTCAAGTTCACCTGGTTCTTCAACGAGCAGCTGATCCACTTTGGCAACCACGGCGGATACTTTGAAAAAGTGGGAGGTCAGCATTCCGCTGGGGACATCATGATTCGGAACATCCAGCTGAGACACGCAGGGAAGTACACCTGTgcagtgcagaccaaggtggacaGCATCTCCATCGCAGCAGACCTGGTGGTCAGAGGTCCCCCAGGCCCGCCCACCAGCATCCATGTAGAAGAAATCAGTGAcaccacagcctctctctcctggaggcCCGGGCCTGATAATCACAGTCCAGTTACAACATACACCATCCAGGCCAGGACACCATTCTCCCTGGGCTGGCAGGCTGTCACCACAGTTCCTGAGATGGTGGGGGGCCGCCGCCTGACAGCTACAGTAATAGACCTGAGCCCCTGGGTGGAATATGAGTTCAGAGTCCTGGCAAGCAATGCCATTGGGACCGGGGAGCCCAGCAAACCATCCAAACAAGCAAGGACTAAGGAAACATCTCCGAAGGTCACACCAGCTAATGTAAGCGGAGGTGGAGGCAGTCGCTCAGAATTAGTGATCACTTGGGAGCCTGTTCCCGAGGAGCTGCAGAACGGGGGAGGGTTTGGCTATGTGGTAGCCTTCAGACCGTACGGCGCCACAGGCTGGATGCAGGCCGCAGTGCCCTCATCGGAAGCCTCCAAATATGTCTTCAAGAACGATAGCATCCAACCCTTCTCCCCCTTCCAAGTGAAGGTTGGAGTGTACAACAACGAGGGGGAAGGCCCTTTCGGACCCGTCATCACCATCTACTCTGCAGAGGAAGAGCCTGGCAGAGCGCCCACCAGGATCCGAGCCAAGAGTCTGTCTGCGTCTGAGATTGAGGTTTCATGGAAAGCCCTGCCTTGGAACACCAGCAAGAGAAGAGTCCTAGGCTATGAGTTGAGGtactgggagaagagagagaaggaggaggcagCCAGTGTGCAGAGAACGGTAGGCAACCAGACATCAGCCATTATCCGAGGGGTGAGAGGAAGCAACACGTACTACGTCACAGTGAGAGCATACAACACGGCCGGGGCAGGGCTTCCTAGTGTTACTGTCAATGTCACCACCAAGAAACCACCGCCCAGCCAGCCCCCGGCGAAGGTCATGTGGAACACATTGAATTCCAAGATAATCCTGAACTGGGAGCAGGTCAAAGCCCTGGAGAACGAGTCAGAGGTCACAGGCTACAAAGTGCTCTACAAGCGTAACCGACATAGCCGTCCGAGTGTCATGGAAACCAACACAACGTCGGTGGAGCTTTCCCTGCCTATGGATGAGGAGTACTTCATCCAGATCAAACCAtttggggagggaggagaggggagcagtAGCAGACAGATCACAATCCCCAGAATACCAGGTCCCAATGCAATTGGCTCGGCGACCAAGGTCTCTACTTTATCAGCCCTCAGTACAATAGCACTGTCTTTCACAGCGCGGACATCGTTATGACAAACCGCTATCAGCGAACATCTGATGTGGAGGCAACTTGACAACGGAACAGGAACACCAACCACCCAGTCTGGTGTAACTAGATCCGTTCATTTAGATTTTAGAGGCAGGAGGATGAGCAACGTTGGAAAACAAAGTCactgagatgagagggagagaaagggccTCGCTTCAGCACCCCGTCCACCGGCGAGAACAGGAAATCGACCGATGTCTTGACTCTGTTGTTACCAAAGCAGctttcattaaaaaaaagaaaaatgtctTATATGCATCTTTTGTATGACATGTCTAGCTTTTATAGATTTCTTTTGAAACCAATTCATAATTGGTCTGGGCTTTTTATAAAAGGCAAGGTCGAGGTGAGTTCAGTGCATGGTGCGTACCTACATACAGATCTGACAGTTTTAGAATTTGATAAGTTTTCAGTTTGTTGGAAAGAGCGCTTTTGTCGTCTGAGGTGAATTGCATTTTTTGGTCAAAGAAAACTACCTGTTACTGTGGTTTCATGTCAACAAAAACCATAGTTCAGTCTTCTTAGAAATGTATGCATTTTTACCACCATCTAGACTGATATGTTGAGTATATTGCTTTATAACTATTTTTTTATTACTCCATAAAACATTGCACTGACGCCTGATGAAAAATGAGACTTGATAGAAATGTGACAAACTATGTTAAAGGATGAGAGGGACTTTATTGTCCCTTGCTGGTTTGGAGTCCCATCCTCCATAGGTTGCTCTGGCCTTGGCCATTTAATTGCGCTGGCTGTCTGTCTAATCCGCTCATCATCCTCTCAGTTACATTAGCCGTGTGTCAACTCTAAAGCTATTCTATTCTTTGCCTTGTGTGTGCCTCATCATATCTTCAAAATCCTCAGGTCCTTAAAGAGCCTTAACTTATCTATCAACAACTATTATAAACATAGATGTATGTTGTTATGCAGCTGCTGTATGATGTGTAGCTACACTCTGCATTAATAGACAGGTTATTACCATCCCGTGTATAATCCTACAGTCATtcttagggccaggagtttttttcctggtcaggttatGTGGTCGGGAAAATCTCCTTGTCCTTGTCGTATATTATAGTTAGGGCCAGGGGGTtttctgaccatgtgacctgacctggAAAAGCTCTTTATGAAGGAGAAGTGTGTTTCAACAGTGTCGTGCTGTTCAGCATGGCTTAAAGGTAAGGTGGAAAGCCTGGGACATTTTAGTAGGTCCACTGACTGCTCCCCTACTAAAAGATAAATGCTGCTGACAAGTTTTCCTTTCCCATAGTCTTCTGATGCCATGTGAtactggtacagtacagtacaatacagtcccATACATATGTAGCTTGTAATCCAGTGAAAAAGTAAAAAGTGCAGGTAGTTTGTAGTACTTTCGAGGGGAAGTTTAGGCAGACTAATGGGTCTGACTCAGAATCATGCATCGAGAAATGTCTAATATACTTTTTTGTACACTTCAGATCATTTATATCAAATAAAAACCTTTCTAAAGAGCTGATTAACCTGGTTtttatgtaataacacaaatGTTTCATACAGTAGCTAAATGTCGTTCAGCATGACTGTATTTGCCCTTCTTTTCTGTCCATTTGCTAACTGACTGAATGGCTTGAGACCATACAAAGAGATAGCAGGTTTGTGTATCTGTAGCCATACAAGTCAAACCACTTTTATGTCTGTGCTTCTGTCTCAAACAGGTGTTCTCCTGTAGGCCTACACACTTTGGGATTTACCGGTACTACCATCCATTTACTCCATGTGAAGTTCTGTTTTTTGCTGTTGTTGGTTGTTTATACTGTGTTAATGAATAAAGTTGATTGATTTATATTAAGTGAGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696740 lncRNA downstream 2526 44800165 ~ 44800483 (-) True G611980
TU696730 lncRNA downstream 8336 44794462 ~ 44794673 (-) True G611970
TU696715 lncRNA downstream 20739 44781983 ~ 44782270 (-) True G611955
TU696606 lncRNA downstream 144304 44657737 ~ 44658705 (-) True LOC118936679
TU696503 lncRNA downstream 162740 44634793 ~ 44640269 (-) True G611768
TU697073 lncRNA upstream 112331 45042720 ~ 45042999 (-) True G612295
TU697104 lncRNA upstream 139027 45069416 ~ 45069648 (-) True G612326
TU697257 lncRNA upstream 248849 45179238 ~ 45179648 (-) True G612474
TU697277 lncRNA upstream 261272 45191661 ~ 45191889 (-) True G612494
TU697369 lncRNA upstream 273415 45203804 ~ 45204012 (-) True G612571
XR_005052585.1 mRNA downstream 144253 44657459 ~ 44658756 (-) False LOC118936679
XR_005052586.1 mRNA downstream 144253 44657459 ~ 44658756 (-) False LOC118936679
XM_021609424.2 mRNA downstream 173297 44627888 ~ 44629712 (-) True LOC110527858
XM_021609427.2 mRNA downstream 178328 44623094 ~ 44624681 (-) True LOC110527861
LOC110527855 mRNA downstream 189381 44612093 ~ 44613628 (-) True LOC110527855
XM_021609442.2 mRNA upstream 155131 45085520 ~ 45115473 (-) False LOC110527866
XM_021609443.2 mRNA upstream 155131 45085520 ~ 45120811 (-) False LOC110527866
XM_036983333.1 mRNA upstream 155131 45085520 ~ 45171406 (-) False LOC110527866
XM_036983334.1 mRNA upstream 155131 45085520 ~ 45171406 (-) True LOC110527866
XM_036983336.1 mRNA upstream 306484 45236873 ~ 45268752 (-) False chl1b
TU696391 other downstream 317257 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 317604 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 1223045 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 1266044 43526691 ~ 43536965 (-) False LOC110527816
TU698246 other upstream 944576 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 2337934 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 3556658 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 4254035 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 4254035 49184424 ~ 49186096 (-) True G617624

Expression Profile