RNA id: XM_021609452.2


Basic Information

Item Value
RNA id XM_021609452.2
length 2864
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110527871
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45734357 ~ 45750837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCAAAGCTCCTCTTCGCTCTCTATCATCTGCAGCATAATGCAACAGAGCAGTAACGACAAAATGTAAACTCTAGGCGTTATTGCCAATTCACAGACATGAAAGAGGAATATTGTGCTCCTCCAAATCATTAGAACAATTTCCCACGATGAGAATTCACTGCAAAGTTGTTGTGATCACTGTCTGTTTAGGAGTTTTTCTACTTTTGTACTTTTTGGGGGGGAATGCTGCAGACGATCCGCCTTTGAAAGAAGTTGCGGAGGATTACTATTTTCCAACGTCCTCTGGGCTTGGAAACATTGTTGCATCGAAGTTAACAAAAAAGCCTCTAGATGAACTTCACATTCTACAGAAACAACCACTCACGTACCGAAAAGAAGCGAAAGTAGTCAGAGGAGGCAATGCGATCGCAAAGCGACAGAGGAGTGACATGGGACTGGGCAGGCTCTCATTGAAGCGCGCCCGAGCTGAAGAAGTCATGCACCTGGCCGTGGTGGCCTGCGGGAACCGCCTGGACGAGACGCTTACCATGGTCAAGTCGGCCCTTCTCTTCAGCATCAAGAGGATCAAGTTCCACATCTTTGCAGAGGACCCCTTGGCCTCTCAGTTTGAAAAGAAGCTGAGCCAGTGGGACCGTGCTATCTCCAACAAGTTCCAGTACAGTATCTACCCAATCACATTCTCTGTGGGGAATGCAGAGGAATGGAAAAAGCTGTTCAAGCCCTGCGCTGCCCAGAGGCTGTTTCTCCCTGTGATCCTGAAGGACGTGGACTCTCTGCTCTACGTGGATACAGATGTGCTGTTCCTCAGGCCCATGGATGATATGTGGAGTTTCCTCAAGGCCTTCAACACCACCCAGCTTGCTGCTATGGCCCCAGAGCATGAGATCCCCAAGATTGGCTGGTACAGCCGCTTCGCACGCCACCCCTTCTATGGGGTCACCGGGGTCAACTCTGGAGTCATGCTGATGAACCTCACAAGGATCCGAAGAACTTTGTTCAAAAACAGCATGATACCCAGTGGCCTGTCATGGGAGGACCTCCTCCACCCACTCTACCAGAAGTACAAGAACCACATCACTTGGGGCGACCAAGACCTCCTCAACATTATCTTCCACTACAACCCAGAGTCTCTGTACACCTTCCCATGCCAGTGGAACTACAGGCCTGATCACTGCATGTATGGGAGCAACTGTAAAGGAGCGGAACAGGAAGGCGTGTCCATTCTCCACGGGAACCGAGGAGTGTATCATGATGACAAGCAGCCAGCCTTTAAAGTAGTGTATGATGCAATACATGAGTACCCCTTTGAGGACAACATGTTCCAGTCGCTGTTCTATCCCCTCCAGACCAAGTTTCTGGACACTGTCAACACCCTGTGTGGTCGGATTCCCCAGGTGTTTCTCAAACAGGTAGAGAAGACCATGAGGACCGTGTACGAGAAGAAAGTGGTCCGTCATGTGAAGCCGCCACCTAAATAACTACAGGAAACTGGATGGTGGAAGTTGTTTCTGACTATGGAAATCTTTCTGTGGAATATGTGCAATGTCAAGACCAGACTGCCATATTATGACTGAACTAGTATGGAAACTGATTGATGGAATCAGAATGCGTTGCACACCACAGCGGATCACAAATGACATTCCATTTGATTGGAATGGTGGAATGGATCATGACGATCATGTAGGACAGGCATTCAGTGCTGGTCAATGATGCCGTGTGTGCGGTAAGCTTGCCTTATCACCCGCTTAATTGTTTTTACAGAAACTGATTTACAGGTAAAAATGTGATTGGCTTCAAAATGTGTttaatacctttttttttaagtacaatgCTTTCTTCCGGTCGGGATTAAGTCCTGGTGGAGAGAATTAAGTGGGAATTAAAAAATGGCAGAGGTAATTTTGTTTCTCTTTTAATGTGCATGAAAGTGTCTGTCGTAACACCTTTATATCTGAGGCTTCTGGAAATGGTTTGAAATGTTCCTACTCTGCCTGGAGGTCTGCGCCTAACTGATCCTTTTCTGTCAAACAAAGCTAATGGGTCTTTGCTTAACCAGAGCTTTCTGTCAAAGACAAAAATCACTTGCATATCTGTACATGTGGGAATGAGTGGATGTGATTCAACTTGTCCAGTTCTCCAAATGCCAACGACAGTATCATGAACATATCATACACACTAGAAATTGACCATTCAGATTTTGTATTAGAAGATGTATTAGGTAAATGTCCTATTGCAGGGGCAGGCAACCCTGTTCCTAGCGTGAGgcaggcacttcatgtttttgCTTTAGCTGACCTGGAAGACGAGGTGTGTTGAATTTATGCAATCGCCGAAGTGATCAGTTCGGTCAGGTGTGGTGCCTTAGTTGGAACAAAAATCCTGCAgtactccaggaacagggttgactGCCCTATTGCATTGCTGTAATAGTTTGACGTGTGCAAATAGAACAGGGCATGCATACCATTAGTCCTCGATTCAATTGTCAAAGAATTGCAAATCCCTATATGAAAAAGCAGTGTAGTTGTCGCAGATCAAAACTACCAAAGTGCTAGTGCTTATAGTCGGACAGTATTTTCAAAACTATGTGCCATGTGAATTAATAAATGctcttaaaatgttttattttgtttgtgCAAGAAAAGGACAGTAAACTTAATGAAAGTGTCTTGCTATAAAGTCATACTATCAGtgagtgatacagtatgtggacTCTGGGATTTATAATGTGACGTTCGTGTAGCCTATACTCCATCGGTTGTCATGTGTTTACCGGCAATCATTTAAACTGGAAACTCAAGATGGTTGTATTTATACATGCTTATGTTTACTCTTTTTCCAGAATAAAGAAAATGCCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698136 lncRNA downstream 28553 45705586 ~ 45705804 (-) True G613307
TU697721 lncRNA downstream 223931 45510157 ~ 45510426 (-) True G612915
TU697696 lncRNA downstream 245171 45485492 ~ 45489186 (-) False G612891
TU697697 lncRNA downstream 245171 45485492 ~ 45489186 (-) True G612891
TU697544 lncRNA downstream 337860 45396039 ~ 45396497 (-) True G612743
TU698244 lncRNA upstream 121536 45872370 ~ 45900132 (-) True G613410
TU698687 lncRNA upstream 375026 46125860 ~ 46129320 (-) True G613820
TU698688 lncRNA upstream 379525 46130359 ~ 46139862 (-) True G613821
TU698748 lncRNA upstream 447008 46197842 ~ 46198275 (-) True G613880
TU698749 lncRNA upstream 454187 46205021 ~ 46209544 (-) True G613881
XM_021609449.2 mRNA downstream 2843 45725312 ~ 45731514 (-) True ppp4r2b
XM_021609450.2 mRNA downstream 3051 45725312 ~ 45731306 (-) False ppp4r2b
XM_036983335.1 mRNA downstream 421380 45236873 ~ 45312977 (-) True chl1b
XM_036983338.1 mRNA downstream 421682 45236873 ~ 45312675 (-) False chl1b
XM_036983337.1 mRNA downstream 421683 45236873 ~ 45312674 (-) False chl1b
XM_036983346.1 mRNA upstream 218596 45969430 ~ 45972012 (-) True gpr27
LOC110528957 mRNA upstream 566695 46317529 ~ 46333627 (-) True LOC110528957
XM_036983364.1 mRNA upstream 591154 46341988 ~ 46348143 (-) False LOC110527878
XM_036983363.1 mRNA upstream 591154 46341988 ~ 46374962 (-) True LOC110527878
NM_001165143.1 mRNA upstream 706181 46457015 ~ 46460324 (-) True praf3
TU696391 other downstream 1248605 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 1248952 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 2154393 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 2197392 43526691 ~ 43536965 (-) False LOC110527816
TU698246 other upstream 124131 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 1517489 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 2736213 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 3433590 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 3433590 49184424 ~ 49186096 (-) True G617624

Expression Profile