RNA id: XM_036983346.1


Basic Information

Item Value
RNA id XM_036983346.1
length 2583
RNA type mRNA
GC content 0.42
exon number 1
gene id gpr27
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45969430 ~ 45972012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATGCCTGAGGAATGCATGAGACAGGATCCAATTATTGAATGAGTCCATGTATCGCAGAATAGTGTACACGCACAGGACAAACGTTTCCGTTTCTGATCTGAGGACGTGGATTACATCTCATCTATCTCGAGATTAGCCCCTGGCTGTTCAGTATTGTCAGTCTCTACCTCATCCGATTCAACCTCGTTTGGCAACGTAAATAGTAGACATATTTTCCACAAATACAAACCAACGCGCATAGTTTATATACAACTGTTCTTTAATTCTGGATCTATCCATGAACCATGCCTTCGATTGAGCGGACTGAACAGTGGTTTGGCTATAGCCTACCATGCCCTATTAATTGCGTGCTGAAGTGATGATGACGGCCTGTCCCCAGTTTTATGTTTATTTCTTCCGCAAGACGAACGAGAACCTCTGCCATCAGTGGAAATGGAGATATTTTTTTGAAATGTGTGCCCATTAAACGGATCCTTTTAAAATGGTGTGTGCGAACACTGCTATCAGCAGAAAATGGAACTACGAACATGGGTGTATTTCATATTCGAAACGGACACTTGTGAGATGAAGGATTACAAGAAAAGCAATGTAAAACGGTGACTTCATTTTTCGATGGATATCAATTGCTTTTGTTAATCAGGCTATGCTTTAAACTCAGGAGAATAATTAATTATATTCTGAATAGGTTAAAACGCAGATTCTGTTTAACCTGAAGTATTTTTGACTTAAAACGTGCATCATGTACATTTTTTTGCAGGGCAATTTTGATCAATCATTGATACTTCGACGAGAGGAAGCAGGACAACTTGATGTGCGAATATAGAATCAACGCGGCTTTGACAATAGCCTGGTTGCATAGATGGCAAATACAAGCGAGTTTGGGGAAAGCAATCCTTCACTACAGAATTATGCTATCACCGCCTCTGCGGTGAAACTGGCCTCGCTCGGTCTGATCATTTGCATGAGCCTTGTAGGGAATGTGGCGCTGTCCCTGTTGGTGCTGAAAGACAGCTCCCTTCAAAAGGCTCCGTATTATTTTCTACTTGATCTGTGCTTGGCAGATATAATACGGTCTACCGTGTGTTTCCCCTTTGTGATGATATCAATCAATAACGGTTCCACCTGGACATACAGCATTATAAGTTGTAAGATTATTGCTTTCATGTCAGTCCTTTTTTGTTTCCATGTAGCGTTTCTGCTCTTCTGCGTCAGTGTCACCAGATACATGGCAATAGCACACCACAGGTTTTATTCCAAACGAATGACATTATGGACATGTGTGGCAGTGATTTGCATGGTCTGGACCCTCTCTGTCGCTATGGCTTTCCCCCCTGTATTCGACGTTGGCACCTACAAATTCATCCATGAGGAGGAACAATGCATTTTCGAGCACCGATACGTGAAAGCAAACGATACCCTGGGCTTCATGTTGATGCTGGCTGTCATCGTGGGAACAACACACGTTGTTTACATAAAGATGCTGTGTTTCGTTTATGACCACCGCAAGATGAAACCCGCTCAGCTGGTCCCAGCTATAAGCCAAAACTGGACCTTCCACGGGCCAGGTGCAACTGGGCAGGCAGCTGCCAATTGGATTGCAGGATTTGGACGTGGTCCCACCCCACCAACATTAGTGGGCATCAGGCAAGCCTCGCATAATGGAAACAGACGGCTGCTTGTCTTGGATGAATTTAAAATGGAGAAACGCATAGGGAAAATGTATTACATGATAACTCTGGCGTTTCTTCTCTTCTGGGCCCCGTACATTGTTGCTTGCTACCTTCGAGTTTTTGTCAAGGGAGGCACCATTCCACAGGTCTACCTGACTGCGGCGGTGTGGATGACGTTCATTCAGGCGGGGGCGAATCCCATTATTTGTTTCATATTCAACAAGGAGCTGAGGATCCGTCTCAGAGCTTGTTTCCCGTGTTGTCTCAGCACACAGACGCCTATGTCTATGGAGCCTTACTGTGTCATCTGATAGGTTCAACTGTTGTTTTAGACAAGGGAAAACGAACAGAACTGTCATGTTGGTATTAAAGCCTATAGGTGATATTTCTCAGTCTCTCTGCTTGCCCAATTTTTCCACATATGTTGAAGGCCACATTTTGTGATTTGCACATACAGAAAGTGTATAAAGTTGCCAATCTTGATTTCAAATACTAATCATTTAGCATATTTTATGAATCTCATTAGTATTTTCTTTGAGTATAGCCTAGGCCTATGTCAACCCTGTGAGAAAGACATATGACGTGTGTATATTCTGTGAAGCTATTTTGTCGCTTTATTCTGAACAAACCAAAAAAAAATGACTTTGTATCTTTCAGAAAATCTTAGAATTATTTGTGTGGAGAAAGTGTTAACTCACTTTTACAGTAATTTGCAAATACATGTTCTTCCTGGATGTTGACATAACCTGGTGATACAAATGCATCCCTTGTACATTCCCTGTAAAATAGacaaatcatttgtttttctatgGACAATGACCATGGGACTCTAAAAGAAGAAAAGTGTCAGTGGTGCAGAGAGGTGTTTGCATTGTTTGGACGTCTGAGTAAATAAACAACAAATGAATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698244 lncRNA downstream 69298 45872370 ~ 45900132 (-) True G613410
TU698136 lncRNA downstream 263626 45705586 ~ 45705804 (-) True G613307
TU697721 lncRNA downstream 459004 45510157 ~ 45510426 (-) True G612915
TU697696 lncRNA downstream 480244 45485492 ~ 45489186 (-) False G612891
TU697697 lncRNA downstream 480244 45485492 ~ 45489186 (-) True G612891
TU698687 lncRNA upstream 153848 46125860 ~ 46129320 (-) True G613820
TU698688 lncRNA upstream 158347 46130359 ~ 46139862 (-) True G613821
TU698748 lncRNA upstream 225830 46197842 ~ 46198275 (-) True G613880
TU698749 lncRNA upstream 233009 46205021 ~ 46209544 (-) True G613881
TU698779 lncRNA upstream 277901 46249913 ~ 46250150 (-) True G613911
XM_021609453.2 mRNA downstream 218593 45735778 ~ 45750837 (-) True LOC110527871
XM_021609451.2 mRNA downstream 218595 45734357 ~ 45750835 (-) False LOC110527871
XM_021609452.2 mRNA downstream 218596 45734357 ~ 45750834 (-) False LOC110527871
XM_021609449.2 mRNA downstream 237916 45725312 ~ 45731514 (-) True ppp4r2b
XM_021609450.2 mRNA downstream 238124 45725312 ~ 45731306 (-) False ppp4r2b
LOC110528957 mRNA upstream 345517 46317529 ~ 46333627 (-) True LOC110528957
XM_036983364.1 mRNA upstream 369976 46341988 ~ 46348143 (-) False LOC110527878
XM_036983363.1 mRNA upstream 369976 46341988 ~ 46374962 (-) True LOC110527878
NM_001165143.1 mRNA upstream 485003 46457015 ~ 46460324 (-) True praf3
XM_021609476.2 mRNA upstream 1073306 47045318 ~ 47141529 (-) False LOC110527887
TU698246 other downstream 93730 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 1483678 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 1484025 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 2389466 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 2432465 43526691 ~ 43536965 (-) False LOC110527816
TU700211 other upstream 1296311 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 2515035 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 3212412 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 3212412 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 3223592 49195604 ~ 49195970 (-) True G617632

Expression Profile