RNA id: XM_021609459.2


Basic Information

Item Value
RNA id XM_021609459.2
length 1892
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110527877
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46338813 ~ 46341970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGGTAACACTTTCGTAAGCGCACTGATCATTATAGCTCCTCCCTTGGTGATCTTCTGTCGAGTGGCGAGTATATATACAGACAGTAATAAGAGATGGATATGATGCTCTATTTCTTGACTCCGCATCTGTCACGCATTGTCTTCCTATTCATAAGATGTCGTATGTTGCAATCACCGGGAAGACACATGTGGAAGAGCCACTGCAATGCCACAATATAGCAGTGGTAAAGAATAACGAGTTTCATTTAGTTCAAGTCAATGGTACATGGAAACGCAAAACGGTAAAGAATTTTAATAAAAACTTGAAAGGTCGAGTATCAGCTGCCAAAATCTATGAGAGCACCACGGAGCAAGGCACCTCCTGGACAGTGATCAGTCCCATCGTCTTCACCTACAAGGTGATTGAGTCCCTGGGCCTGCTGGACCCCAGCAACGACACCCTGCTCCTGGGCCACATCAGGGACCCCCAGCAGCAGGAGGCCCTGAGGAGCAGCATCAGCACCAAGCCCCTGAGGCGCTTCGTGGTCATGGACCAGACCGTCTACAACCTCTATGGCTGCCAGCTCACAGACTACTTTGAGGCTCGTAATGTTCTCTACAGGATCCTGCCCTTGACCACCACAGAGGAAAACAAGTCCATGGAGCTGGTGATGAAGATCCTGGAGGAGGTCCATAAGTTCTCCCTGGACAGACGCACAGAGCCCATTATTGCTATTGGTGGAGGGGTCTGCCTGGACATCGTGGGCCTGGCGGCTTCCCTCTACAGGAGACGCACCCCCTACATCCGTGTCCCTACCACCCTCCTCTCCTATGTCGACGCCAGCGTGGGGGCAAAGACTGGGGTGAACTTTGCCAACTGTAAAAATAAGCTGGGTGGCTACATCCCCCCGGTGGCTGCTTTCCTAGACCTGTCCTTCATTCAAACGGTTTCCCGAAGACACATCTCCAATGGGCTGGCCGAAATGTTAAAGATGGCCTTGATGAAACACAGAGATCTCTTTGAGCTGTTGGAGACCCACGGTCCGTTCCTGTTGGACTCCAAGTTCCAGTCTGACAGCGGTCTTCATGGGGACAACAAAGACGCTGCCTCCGTGTCCACGCGCGTGGCCATAGAAGCCATGCTAGAGGAGCTGGCCCCCAACCTGTGGGAGGACGATTTGGACAGACTGGTAGACTTTGGTCACATTATCAGCCCAGAGCTGGAAATGAAGGTGCTCCCGTCCTTGCTGCACGGAGAGGCGGTCAACATCGATATGTCCTACATGGTGTATGTGGCCCATGAGAGAGGCCTCATGACAGAGGAAGAAAAGCTGCGGATTATAGGCTGCATGGTGGGGCTGGAGCTGCCTGTGTGGCATCAGGACGTTACTTTGGCACTGGTGCAGCACTCACTTTGTGAGAGGCTGAAGCACTCTGGTGGACTGGTCAGGATGCCTCTACCCATTGGCCTAGGGCACGCAGAGATCTTCAATGACACGGGTGATGAAAGCCTGTACAGAGCGTTTGAGAAGTGGTGTGATGAGCAGCGACTACAGTGACCTGAACTGGTCACAAAGACTTTGTATTGCTGTAGATGATTTATGTTGAATGATTGAAATGATTGGAACAAGGATGTGTCATTTCTGCATGACACTTTGGCCCAGATATCTGGAATGCTCAACCATTTTTCCATAGTTGTAGATGATATTTGTTGGTGCTGTTGATTTTTCAGATTGACTTGATTTGATTGGAAATAGCATGTCCTGTCTTGTCATATTGAACAAAATCAACCCCACAGTTTTATTACTATGTTACAAAAAGGGATTTTCATCAAAACTGTATGTTTTATGACTTTGTATTGCTATTGATGTCACTTTTTCGTCTCCATTAAATCATTTTTAAGACCTTAAA

Function

GO: NA

KEGG:

id description
K01735 aroB; 3-dehydroquinate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698527 lncRNA upstream 52485 46282497 ~ 46286328 (+) False G613666
TU698529 lncRNA upstream 52485 46282497 ~ 46286328 (+) False G613666
TU698530 lncRNA upstream 52485 46282497 ~ 46286328 (+) True G613666
TU698524 lncRNA upstream 60392 46278214 ~ 46278421 (+) True G613663
TU698508 lncRNA upstream 84515 46254087 ~ 46254298 (+) True G613647
TU698860 lncRNA downstream 12972 46354942 ~ 46355408 (+) True G613982
TU698884 lncRNA downstream 28802 46370772 ~ 46370994 (+) True G614004
TU698943 lncRNA downstream 80344 46422314 ~ 46422603 (+) True G614063
TU698947 lncRNA downstream 86588 46428558 ~ 46428855 (+) True G614067
TU698954 lncRNA downstream 98546 46440516 ~ 46440807 (+) True G614074
XM_036983352.1 mRNA upstream 129260 45997787 ~ 46209553 (+) False foxp1b
XM_036983347.1 mRNA upstream 129260 45997789 ~ 46209553 (+) False foxp1b
XM_036983348.1 mRNA upstream 129260 45997789 ~ 46209553 (+) False foxp1b
XM_036983353.1 mRNA upstream 129260 45997790 ~ 46209553 (+) False foxp1b
XM_036983351.1 mRNA upstream 129260 45997792 ~ 46209553 (+) False foxp1b
XM_036983367.1 mRNA downstream 46988 46388958 ~ 46451934 (+) False LOC110527879
XM_021609464.2 mRNA downstream 69888 46411858 ~ 46450572 (+) False LOC110527879
XM_021609466.2 mRNA downstream 69890 46411860 ~ 46450600 (+) False LOC110527879
XM_036983366.1 mRNA downstream 69890 46411860 ~ 46451934 (+) False LOC110527879
XM_036983365.1 mRNA downstream 69891 46411861 ~ 46451934 (+) True LOC110527879
TU698525 other upstream 59480 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 2310585 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2331906 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2506933 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2753917 43584020 ~ 43584896 (+) True G610563
TU699203 other downstream 290152 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1497418 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2484857 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3230350 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 3244900 49586870 ~ 49620168 (+) True tafa4b

Expression Profile