RNA id: LOC110528957


Basic Information

Item Value
RNA id LOC110528957
length 2386
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110528957
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46317529 ~ 46333627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATTTTGTTTGTCTTGTATTCTCTGCAGTCTCTGACACCCTAATGGAATTCATGGTGGATTTTTTAACCAAAGCCAAAGAGATAGCAGTGCCAACATTCCAGAGGAGCTGAGGGTCAACCTACAGAAGGCCCTGGACATAGCGTGTGGTCTAGACGGCTACCTGGAGGAAATGAGCAGCCAGTAAAGTGCACCTCTTGCCGAACTGTATCAAGTGCGTCACATCACAGGGCATGTGGAAGGCCAGACTCTGAAAATGCTGGTTCACATGAGTAAAGCCAAGATGATCCTTGAGATAGGCATGTTCACAGGCTATGGGGCTCTGTCAATGGCTGAGGACTGCCCGAGGATGGTTCACCGGTTGCCTGTGAGCTCGAGCCACATCTTAAAGAATTTGCTCAGCCCATATTTGACAAGTCTCCACATGGCAGGAAGGAAACAGTAAATATATGTTCTGCCATGGATACCATGAAGGAAATGGCTGCAGCAGCCAAGTAGTTTGACGTGGTCTTCGTCGGCGCCGACGAGAACAACTACATCAACTACTACAAGTTCATCCTGGACCACAACTTCCTACGGCTGAGTGGTGTGATATGTGTGGATAACACTCTGTTCAAAGCTAAGGTCTACCTAAAGGACACCGCTGATGAAAATGGACTGGCGCTTCTGAGATTTTAACCAGTTTGTCACAAGTGATCCTCGTGTGGAGCAGGTCATTCTTCCTCTCGGAGATGGGATCAGCATCATCCGCGGAATCGTTTACTACTCACAACTTGTGTCTCAGAGCAAGGTAACATACGATGTGATATTCCGTGGTGTGAATGGGCGGTCGATCCTGGACCGGATGCGTctggacggcagggtggcctatgTGACAGGGGCAGGCCAGGGTATAGGCAGGGCGTTCGCACATGCTCTGGGAGAGGCTGGAGCCAAGGTGGCTGTCGTGGACATGGATCAAGGGAAGGCTCAGGGCGTGGCTGAAAGGTAAGGACTTCCACTACTATTTAATACCGGGATCAATTGCATTGTGATTACTGCTGACATCAGCAAATCCGTGAATGTTGAGAGGATGATTGACAGCATTGTGTCCAAATGGGGAGAGATCCAAATAGCATGCAACAATGCAGGGATACACATGAACTCAGCCAGTGAAGACACCAGTCAGGAAGAGTGGGACCAAACCTTTGATGTCAACTTGAAGGAGACTTTCATGTCCTGTCAGGCTGCAGGTCATGTGATGCTGAAGCAAGGATATGGGACGATTAATAACACAGCGTCCATGGCCAGTCTAATAGTGCCCCATCCACAGAAGCAGCTTGCCTACAACACCTCAAAGGCAGGAGTGCTCAAACTGACACAGTCTCTTGGCACAGAGTGGAAAGACAGAGGGGTCCGAGTCAACTGCATCTCGCCGGGGATTGTTGacacccctctcatcctctcagaGAGTCTGAGGCCTCTGGTGCAGTGCTGGCTGTCAGATATCCCTGCTGGACGACTGGCTCTAGTGACAGACCTGCAAGCTGCAGTGGTCTACTTGGCATCTGACGCCTCCGACTACATGACAGGGCATAACTTAGTCATAGAGGGTGGGCAAAGTctgtggtagagagagggcgaTACTTTCTTTGTTCCACCCTTGGATCACACAGCGAGGGAGATACTTTCTTTGTTCCACTCTTGGATCACTCTTGGGAATAGGCACCTACTGTGAATGATCTCCACAGgggagaatagaatagaataacatTGAGAGATTAGGTCAGGGTGATTACCTCACTGGTTTAGCATTATGTCAGATTGGAGATGGTTTTTGTTAAGTTTCATACGGTGCTCTTCCAATAAATGGGTCATATTTATTTAGACACAATTGTGCTCTTATATTATATCTATGATCGATTTTCTTGACAGTAATGCACACCTTGTTGCACATCCTTAACACGCTGATCGTATCCCTTCTACATGGTGCAAATCTGTTTTTTCATACAGAAACCCTTTACTCGCTTGCCTCTGAGTGACTCTTCTAAACAAGTATTCAAACCATTGGCCTCGTCAGAGGTATTTTGTTTCGTCGGTGCCAAGTTGTTGAAAGTGATTCATACAGTAGTTCAAGATATTAATACGCTAAACTCATGCTCTTTTCGACTGTGCAAGCAAGTACAGTACGCACTGGATTGGGCAAAGTAAATGAAGAAAGGGGATCCTATAAAGTGGCTCCACTGTACTGAGATGTGTATGGCAAGATACTGTACACAAGACAGTCTGTCCCTCAAATAAACACTATCAAACCTGTAAAAAATAAACGTTCTTTTTTTTTCATCAAAAGAAAATGGTTTCTACTTACTATAACGTAACCCTTACGGGGACTGTACACTTAAGTAA

Function

GO: NA

KEGG:

id description
K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698803 lncRNA downstream 31256 46282513 ~ 46286273 (-) False G613935
TU698802 lncRNA downstream 35433 46281884 ~ 46282096 (-) True G613934
TU698800 lncRNA downstream 38373 46278721 ~ 46279156 (-) True G613932
TU698781 lncRNA downstream 63655 46253479 ~ 46253874 (-) True G613913
TU698779 lncRNA downstream 67379 46249913 ~ 46250150 (-) True G613911
TU698900 lncRNA upstream 48305 46381932 ~ 46382225 (-) True G614020
TU699036 lncRNA upstream 96640 46430267 ~ 46430496 (-) True G614156
TU699040 lncRNA upstream 105896 46439523 ~ 46439754 (-) True G614160
TU699042 lncRNA upstream 107541 46441168 ~ 46441439 (-) True G614162
TU699045 lncRNA upstream 116815 46450442 ~ 46451846 (-) True G614165
XM_036983346.1 mRNA downstream 345517 45969430 ~ 45972012 (-) True gpr27
XM_021609453.2 mRNA downstream 566692 45735778 ~ 45750837 (-) True LOC110527871
XM_021609451.2 mRNA downstream 566694 45734357 ~ 45750835 (-) False LOC110527871
XM_021609452.2 mRNA downstream 566695 45734357 ~ 45750834 (-) False LOC110527871
XM_021609449.2 mRNA downstream 586015 45725312 ~ 45731514 (-) True ppp4r2b
XM_036983364.1 mRNA upstream 8361 46341988 ~ 46348143 (-) False LOC110527878
XM_036983363.1 mRNA upstream 8361 46341988 ~ 46374962 (-) True LOC110527878
NM_001165143.1 mRNA upstream 123388 46457015 ~ 46460324 (-) True praf3
XM_021609476.2 mRNA upstream 711691 47045318 ~ 47141529 (-) False LOC110527887
XM_021609477.2 mRNA upstream 711691 47045318 ~ 47141560 (-) True LOC110527887
TU698246 other downstream 441829 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 1831777 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 1832124 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 2737565 43579093 ~ 43579964 (-) True G610570
TU695154 other downstream 2780564 43526691 ~ 43536965 (-) True LOC110527816
TU700211 other upstream 934696 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 2153420 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 2850797 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 2850797 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 2861977 49195604 ~ 49195970 (-) True G617632

Expression Profile