RNA id: XM_036983360.1


Basic Information

Item Value
RNA id XM_036983360.1
length 6419
RNA type mRNA
GC content 0.45
exon number 16
gene id foxp1b
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45997787 ~ 46209553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGCAAGAATCTGGGACGGAGGCGACAAGCAACGGTCCGGCCAATCAGAACGGAGCAGCGAGCGTGGAGGGCGGAGCCAGGGACGCGAGGCCCGGGAGCGTGACGACCCCGTCGGCAGCTGACCTGATCCATCTCCAGCAGCACCAGGCTCTCCAAGTGGCTCGACAGATCcttctacaacaacaacaacaacaacaacaacaacaacaacagctgcagCCTCAGCAAGGCACCGGTCTAAAATCCCCCAAAGGCAGTGAGAAGCAGCCAAGTCTACAGGTTCCAGTCTCAGTGGCTATGATGACACCCCAGGTAATAACTCCCCAGCGGATGCAGCAGATCCTCCAGCAGCAGGTGCTGAGCCCTCAGCAGCTCCAGGTGCTCCTGCAACAGCAGCAGGCACTCATGTTACAACAGCAACTCCAAGAGTTCTACAAGAAGCAGCAGGAACAGCTCCACCTCCAGCTCCTCCAGCAGCAGCATGCGGGCACGCAGAGTAAAGAGcagcagcaggcccagCGTTTGGCCTTCCAGCAGCAGCTCATGCAGGTCCAACAGCTCCAGCAGCAGCACCTGCTCAACCTCCAGAGACAAGGCCTGCTCACCATCCAGCCTGGACAGACGACCTTGCCCCTGCACTCGCTCACTCAGGGCATGATTCCAGCAGAGCTTCAGCAGCTGTGGAAGGAGGTGACGAACGTGAAGGAAgagaacagcagcagcaacaacaacagccaccgtGGCCTGGACCTGTCCTCGCCACAACCCCCCAAGAACCCCCTCCTCAACCAACACGCCTCCACCAACGGACAGTACATGAGCCACTCTCTGAAGAGAGAAGGATCAACGCTAGACGACCACCACCACTCTCACCATAGTCACCCGCTCTATGGGCATGGGGTTTGCAAGTGGCCTGGATGCGAGGCGGTATTTGAGGACTTCCAGTCATTCCTAAAGCATCTCAACAATGAGCACGCCCTGGACGACAGGAGCACAGCCCAATGTCGGGTGCAAATGCAGGTCGTACAGCAGCTGGAACTACAGCTGGCGAAAGACAAAGAGCGTCTGCAAGCCATGATGACGCATCTCCACGTCAAATCCACTGAGCCCAAGCCGACCCCACAGCCACTCAACCTGGTGTCCAACGTCACCCTGTCCAAAACAGCCCCCCCTGAGGCCTCGCCCCCTCTGAGCCTGCCCCAGACCCCAACCACCCCCACGGCCCCCCTGACTCCCCTGTCCCAGGCCTACTCCGTCATCACCCCCAACAGCCTCCACCACAGCGTGGGCCCCATGCGCCGGCGCTACTCTGACAAATACAACATGCCCATTTCCCCAGATATTGTCCAGAACAAAGAGTTCTACATGAATGCTGAAGTCAGACCTCCCTTCACATATGCCTCACTTATACGCCAGGCTATCCTTGAATCCCCGGAAAAGCAGCTAACACTAAATGAAATTTACAACTGGTTCACACGAATGTTTGCATATTTCAGGCGCAACGCCGCAACATGGAAGAACGCAGTCCGGCATAATCTTAGTCTTCACAAGTGTTTTGTGCGAGTAGAAAACGTTAAAGGGGCTGTGTGGACAGTGGATGAACTAGAGTTCCAAAAGAGAAGGCCACAAAAGATCAGTGGAAGTCCAGCATTAGTGAAGAACATCCAGACCAGCTTGGGTTATGGGCCAGCTCTCTCAGCAGCCTTCCAGGCTTCAATGGCAGAAAACAACATACCTCTATACACTACTGCTTCCATTGGAAGTCCCACCCTCAACTCCCTGGCGAATGCCATCCGAGAGGAGATGAACGGAGCGATGGACCATGGAAACAGCAACGGCAGTGACAGCAGTCCAGGACGCTCTCCCTTGCCAGCTATGCATCACATTAAAGAGGAACCGCTGGACCCGGAGGACCACGAAGGCCCCCTCTCCCTGGTGATGACGGCCAACCACAGTCCAGATTTCGGTCACCACAGAGATTACGATGACGACCAGGGCCACGATGACATGCTGTAAGGCCAGGCCCCCAGAGGCAGAACTAACCTTAGTCATCTGTGAGATGCCACGACGTCACAGATAACACAGATACAAGACTGCAGTCTCAGCCCTCTGATGACAGCTATCAAATGTTTCCAATTGACTTTTAGTGCCATTAAATACATAGTGAAAAACACAAGAACGAGAATACGTCTCACTTGGGAGTATTTTTGATTTATATCTACTTTTTGGTTTAAGTGAacgaaaaaaaaaaagacatttctaCTCAACATGCGTTGGATGGACATGTTTGGTACTGGGGACTTCTTGGTTAGTGTGGTGATTTCAAATCCAGGATGGACTTGGACCTGCACTGTGCAGCCAGTATGGACTGCATGCAGCCCACTCAACCACACTGAGCACGGACTGCTGAGGggttctctgtctttttctctctctctcacacacacacacacacacatatgcccaTAAACTTAAGAGATATTGACTGACATTTAatttacattgtgtgtgtgtgtgtgtgtgtgtatgttttgttcattgtcACTGCCTTCAAAACTTAATTGGTTTGCTTCCATCTAGGGTGGGAGGGATGTTTTTTGGTGTGTTTTGAGGGTGAGGGGTTTCAAATCTAAATGTCTTTTTCATTGTACATTGGCTCTTTATCGCTTTTGATTTCTTTAACTGATCAGACCTCATGCCCGTGCTGTGGAGATTCTGTATGGTCAGCACTTGATGAATGCTTATATGATTTCCTTTCATGTtgtctccatgttgttgtttttttacatgaAGCAGAATGTCAAAATACCAAGTAGTATTTTTCTGTCATTTATTCCACATGCTTCAGAATGCCACCTCCCTGAcatgtagccccccccccccatcccccatccccccaAGCTCATGAAGTCCATCTGCAATGCACTACTCGTAATGAAGGCTCTCTCCACGCATCAATGAAGTTTAATTTAAGATGGGAATGAATGACAGAGAAATCATGCAGGTTATGATTTATCCTCATGAAATGATGTTTGAGAACAGCCCTTCACGGCAGTGCATGTTAGCTGCATCCACATTTCTGATCATTCGCAAGCTCCCAGTTTTAGAAAGAAAATGAAATGCCAGGTGTGCAGGACAAAGATGATATTTTAGACCAGATAGTTGTGATTCCTGAAGACAACTGTCATCGTAGATCAAACGTGTCTAGTTTTCCACACTGTCATTTCACTCATGGAGGGATTGTTTGGCCAGGCTTGACGATATCAAAGTGCATTCCCTATAGTTGTCATGTTTTTTACCATATGCATGACCAGTTGGCTCTCTCAGTTCTGAGTGATTATTAATAATTACACACATCAGATTAAATATTAATGTCCTTAATTTAGGGATAATCCCAAAACAGGCAATAAGACCTGATCATTGCTTCATTCCAGTATTTGTCAAGCATGTTACGGCCCCAGACCCTTCCACAAGCGAACTGATGATCTGGTACAGTCGGTAGTCAACATCAGCAGAACCCAATGACCAAGTCAGAGTAGTGGTGTAGGTCCTGTGATAGAGTGAATGGGATTGATGCAGGGACTGTGGCGCTGTGAGGCTGAACACAAATGGGCTTGATCCTAGGTTTGGTATATTGATATGAAACTGAATATGCTCGGTCAAAGACTGACTTTTTAAAGACTGCAACCACTttgcatttttatttattattattagttCAGTTTTTAGTTTTACTTTTGTATTTAGTTGTTGATGTGTCGGATATCTTGTTCTGTGACTACCAAAGATAAACTACAAAGTAAAAACGATGTTCTCTGTTTCATGCAATAGCAGATAAGGCCAAATATCCTCCATTCTCTCCCATTGGATGTGACAGGATCTATTGATGGAGTATAGTCTCAGCTTTGTCAAGCCAATGGCTCATTGATTAGAGAGGGTGCTCCTCAAGCAGTCGGACTGTCATCACCTTTAAAGCCAAAGGGTTGTCATGACGAGTACAGTAGCTGCAGGACTTTGCAGTGACCAAAACCTCAAGGGAGATGCGGAGTCAGACAAACATTATGACCAAATTAGGGGAGCATGGTCTTTGGACCAATGAGAGGGAAAGGGATCACTCTGTCCATCTATCAGCAGCAGATTACTGTGCAACATAAGGGGGTGGATAAAAGGAGATGATGATAATAACGATGCTGATTTACCAGTAGACAGGAGAGCTTTGCAGAGAACAATGTGAAAAAGGATTCTTTACTTCAACTGGACCACACAATGAttaaatattttgtttgttttttattctTTATGAATTTGTACCCTTTCCAACGATTGTATGCCACTCTTTAGTGAGTCCTGCTATCTTGACGGGATTCTACTGTTCTCTGTTAACATTGGCACGGCTTTATGATTGTGTTTAGTTTCTGTCAACGTATTACTTTTTATATTAAAAAACACTCCTGTCAACTAATAAGCTGGGTACAAGGTACTTTATGGCAGTTATTTGAACATTTCATCATGCGTTTCCTATTGCTAATGAAAATGGGCAATCTGTGGTTttcagaaaatgtatttaatatccAATAGCAGGCAGCTGTGGGATGGGTCAGTAACAGCCGGACTGGGATCGTGAGAACAACTCGATCTCGTCCAAAGCCAGTCTTTTGCTGATTTGCTTGGTATTCTAAAGGGGGGAAAGCTGGTAGATTAGAGCATTCTCAGCATGTGTAGCTTGACATTACTAAAGATAACAGCATGAGAAAAATTGTTAGTACACAGACCTCAGTTCAAACCTATAGGGAATGATTAAAttaagagagaaaaaaatgtgtttcaCTCAGTTGCATTTAGTTGTATGTCTTGCATGTGTAGTCTAAAACTGTAGTGagtgaaaaaatatttttttaaaggcaaaaaaaaaaaaatgataagaATACAACGTTTGAGCTTGTTTATCTTGAGGGTCTCGCATCCTTTTTGCAAAATCAATCCAAACCTCAGGCCTTTTTTCATGATGAAATCACCTAACTTTATTTGATCCCCTTTTTTCACAGTCTATTGTCAGTCGCTTGGACGTGGGCTTTACAACAGTAGGTTGTTAGTATTGCGCCTTGTGTCTTTTTCTTGTCGTTTTCTTTGCTTGTTTCTTTCAAAGATCAAAAAATTACATGTGTGTTATTCTTTTTGCTTTCTCACAACTGCTTTGTGTTAGCTATAAAAAAAAGCTTTGAAAAATTGCTGTATGTATTGGAATAGCAAACTGTACTGCAAATGTATTTTACTTAGTAATCCTTGCTTTAAAACATCATACATGCAGACATCTGTGCGAGATGGGCGGGGCAGGGTGGGGGATTATCCCAGATTTTGGATTTTAAACTGTAAAATAGAAAACAGACTTTTTCTCTGTTATCATTGACCTAAGGATTTTGTACAGATTTTGTTCTTCCTTGTGTTAAGCTGTTTTTGATACTTCCTTTTGATGGTCCAACCACTGCCTTCTGTGGCTATATGTTAAACATTACTGCTCGGCAAAAGGGCAGACAGGTATATTTCCTCTACAAGACTGAGGTATCTTGCATGACTAATTCCAGGGTCACAGAGATGAGAAATGATAGTTAAGTGGTCAGTAATAGTATAAGGGTGTATCAATCTAATGATATTTTATATGAAACGAATaggaaaaataagaaaaatatgCAGTGCCAAGATGTAGAGTATTTGTTAAATGCTTTGTTTTTATTCCAGAGGAATCGATTAATTCATACGTACATCATCAGTGATGTCATCATCATCAGCCCATCATCattaggtgaaataaatacattttttttgttatatTTTTATCTCAACTGTTATTTTTTAATAATAAGTAAAGCCAAGCACATCAGGTAGCAGTCTTAAGTGGAGCACAAAGGCTAAAGGTTAAACGTTTGATGTGAGTCGGACTGTACTCGTTCTTGATATACTCGATGTTGAATTTTGAACAAGAAATATCAACCCAAGTCGGGTAACCTTTTGACCTTGCTGTGCTCTGTGTAGGCGGCATCAGATTCCCCCTCAAGACACTTGTGGCCATGCTAATTTGCCACGGTTCCATCAATCATGATCCACCCCACTGTCGTTCACCACTGTGTTGTACCATCATCCTCTCAACCCGTGCTTctggcggagggagggagggaagagggtaCAGCAGAGCAGCTGTCACGGTGCTTTAATGTTTCAGCAGTTAGGTTAGTTTTCTGTTGAAGCTGTAGTCTGTAGTTTTCTGTTTTATTAACTAAATATTCTGCTCATCACCTCCATCATCAGTCTGTAATCTCCTCATCATTCCTGGTCTGTCTGATGCAGAGTATTCTGTTGTACAGTCAGTCTCGATAACTGACGTAAGCATTCTaaaaatgcaataaaatgctGGTTGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698371 lncRNA upstream 120933 45992485 ~ 45997072 (+) True LOC110527875
TU698360 lncRNA upstream 130924 45986721 ~ 45987081 (+) True G613510
TU698359 lncRNA upstream 131723 45986050 ~ 45986282 (+) True G613509
TU698344 lncRNA upstream 143785 45973886 ~ 45974220 (+) True G613494
TU697979 lncRNA upstream 234619 45875605 ~ 45883386 (+) True LOC110527873
TU698473 lncRNA downstream 2260 46211813 ~ 46212217 (+) True G613612
TU698508 lncRNA downstream 44534 46254087 ~ 46254298 (+) True G613647
TU698524 lncRNA downstream 68661 46278214 ~ 46278421 (+) True G613663
TU698527 lncRNA downstream 72944 46282497 ~ 46286328 (+) False G613666
TU698529 lncRNA downstream 72944 46282497 ~ 46286328 (+) False G613666
XR_002474170.2 mRNA upstream 120886 45992287 ~ 45997119 (+) False LOC110527875
XM_021608273.2 mRNA upstream 150836 45964395 ~ 45967169 (+) True prok2
XM_021609456.2 mRNA upstream 234604 45843163 ~ 45883401 (+) False LOC110527873
XM_021609454.2 mRNA upstream 308386 45768698 ~ 45809619 (+) True shq1
XM_021609447.2 mRNA upstream 412506 45678946 ~ 45705499 (+) False pdzrn3b
XM_021609459.2 mRNA downstream 129260 46338813 ~ 46341970 (+) True LOC110527877
XM_036983367.1 mRNA downstream 179405 46388958 ~ 46451934 (+) False LOC110527879
XM_021609464.2 mRNA downstream 202305 46411858 ~ 46450572 (+) False LOC110527879
XM_021609466.2 mRNA downstream 202307 46411860 ~ 46450600 (+) False LOC110527879
XM_036983366.1 mRNA downstream 202307 46411860 ~ 46451934 (+) False LOC110527879
TU695458 other upstream 2089777 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2111098 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2286125 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2533109 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 2707199 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 69181 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 422569 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1629835 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2617274 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3362767 49572320 ~ 49620168 (+) False tafa4b

Expression Profile