RNA id: XM_021609447.2


Basic Information

Item Value
RNA id XM_021609447.2
length 3615
RNA type mRNA
GC content 0.54
exon number 8
gene id pdzrn3b
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45581833 ~ 45705499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTCAGAGAGTGGGGGAGTGTGCGTGCGAGTTAGTGCGAGACCGACTGAGAGCAGAGCGTGCTTACTcctactcagacacacactcacagacgcACGCGCATGGCTGGCTGCGCAGCCTTCATATAAATCCTGCCAGCTAAACCTATTTCCTtggagagtgggagacagagcAGACTGGTCAGTGGCTCATCAGCTCCATGTGAGCCAGTAGCCCAGAGAGAGACAACCTGCCTGGCTGACTGGAGGGGAAGACTGGATGGTGAGATTCCTCCACCATGGGATGCAGCCTCTGTACCCTGCAGAAGCCTGAGGAGCAATACAAACTACTCTATGAGGTCTGCCAGgtgaatgGGAAGGACCTGTCCAAGGCCACCCATGACCAGGCAGTGGAGGCCTTCCGCACAGCCAAGGAGCCCATCATGGTCCAGGTGCTTCGCCGGGCACCCCGCCCCAAACCTTCCAGCCCTGCCTCAGACACCCAGGTGGTGGACATCAGCACCCAGACAGACATCACCTTCCAACACATCATGGCCCTCACCAAGCTGCCTGCCGCCGCCCCCACCGTGGCTGTGTTGGAGCAATACCTCATGCCCGAGGAGCATTCCCCCGGGCACGAGTACTTTGACCCCAATGATTTCCTGGAGGGTATGCAGCAGGAGATGGAGCGAGAGGAGCTGGAATATGAGGAAGTGGATTTGTACAGAGCCAACATCCAGGACAAGCTTGGGTTGACCGTCTGCTACAGGACTGATGATGAGGACGAGACTGGGATCTACGTCAGTGAGaTTGACCCAAACAGCATCGCTGCAAAGGATGGAAGGatcagagagggagatagaatTATCCAGATCAACGGGATTGAGATCCAGAACCGGGAGGATGCTGTGGCTCTGTTGACCAGTGAGGAGAATCAGAATGTGTGTCTACTGGTGGCCAGACCAGAGATCCAGCTGGATGAGGGCTGGATGGATGATGACAGGAATGACTTCCTGGATGACCTCCACATGGACATGCTGGAGCAGCAGCACCACCAGGCCATGCAGTTCACCGCCAGCATGCTGCAGCAGAAAAAGCGTGAGGAGGATGGTGGAACGACTGACACAGCCACCCTGTTGTCCAATCACCACGAGAAAGACAGCGGGGTGGGCCGCACCGACGAGAGCACGCGCAACGACGAGAGCTCTGAGCAGGAGAACCTGGGGGACGACCAGACTGCGGCCTCCAACACGCTGGGCAGCTGCAGCCGCAGGAAGCTGGCCTACAGCCAGGACACCCTGGGAAGCATTGACCTGCCCTTCAGTGGTGAGTCCTTCATCTCCGCAGACTACGACCACGCTGACTTCCTGGGTATCCCCGCCGACGAGTGTGAGCGCTTCCGAGAGCTCCTGGAGCTGAAGTGCCAGGTGAGGAGCGCGGGGGGCCCCCAGGAGCTGTATTGCCAGAGTGCAGGGGCTAGAGGTGCCGAAGAAGGGGTGGACAAGGAGCTGGAGCTGCTGAATGAGGAGCTGCGCAGCATTGAGCTGGAGTGCCTCAACATCGTCCGGGCCCACAAGATGCAGCAGCTGAGGGAGCAGTACCGCGAGTCCTGGATGCTGCACAACAGCGGCTTCCACAACTACAACACCAGCATCGACGCGCGCCGCCATGAGCTCTCCGACATCACAGAGCTGCCCGAGAAGTCAGACAAGGACAGCTCCAGCGCCTACAACACCGGTGAGAGCTGCCGCAGCACCCCCCTCACCCTAGAGCTGTCCCCAGACAACTCCCTCCGCAGGGGGGCAGAGAACCAGGGCGAGTCTGGGGCCTCCAGCAGCGCAGGGCCCAACAGCAGGATCCTCAagcctctgctgtctcctgtccaGGAGGCCGGTGGCCCCAGCAGAATCAGGCCCTCCTCCTCTAAGGAGTCTGAGTGTGGCCTGCAGGCGGAGGGGAAGGAGCGTAAGCTGGGAGAGTCTACTCACAAGCTGGCCCAGCCCCGCTCCCTGTACAAACACGCCCACATCCCAGCCCACGCCCAGCACTACCAAAGCTACATGCAGCTGATCCAGCAGAAGTCTGCCGTGGAGTACGCCCAGAGCCAGATGAGCCTGGTCAGTCTGGTCAGCCGCGGTGACCCCGTGAACCCCGAAGACATGCTGGATCCCAAGATGGAGTGGAAGGTGAAGATCCGCAGCGACGGCACGCGCTACATCACCAAGAGGCCCGTCAGGGACAAGCTGCTGAAGGAGCGCGCCCTGCGTATCCACGAGGAGCGCAGCGGCATGACCACAGACGACGACGCCATCAGCGAGCTGAAGATGGGGCGGTACTGGAGCAAGGGGGAGAGGAAGCAGCACGCGGTGCGCGCCAAGGAGCAGAGGCAGCGGCGCGAGTTCATGAAGCAGAGCCGCGCCGACTGCCTGAAGGAACAGGCCAGCCTGGACGATGACAAGAAGGAGCCCAACATCATTGAACTGAGCCACAAAAAGATGATGAAAAAGAGGAACAAGAAAATCTTTGACAATTGGATGACTATCCAGGAACTTTTGACCCACGGTGCTAAGTCGCCTGACGGCACGCGAGTGTACAACTCCCTCCTGTCCGTCACCACAGTGTAGTAGGCAGACAAGACAGGCCTgtggtgtaatgtactgtaaataaTAGGACACTGTGGATTGGGGTACAGTTTCCTGCCTCGTTCAATGTGGCAACATTTTGTTAAAATGAAACAGGAAAAGCCTTTTCTAAATTAACTTTTGACCCCTGCAGGCGGTTGGGAGATGCTCCACAGAGTGTTCCATGGATCGACTTTGAAGATGATTGACATGATAAGGATGATTATCAGACTGTTTTCAAATGCTTTCCGTAACTTTTCTACCTTTGTGCTTGctcttggggcagcaggtagcctagtggttaagagcgttgggccagtaacctaaaggttgctggtttgaatcccagagccaactaggtgaaaaatctgccgacaTGCCCtggagcaagacacttaaccctaatttctcctgtaagtcgctctggataagagtgtctgctcaaCTGTAAACTCTTTTGAATAATATTGATAGTGTTTCACAGCAATGTTTTGGAAGGTTTTGAAAGTGTGTAAAGACTGTGCCATAAGTAAACAGCAGCCAACATTTACATATTCTTTtggttttatttcatttttaataagtATCTCTTATCAGTATTTTACTGTTATGCATACCTTTTGCTTATTGAAAGAAATATTTAGCTTCAAGGTCAACACATAATCCTGAGAGGACTTTTGTAAATGTAACTAAAACCTCCTCGTTCTCTGCAAACAAAACACTTCCGTTATTGACGATCTGAAAAGGGGGCTGTTTTTCAAAAGTTATACATCCAGTGTGTATCGTCTGTTACATATTCCACCTTCGCGTCTGTATCAGGATAGAGCAGATCATTTGTTGAAATCAGAATCTTTCCGTGTTCTTTTTGTTTTTAAGAGCACATTGTAGTCGCCTTTACCTTTTGTAAGCCTCCAAATAACACGGCTTAACAAACCCTTAATTAGGTACCCAATTTGATGTCTTGTAAAATGAGAGAAATAATAAATTATTGTTTTATATTTGATGAGCTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU697561 lncRNA upstream 189842 45485864 ~ 45489104 (+) True cntn3b
TU697542 lncRNA upstream 283653 45394950 ~ 45395293 (+) True G612741
TU697478 lncRNA upstream 327693 45350953 ~ 45351253 (+) True G612680
TU697475 lncRNA upstream 329048 45349692 ~ 45349898 (+) True G612677
TU697461 lncRNA upstream 338294 45340395 ~ 45340652 (+) True G612663
TU697903 lncRNA downstream 28858 45734357 ~ 45735901 (+) True G613087
TU697930 lncRNA downstream 57961 45763460 ~ 45804022 (+) True G613108
TU697978 lncRNA downstream 134600 45840099 ~ 45840622 (+) True G613155
TU697979 lncRNA downstream 170106 45875605 ~ 45883386 (+) True LOC110527873
TU698344 lncRNA downstream 268387 45973886 ~ 45974220 (+) True G613494
XM_036983344.1 mRNA upstream 189699 45419148 ~ 45489247 (+) False cntn3b
XR_005052588.1 mRNA upstream 291473 45355541 ~ 45387473 (+) False LOC118965290
XR_005052589.1 mRNA upstream 291473 45355541 ~ 45387473 (+) True LOC118965290
XR_005052587.1 mRNA upstream 800046 44870194 ~ 44878900 (+) True LOC118965289
XM_036983328.1 mRNA upstream 900851 44749649 ~ 44778095 (+) False LOC110527864
XM_021609454.2 mRNA downstream 63199 45768698 ~ 45809619 (+) True shq1
XM_021609456.2 mRNA downstream 137664 45843163 ~ 45883401 (+) False LOC110527873
XM_021608273.2 mRNA downstream 258896 45964395 ~ 45967169 (+) True prok2
XR_002474170.2 mRNA downstream 286788 45992287 ~ 45997119 (+) False LOC110527875
XM_036983352.1 mRNA downstream 292288 45997787 ~ 46209553 (+) False foxp1b
TU695458 other upstream 1650718 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 1672039 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 1847066 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2094050 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 2268140 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 573235 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 926623 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 2133889 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 3121328 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3866821 49572320 ~ 49620168 (+) False tafa4b

Expression Profile