RNA id: XM_036983338.1


Basic Information

Item Value
RNA id XM_036983338.1
length 5045
RNA type mRNA
GC content 0.49
exon number 30
gene id chl1b
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45236873 ~ 45312977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTGTCATTGAGGTTGTTTTAACCCGGTCACACCGTTGAGAAGTTGTGGAGGGTTTTCTCGGTTGCCATGGATTTCTAAAAGCTATTGACAGCGATAGGGTCCctttctctgaatgtctttgtaAGAGACAACCTATTACTTtagcttttttcttttttttcaggGGGAGCGATAGCGTCCACGGTGAGGAACGCGTTCTCGTGTCATTCTAGTTCCGTCTGAGCGCACGTTTTGAGATTCAGTAGCGATAAGTATCTCAGGCGGCTGTAAACGAAATTCAACCTCCGCAAACTGCTTGAACGATAGGACCTGCTCTTTAAAAAAAGCCCTTCGTCTTCGGCAGGACATAGTTGTGAACTGAGAGTGGGAAGAGTGCAGCTTGTGTCACTTCCTCCAAGATGGTTGTCTGCTGTGTCGCGATGAGGATGAGGTCATCGATGTGGAGCCCAGGATTGGCTCTCCTGACGGGCGTGGTCGTCAGTGTCTGTGCCTTTCACCTCACCACTGCCATTGACATCCCAATGGAGGTTTTAGGTCATGTAAACATTGAGCAGCTGCCCACCATCACAGAGTCCTCCCCCAGCTCTCTGATCGCCTTCCCCTTCGATGAGAGCTTCCCCATGACGTGTGAAGCCAAAGGGAACCCCAAGCCAGAATACCGGTGGACAAAAAATGGGGAAGAGTTTGACCCCTACCAGGACCCGAAGCTGATCAAGGAGGACAACTCTGGGACATTTGTGATCCCCAACACTGGGAATCTCACAGAGTACCAGGGAACGTACCGCTGTTACGCCGAGAACGAATTAGGGACGGCCATAACGGAGGAGATTGAGTTTGTTGTGCCCCACGTTCCTAAGTTTCCCAAGGAGAAGATTGATCCCATCAAGGTGGAGGAGGGTCAGCCTGTCATTTTGGAGTGTAACCCTCCTAAAGGAATCCCTCCTTTACAGATCTACTGGATGACCATCGACCTTCAGCACATAGAGCAGGACGAGAGGGTGTCCATGGGTCTGAACGGTGACCTGTTCTTCTCTAATGCTCTGGAGAAGGACAGCCGCAGAGACTACTGTTGCTTCGCTGCCTTCCCCAGGATTCGCACCATCGTCCAGAAGAATGCCATGTCTGTCATAGTCAAGAGCACCAATTCAATCCTGGAGAGAAAACCAAGTCTTCTGATGCCCTCTGGTGTCAAGTCGGAGACACAGCTGGTGAAAGGTGACGAGCTACTACTGGAGTGCATTGccgagggctttccaacacccAAGATTGAATGGGTAAGGATGGGCCACAGGCTGCCCGACAGAGCGACGATAGAGAACCATGGGAAACTCCTGAGCATTGACCGGGTCAATGAGGACGACAGTGGGAAATACAGGTGTAAGGCTAAGAACATCCACGGAGAGGCCAACCACTCCTTTGATGTATCAGTGGAAGAGCCTCCTAAGTGGGTATCTGAGCCTGAGAGCCAGCTTAGTACGATTGGCTCAGACGTGCAAATCAAGTGCTCTGCCACTGGTACTCCTCAGCCCACCATCCAATGGAGGGTGAATGGAAAACCTCTTAAGGAGGTCCCAGCATCTAACAGAAAGGTGTTGGATGACACCATTGTCTTGCACAACGCCAAATCGATTGACAGTGCCGTCTATCAATGTGAGGCTTCCAACAGACATGGAACCCTACTGGCCAATGCCAATATCATGATCATGAATCTGCCTCCTATGGTCCTGACAGAGGAAGGTCTGGAGTATTCAGCTGTGGAGGGAAAGAGTGTAGTCATGCACTGCAAGGTGTTCAGCTCTCCGCCCTCTATTGTAACCTGGAACAAGGATGACTCAACAGGGTCTGTGGAGGGACCAAGGTTTACAGTTCACCAGAATGGATCTTTGGAGATCCATAATGTGGAGAAAGAGGACATGGGCCAATACACATGTTACACCAAGAATACTGAAGGGAAGTCTGCTATAACTGCCTTACTGGATGTTAAAGATCCCACAAAGATATTCCAGGCCCCAGAGGACTTGCAGGTCCTAATAGGAACCACAGCCCAGCTCTCCTGCCTGGCGGTGTACGACAACTCCTTCAGTGGCGACTTTGAGATCGTGTGGGAGAAAGACGATATGGAGATAGCACTAAACCACACTGAGAATTCTGGATATTTCTTAGAGGATGGCATACTGCAGATCGTCAACGTCAGCCACAGAGACCATGGCATGTACAAGTGTGTGGCCAGAACTCCAGTGGACCAGGACACTGCCTCTGCACTACTCATAGTGCTGGATGTCCCCGATGCACCTGAGAATTTGGTGCTGTCTGAACACAAGGGCAGAAGTGTGAAGCTCAAATGGATCCCTGGGGATGACCACAACAGCTCAACCACTGACTTCATTATTGAGTATGAGGAGAGCCAGTGGGAGCCAGGGAACTGGAACGAGCTTCAGAGAGTTCCAGGAAATCACGGTTCGGCAGTCCTCAAACTTTATGGACATGTTGACTATCGCTTTCGAGTGTCTGGAGTCAACGCGGTGGGTAGGGGGCGTCCCAGTGAGCCCACAGAAAGATACAAGACCCCTCCTGCAGCCCCTGACAAGAACCCTGAAAATATTAAAATCGAAGGTCATTTGGCACATGAAATGGATATCAACTGGGAGCCATTGTCCCCCATTGAACACAATGGGCCAGGCCTTGAATATAAGGTGAGCTATAAACGGCAGGATGTGGAGGAGGACTGGCACGAGCATGTGGTGAAAAGACACTCGTTTGTGGTGAAGGGCACTCCCACGTTTGTGCCATATGAGGTCAGGATCCAGGCGAGGAACTACCAGGGATGGGGACCTGAACCCAAAGTGATGACTGGCTACTCTGGAGaggactTCCCCTCCGCGGCCCCTGATGATGTGGCGGTGGAGGTGATGAACAACTCGCTGGTCAAGGTCAGCTGGACGCGCGTTCACAAGGAAAAGCTGCATGGACATCTGGGAGGCTACAGGATAAACTGGTGGCGGCTGCGTAGTCTGCTGGACTCAAAGAAGACTCAAGGGAACAAACACACGCTGACATTCCCGGGGGACAGGAACCATGCCATGGTACCAGCGCTCGCGCCCTTCTCTGAGTACAGCCTCATCGTCATGACCTTCAACGGGCGAGGCAACGGGCCAGGCAGCCACGCCGTCAACTTCAAAACTCCCGAGGGAGTTCCAGAGGAAAACCCTGTTTTCAGGGTCACAGATGTTCAGAAGCACACCGTCGCCCTCACCTGGGCACCTCCTCTGGTTGCCAATGGAGTCGTCACAGGATACCGGCTAGAGTATCAGCTAAtcaACGACACAGAGGAGGTGGGTGTCCTGCAGTCGATGGACATCAGCAGCCCGGACACCACCTCGTGTGTCCTGCGGAACCTCGAGGCCGTCAGCAGGTACAAGTTCTACCTGCGCTCCTGCACCAGGGTGGGCTGTGGGCCCCAGGTCAGCGAGGAGAGCACCACCACACCTGTAGCGCCTTCAACAGCGGTATCCACTGTCAACTTCAGCCAGTCTGCCTCCCCCTCACCTCCAAGCACTGCAGTCTCCCACGTGTCCAATGCCACCCATTCCAACATAGTCCCAGCCCTGTTGAATATTAGTTCCTCAGTTAGTGACAACTTTGCAAATATCAGCTGGATTCCAGGAAGCGAACAAACCGATTCAGAGTTTTATGTTGCATATGTGAACAACCGTAAAGGTAACTGGAAGATCTCTGAGGCAGTAAACACCTCTAAGACTTTCCACATCATTGAGGGGCTGGAGCCTGGGACTGCGTACACTGTGCGCCTTATGACTAACAACTGGGTTGATAATTCTAGTATTTTTGAAGATGTAATCAGGACCAGGGATAAAGGTCTGGCAAGCATCCATGGAGGAATCTCCACCCAGGGCTGGTTCATCGGGCTGATGTGTGCCGTGGCTGTCCTCACACTCATTGTGTTAATCGCCTGCTTTGTCAACAGAAATAAAGGAGGGAAATATGCTGTAAAGGAGAAAGAGGACCTCCACCCAGACCTTGAATCCCAGGGTATGCATGATGACACCTTCTGTGAATACAGTGACAACGATGAGAAGCCACTGAAGGGCAGCCAGCACTCTCTGAGCGGACAGATCAAAGCAGAGGACAGTGGGGACAGCCTGGTGGACTATGGGGATGAGGACGCCCAGTTCAACGAGGATGGCTCCTTTATCGGCGAGTACGCTGGACGCAAGGAAAAAAGGGTGTCCATGGAAGTCAAAGGAACCACCAATCAGAGCAAAGCGTAAGAGAAAGGAAAAGGGGCCATCATCCATCCTTAGGACAACACTTTCATCAGACTGGTCGAGGGGTGGGGggcggcggggggggggggggggggacttaatAAAGGAAGTACATGACATCCATACCAAGCAGAATCTCATGTGAAATGTAATTTGTCATTGTCAGCTACACTGCCATCTTCATTTTATAAAGCTTGTCCTTTTATCAAACTGTAACAGAATGCATCATTTCGAAATGTATATATTATTGTATGTGTGGAGATGTTTTATATTACCGCAAATCAGTGAAAACCTTTGAGGCTTTTGCATTTTTTTGTCAAATGCAACAACTGTTTGTAATCCACTCAAATATAAAAGGAAGAAAATAAGAACTCCAGTCCACATTGCTCCTTGTGTTATACTGCCAGGTCTTTTAGCAAACACGTGTATGTGAGCATATGATGTCTGTCTTGTTCAGTTGAAGCAAATATTATtgacattttatatttgaaatgcattcattAAATATGATTTTAATATGTGTACAAAAGCTGTTTATTAACTTATTTCCTGGTTTTATACAtgacaaaataatacaaaatggATGCCTCAGTTTTATCACATGATGAAATACACAAAAGACCCAAGGCAGGTGGGTCGTTCCACTTattaggtgccttttgagtaGTGTAATTtggtaaacatatatttttttacctcattTTAATATTGTCATAAAGACCaaatgttcaacttaataaaaaaaacactttttcccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU697368 lncRNA downstream 1887 45234587 ~ 45234986 (-) True G612570
TU697383 lncRNA downstream 18515 45218129 ~ 45218358 (-) True G612585
TU697382 lncRNA downstream 18927 45217701 ~ 45217946 (-) True G612584
TU697373 lncRNA downstream 29628 45206591 ~ 45207245 (-) True G612575
TU697371 lncRNA downstream 31282 45205340 ~ 45205591 (-) True G612573
TU697432 lncRNA upstream 2800 45315475 ~ 45315703 (-) True G612634
TU697436 lncRNA upstream 6904 45319579 ~ 45319804 (-) True G612638
TU697464 lncRNA upstream 28595 45341270 ~ 45341579 (-) True G612666
TU697516 lncRNA upstream 50923 45363598 ~ 45366183 (-) True G612716
TU697531 lncRNA upstream 76447 45389122 ~ 45389386 (-) True G612731
XM_036983333.1 mRNA downstream 65467 45085520 ~ 45171406 (-) False LOC110527866
XM_036983334.1 mRNA downstream 65467 45085520 ~ 45171406 (-) True LOC110527866
XM_021609443.2 mRNA downstream 116062 45085520 ~ 45120811 (-) False LOC110527866
XM_021609442.2 mRNA downstream 121400 45085520 ~ 45115473 (-) False LOC110527866
XM_021609437.2 mRNA downstream 255222 44803009 ~ 44981651 (-) False cntn4
XM_021609450.2 mRNA upstream 412637 45725312 ~ 45731306 (-) False ppp4r2b
XM_021609449.2 mRNA upstream 412637 45725312 ~ 45731514 (-) True ppp4r2b
XM_021609452.2 mRNA upstream 421682 45734357 ~ 45750834 (-) False LOC110527871
XM_021609451.2 mRNA upstream 421682 45734357 ~ 45750835 (-) False LOC110527871
XM_021609453.2 mRNA upstream 423103 45735778 ~ 45750837 (-) True LOC110527871
TU696391 other downstream 751121 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 751468 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 1656909 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 1699908 43526691 ~ 43536965 (-) False LOC110527816
TU698246 other upstream 562290 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 1955648 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 3174372 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 3871749 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 3871749 49184424 ~ 49186096 (-) True G617624

Expression Profile