RNA id: XM_021609464.2


Basic Information

Item Value
RNA id XM_021609464.2
length 3622
RNA type mRNA
GC content 0.56
exon number 24
gene id LOC110527879
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46388958 ~ 46451934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATCAGCAGGGAGACATAGTAAAGCGTGTGTGTAATAGTAGACTACCACTGACGTTCCTCCAGGGTATTGACATTCACAACAGCATCCAGACACCGAGTGAAGTCGGTGTTCAACGCAGCAGCGTACATTCTCTTGGGCCAGGGATCTCTCAAGCATCACAGACGTTCTACAAACTAGGATCAGTAGAGAAAGGCTGTGCTGGGCACCGGGAACCTTGATCTCTAGGAGTGAGTGAGCGGTGACGGGGCAGCTATGGCTGTGAGCTTCGTGTCTAGAGTGGAGGAGCTGCTGGCCTCAAGCAGCCAGGTTGTTTGGAACTTGGCGGAGCAGACCCTCAGAAGGTGGTCCTCTCAGGGGCTCATGCCAGCCCGCCGCTTCCTACAGACATGGTGGCAGCTCGGGGACTTCTATCAGATGACGGAGGGCCGGCTATGCCAGGTGCACCTCCTGGACGACAGGAAGCTGGAGCTGCTGGTCCAGCCAAAGCTCTTGTCCCGGGATTTGTTAGATTTGGTGTCCTCACACTTTAACCTGAAGGAGAAGGAGTATTTTGGACTATTCTTCATCGATGACACTGGTCAGAGTAACTGGCTCCAGCTGGATCGCAGGGTCCTGGATCATGACTTCACTAAAAAGACTGGTCCAATGGAGCTCAAATTCCTGGTCAGGTTTTATATTGAGAAGATAACATTCTTGAAAGAGAATACAACAGTAGAGCTGTTTTTCCTAAATGCCAAATCGTCAGTCTTTAATGAGATCATCGAAGTGGAGAGTGAAAACGTTTTCAAATTAGCTGCTTACGCCTTGCAGGAGGCCAAAGGAGACTACACAAATGTTGAAAGCTCCAGATCGGACCTGAATAAGCTACCAGTTCTACCCACCAGAGTCCTGAGAGAGCACCCCTCCCTGGCTTACTGTGAAGACCGAGTGATTGAGTGCCACCAGAACCTGAAGGGCCTCAGCAGAGGGCAAGCCATTGTGCAGTATTTGGCCTTAGTTGAGTCCCTCCCTACATATGGAGTCCATTATTATCCAGTAAAGGACAAGCAGGGCCTACCGTGGTGGCTGGGAGTCAGCTATAAAGGCATCGGACAGTACGATTTACAGGACAAGTTGAAACCTCGGAAGttGTTTCAGTGGAAGCAGCTCGATAATTTGTATTTCCGTGAGAAGAAATTTGCAGTTGAGGTGAACGACCCTCACAGAAGGACAGTTTCCAGGCGTACATTCGGGCAGACCGGATCGGTCATCCACTCGTGGTATGCCAGCCACTCTCTGATTAAAACCATCTGGGTGATGGCCATCAGTCAGCACCGGTTCTATTTGGACAGGAAGCAGAGCAAAtccaaaGTTGCCACAGCGAGAAGTTTGAATGATATCACCATGGACCTGACCGAGATCAGAGCGCCCAGGATCAGTAAGCTGTCCAGCTTAGAGAGTAAAGACCAGCTCATCATGGCCAGCAACGGATCCCTCATCTCAGCAGGATCAGCAGACTCTGAGGTGAGCGAGGAACAGAAGAAGAAGGTTGCTGACCTGAAGAAGAAACGGCAGGATCTGCAGGACTCTCTGACTCAGAAACTGGAGGAGCTCAAGAAGATCTGCCTGCGAGAAGCTGAGCTGACAGGCAGTCTGCCTAAAGAGTACCCTCTAGCCTCGGGCGAGAAGCCCCCCGTGGTCCGTCGGCGCATGGGGACAGCCTTCAAACTGGACGACCTCTTCCCCTATGACGCGGATCCCCACCTGAGGAACCTGGAGAGCAGGTTTGCCCTGCAGCAGAAGATCGTGGAGGCGGCGAAGAAACTGGCCAACGAGGCTGAGCTCTGTAAGACagtgaagaagaagaggaggaggaactgcCTAGACGCCATGAGGAAGCTGCATGAGATTGAGGACGAGATCAACGAATACAGGGTCAAGATGGGCAAGAAGCCCACCCAGAGAGCATCAATAATCATAGCAGaTGATGTGAACCCCGCCGAACTCAGCTCCCTGTCCGACAGCCTTACTCTGGACGATGACGAGGATCTGGGAGACCAGAGGCAACGGTCCCGCTCGGTGCAGTACTCTCCCCGGCCCCACCACTCAGACACCCTCAGTCTCCACTACCAGTCTGATCGACGGGCCTCAGCTCACAACCAGCTCCAGGACCTCGGCATCAACAGCCGATTACATGATGGTGAAGTCCGGGAACCGTTCCACTACAATCACGCGGACGCCTTATCGAGCCACATCAGCCCTTACAAGCCTGCCTCCAGACAGCCACGTGACGCACGCAGCATGCCTCCGACTCCACTCCTCACCCGCAATGCCTACAGCAGTACCCAGATCAGGTCGGAGGACGGCCCTCAGCATTTCCGCCAGCGGAGTGGCAGTCTGGAGTCCCAGTCTCAGTTCCTGGTCGAGACCGTGCCCCCGGCGTCCGCGTCCGTCTTGGCACGCCGCAGCAACAGCACAGAGTTCCTGGACGACGGCTCATCCTACACCAGCCAGTCCAGCGTGGAGTACTCGGCGCCCGGGAACCATACCCACCGCCCCAGGGACCGACGGCGGGGCAGGAAGAGCAATGTCTATGCCAACTCGGGCAGCATGCCCAACCTGGCACAGACTGACGCCCGCTACAACACATACCAGCCCCCCCGGGCACCGCGACCCACCACCACGGCCTACTACGTGACGGGCTACCCCAGCTACCCAGAGCCAGACCCCTACTCTAACGGCGTCTACATGTACCACAACGAGTTGGAGGGTCATTACAACATCCACCCCTCCTACAACGCCGCGCCGGCCTACCACAGACATGATGCGTACAGCAGTCGCTATGGTGACGACGAGACGGACAGTATGGCCCAGAACCCCTACGCCACGCTGAGGCCGCCCAGGAACCGCCATGCTCCGCCCAGGACGGAACACGTGACCAGGAACATCCAGAAGGCACTGGTGGAGGAGCACCTGAGAGGCTGGTATCACCGCAACGCAAGCCACAAGCAGCCACAGGCCTATGACTACAATCAGAGGGGTTCCCAGCAGAGCCTTGGCTACCAGACCATGCCCTACTCCTCAGTCTCGTCTCATCAGTCCTCTACAGCAGGAGGCCGGCCCGGTCACCTGCGTGGCGGTATGGTAGAGTACGACGTACCCCTGCCGGTGCAGCAGCATTACCCCTCCTATGGCACAGCACATTACGGCACAGCTCACCACCCCGCCTACAGCAGATAcggctcctcttcctcctcctcccagcacTCTAAGCGTTCCTGGTACAGCCCTGATGGCCAGAGATGCTGTGGCTTTGTCCCTGCCAgctcttcctctgcttcctccctcctcgcctcccccttctcttcctcttcccctcgcTGTGGGCTCCGGCTGAGCACAGGGCTGGTAGGCCAGGGCTCTAGTCCCCATGCAGCAGCCCCACAGCTCCAGAAGCCAGATACTTAAAGTCTCCTTTGCTAAGTGTAGCCCATGATAGTAATCCTATGTAGATGTGAACCAAACCGATCCATTCATCGACAGCCAAACCGATCCATTCATCGGCAGCCAAACCGATCCATTCATCGGCAGCCAAACCGATCCATTCATCGGCAGCCAAACCGATCCATTCATTGGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698884 lncRNA upstream 40864 46370772 ~ 46370994 (+) True G614004
TU698860 lncRNA upstream 56450 46354942 ~ 46355408 (+) True G613982
TU698527 lncRNA upstream 125530 46282497 ~ 46286328 (+) False G613666
TU698918 lncRNA downstream 19465 46470037 ~ 46470483 (+) True G614038
TU698963 lncRNA downstream 20350 46470922 ~ 46471113 (+) True G614083
TU699119 lncRNA downstream 73263 46523835 ~ 46524124 (+) True G614237
TU699147 lncRNA downstream 95246 46545818 ~ 46546118 (+) True G614258
TU699166 lncRNA downstream 116746 46567318 ~ 46567677 (+) True G614277
XM_021609459.2 mRNA upstream 69888 46338813 ~ 46341970 (+) True LOC110527877
XM_036983350.1 mRNA upstream 202305 46111482 ~ 46209553 (+) False foxp1b
LOC110527880 mRNA downstream 11138 46461710 ~ 46468087 (+) True LOC110527880
XM_036984486.1 mRNA downstream 27772 46478344 ~ 46479954 (+) True LOC110527881
XM_021609468.2 mRNA downstream 133193 46583765 ~ 46596389 (+) True LOC110527882
LOC110528958 mRNA downstream 179019 46629591 ~ 46638492 (+) False LOC110528958
XR_005052732.1 mRNA downstream 183642 46634214 ~ 46634266 (+) True LOC118965406
TU698525 other upstream 132525 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 2383630 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2404951 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2579978 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2826962 43584020 ~ 43584896 (+) True G610563
TU699203 other downstream 181550 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1388816 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2376255 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3121748 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 3136298 49586870 ~ 49620168 (+) True tafa4b

Expression Profile