RNA id: XM_021609443.2


Basic Information

Item Value
RNA id XM_021609443.2
length 4360
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110527866
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45085520 ~ 45171406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTGTCCGGCTTCAGATTCAGCTCACACGGtctctgagctctctctctctctctctctcttagcagACCAAAGGAAGGGGCTgattgtgtctcagctcctgggGAAGTAGAGGGCTCTCTCCAGTTACTCTCTACAAGGAGCAGAGTTTACACAGGAAATTTTCCCCTCTCACTGGCAATTGGATGGGAAGAAAGAAAGCCTTTGACCTTGGAAAATGAAAATGTTGTTGCCATGGGAACTGTTAATCCTTCTGTCACTCACGGACTGCCTTGCTGAGAGAAACGCACGCCATGGACCTGTCTTCACTCAAGAACCAAGTGACAGCGTTTTCCCCCTGAGGTCTGAGGACAACAAGGTGTTCATCAATTGTAAAGCAAAGGGGAACCCAGTCCCGCATTATAAATGGAAGGTTGATGGGAGATATATTGACATGGATTTGAACTACAACCTGGTTGAAGGAAACCTGTTGATCAATCACCCCCATGCAACACATCACGGGGGCGTTTACCAGTGTATTGCTACCAATGTCTTTGGGACCATCGTCAGCAGGGAGGCCAAGGTTCAGTTTGCATATCTGCAGAACTTCAGCAGAAAGTCCAGGAACACAGTGTCAGTGAGAGAAGGCCAGGCTGTGGTGCTGCTCTGTGGCCCTCCACCCCATAATGGAGAGATCAAATACTCGTGGGTTTTCAACGGACGCCCAAGTTTCCTGCTGCAGGATACCCGCCGCTTCGTCTCCCAGAGGACCGGCAACCTGTACATCGCCAAGGTGGAGGCCTCCGATGTGGGGAACTACACGTGTGTGGTGAGGAACATGATGACCAACGCCACCGCGTACAGCTCGCCCACCCCCGTGGAGCTGCGCCGGGACGCTGTAATGGGAGAGTATGAGCCAAAGATTGAAGTTCAGTTCCCCGAAAGTCTTCATGTCACCAAAGGAACATCAGTGAAACTGGAATGTTTCGCCTTAGGAAACCCAGTGCCTTCCATCacatggaggagaacagatgggAATCCCCTCCCTGGCAAGATCAAAATCAATCATTCCAACGGGGTCCTGGAAATACCATATTTCAGACCGGAGGATGCTGGTGTATATGAGTGTGTTGCAGAGAACTCCAGAGGAAAGAACGTTGCCAAAGGACAACTCGTATTCCAGAGTGTTGAACATCTGCAGTGGGTCCAGACGTTGAAAGATGTTCATATGGCCATCGAGGCTAATCTCCAGTGGGAGTGCAAGGCGAGCGGTAAGCCTAAACCTGTGTACAGATGGCTGAAGAACGGGGAGCCCTTGGTGCCGGAGGACAGGATACTGGTAGAAGGTGGACGATTGGCCGTCCCCAGGATCAACCTGTTGGACTCTGGTATGTACCAGTGTCTGGCAGAGAACGAACATGGCGCCATCTATGCCAGCGCTGAACTCAAAGTTGTAGCCTCTTCACCCGACTTCTCCAGCAGTCCTGTGAAGAAGTCCATGCTGAtccagagaggaggggaggtgatcATGGAGTGCCGTCCCCATGCGTCCCCTAGGGCCTCCATCTCCTGGCGGAGAGGGGGAGAGTTTCTGAAGGACAGCACGAGACGGACCATCATGGGGGATGGAACTCTCCGTATCAGCAACATCAGCGAATCAGACGGAGGGAGGTACACCTGTGTGGCCAGGAACCCCTTTGGGACATCAAGCAGTACTGGTACTCTGGTGGTGAAAGAGCCAACCAAGATAACAGTTCCACCGCTGAGTGTGGATGCCACTGTGGGAGAGAGCATCGTGTTGCCATGTGAAGTGTCTGGAGACTCCTCCCTGGATCCCACCTTTAAGTGGTTCTTCAACGGCAAGCTCATCGATTTCAACAGACAGGACCACTTTGAGATGATAGGAGTGGGATCAGCTGGTGATCTGATGGTCCGGAATATTCAGCTAAAGCATTCTGGGAAGTATGTGTGCATGGTACACACTGTGGTGGACAGTGTCTCAGCAGCAGCCCACCTGATTGTTAGAGGGCCTCCCGGTGCCCCAGAGGGCCTTATTGTGGGGGAAATCACTGACTCCACTGCCCAGCTCTCCTGGGAGTCTGGGCCTGACAACCACAGCCCTGTCACCACATACAGCATCCAGGCCAGGACCCCCTTCTCCATAGGCTGGCAGGCCGTCAGGACAGTTCCTGATTCTGTGCCTGGACAGATGTTTCATGCAACGGTGATAGATTTGAACCCCTGGGTGGATTACGAATTCAGGGTGGTGGCTAGCAACAATGTGGGTGTTGGAGAGCCCAGCATGCAATCCAAGCAGATTCGAACAAAAGCGGCAGTTCCTGAAGTAGCACCAGGTAAtgtgagtggaggaggaggaaggcggGGAGAACTGGTTATCCAATGGGAGCCAATACCAGAGGAGCTACAGAGTGGAGAGGAATTTGGATACGTTGTGGCTTTTCGTCCTCTTGGTACAAGCACATGGAAGCAGACTGTGCTGGCTTCACCTGATGCATCAAGATACACCTTCAGGAACGACAGCGTCCCTCCCCTCTCCCAATTTGAGGTGAAAGTTGGAGTCTACAACAACAAAGGAGAAGGCCCGTCTAGCCATGTGGTTGTAGTGTATTCCGCAGAGGAAGAGCCCTCTGAACCCCCGTCCAGAGTGTGGACCCGGACGCTGTCAGCCTCTGAAATCGAGGTGTACTGGGAACCCATTACCCAGACAGCCAGCAGTTGGAAGATCATTGGATATGAGGTCCTTTGTTGGGAGGAGGGGATGCAGGAGAGTGATGCTGAGATGGTGAGGGTCACAGACACTGCAGCCCTTCTCTCTGGGCTCAAGGGCAGTACTGTGTATCTgatctcagtcagggcccagaaCAGCGCTGGAGCAGGGCCTTCTAGCCCCGCAGTCAACGTCACCACCAAGAAACCACCACCAAGTCAACCTCCAGGGAATATTGAGTGGAACTTGACAAACTCCAAGATCTTTTTGAGTTGGGAACATGTCAAGGCAATGGGAAATGAGTCTGAGGTGACAGGATACAAGGTGCTGTACCGTCAGAACTGGCTTGGGAAGACCAGCGTTGTGGAGACCAACAGGACCAGCATGGCACTGCAGGTCCCTTCTGGTGAGGACTACCTCATTGAGATCAAAGCCCTGAGTGATGGAGGGGATGGCAGCAGCAGTGGCCCCATCAGGATACCAAAGATGTCCAGTCTTAACTCAAACGGCCATTTCAGCTCAGCTCCATGCAAGATTTGTGCAGTTATGTTTTTTATACTTTCAAAGTTGACTTTATAAGACTTAAACATGTATTGCCTTTAATGAACTCTAGCTTTCAGAGTCAAGTACTCAGCAAAGGATGTGTTTTACGTGTACTTTTCACTTCTCAAGAATGTGAAATCAACAGCTAACTATTTAGAGTATTCAACGCAGCTGCATTGCCTTACTGtatgcattttttaaattaatttgtcaACCAAGCTTTTGAGTGTTTTATGTCTAGATTTTATGCCGAAAGGATAGGCTTTTACATATGAGAAGATTGTCAATCCTTAGAACAATCTACATGAGATATTTATATGGCGGATATATGAAAGTAATCAAATGAAAGCGCAAACATACCCCTTAATGATGTTTGTTATGTCCCTCAGTAATTACAAATCAAAATGTTTAGTTCCCCATGGCTGTGTCGAGCTTCTGTTTAGAATGACATGATGTCCTTTTCTAATGGTAGAGATACAGTACCTTGCCTATGTGTGCCTCATCCCTGTGTTTTGTTGTGACCTGTTTGTTTGTTATTGTAAATGTTCTGTAAGAATGAGTCAACTGTGGGAACGACCATGGTTCACTCCGAGGTTGTCCTTTAATTCCTTAATGAGCACAGTGACAGTATGAGCTGTCTGGCGGCCATCAACATTCCGACAGATTCCGTGAAAGAAAATTCACATATGCTATCGTCAACATTTAACAGTATcgaagggcggcgcacaattggcccagcgtcgcccgggtcaggggagggtttggccggggtaggccgtcattgtaaataagaatttgttcttaactgacttgactagttaaataaaggttaaataaaaatatgacCACCACAGACATCTTGGATCAATATGCAGAACTATACAGAAAAACATGTCAATGTGCATTGATACAGTACCTGGGAAAGATTTTCTCAAACATTTTCGATTAATTCAACTCTTTCTCCATGGTTCTTAATCAAGATAGTTCAAGTTGTGGCTGAGTTGTGCTTGATAGGTGTTGCATAACTGTTTTAATACTATTGTATTAACAAGCAAAATGTATCTCTGTGAGATGTAATTGAAAATGAATAAAATGTTTCAAattgaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU697104 lncRNA downstream 15872 45069416 ~ 45069648 (-) True G612326
TU697073 lncRNA downstream 42521 45042720 ~ 45042999 (-) True G612295
TU696957 lncRNA downstream 204367 44878978 ~ 44881153 (-) True G612183
TU696904 lncRNA downstream 220268 44803024 ~ 44865252 (-) True cntn4
TU696740 lncRNA downstream 285037 44800165 ~ 44800483 (-) True G611980
TU697257 lncRNA upstream 58427 45179238 ~ 45179648 (-) True G612474
TU697277 lncRNA upstream 70850 45191661 ~ 45191889 (-) True G612494
TU697369 lncRNA upstream 82993 45203804 ~ 45204012 (-) True G612571
TU697371 lncRNA upstream 84529 45205340 ~ 45205591 (-) True G612573
TU697373 lncRNA upstream 85780 45206591 ~ 45207245 (-) True G612575
XM_021609437.2 mRNA downstream 103869 44803009 ~ 44981651 (-) False cntn4
XM_021609438.2 mRNA downstream 104297 44803009 ~ 44981223 (-) False cntn4
XM_036983330.1 mRNA downstream 155009 44803009 ~ 44930511 (-) False cntn4
XM_036983331.1 mRNA downstream 155009 44803009 ~ 44930511 (-) False cntn4
XM_036983332.1 mRNA downstream 155131 44803009 ~ 44930389 (-) False cntn4
XM_036983336.1 mRNA upstream 116062 45236873 ~ 45268752 (-) False chl1b
XM_036983343.1 mRNA upstream 116062 45236873 ~ 45312671 (-) False chl1b
XM_036983340.1 mRNA upstream 116062 45236873 ~ 45312673 (-) False chl1b
XM_036983341.1 mRNA upstream 116062 45236873 ~ 45312673 (-) False chl1b
XM_036983342.1 mRNA upstream 116062 45236873 ~ 45312673 (-) False chl1b
TU696391 other downstream 599768 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 600115 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 1505556 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 1548555 43526691 ~ 43536965 (-) False LOC110527816
TU698246 other upstream 754154 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 2147512 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 3366236 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 4063613 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 4063613 49184424 ~ 49186096 (-) True G617624

Expression Profile