RNA id: NM_001165143.1


Basic Information

Item Value
RNA id NM_001165143.1
length 1545
RNA type mRNA
GC content 0.41
exon number 3
gene id praf3
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46457015 ~ 46460324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCCAGACATACGTTCTGCAGCCTACAACAAGCGTATTCATTATATTTCATAGTCTTCAAACAGTAGCAAAATGGCTAAGGTAGAACTCACACCGCTGAGACCCTGGGACGATTTCTTCCCAGGTTCTGACCGATTTGCTAAACCAGACGTGAGAGATCTACCTAAATGGAACAACAGGGTTGTCAACAACTTGCTTTACTATCAGACGAACTATTTGGCGATGGCTGTCATGGTTTTCCTTATTGTGGGGTTCCTGAACCCTATGGAGATGTTCATGGGCATGGCGGTGGTGTCCTTGGTCTTCCTGGGCTCAGTGTGGGCTGGAGAGAATAAGGCCATGATCAAGGACTTTAAGAGGCAGAACCCCACATTGTTTGTCATGGCAGTGATGCTTGCCAGCTACTTCCTCATGTCTCTCTTCGATGGCGTCATGGTCTTCATATTTGGGATCACGTTTCCTCTTCTCTTGATCTTTGCACATGCCTCATTTCGCCTTCGCAACATGAAGAATAAACTGGAGAATAAAATGGAGGGGGCGGGGCTAAAGAAGTCACCAATAGGTATTCTACTGGATGCACTGGGCCAGCAGGAAGAGAGTCTGCAAAAGATCCAAGAATTCTTGGAAGGAAAACTAAAGGAAGGATGAGAACTCCACACAGACGCCACAGTCCCTGTGTTGTCGTAGGTCCCCTATCAGCCTCCCTGGCCTCTGACCGGATGGGAAAGGATTCCTTTCCACACCCCCTTTTAACGTGCAGTCTCATTGCATGCAGTCAATGTTGAATGGGAATGATTGTAATACATCTCAGCTTGTTTGAAGACTTCAGCTAGAAACCGTATTGCCTATTGCACATgcaagtgtatgtgtgtttagACTAGAGAACATGTGTTGAAAACACAAGCGTTAGTTTAACCTCAGGGTATTTGTTACTCCCACCCAAAATTTGTCAGagcacttcttttttttttttttaagtagtgATGTCTGCATCTCAATAGTTGACATGTGAGTCTTCCCCGTTAAATGGATTTGTGTGTGTAGTTGGGCAAGTGTTTCCAAATCCTGTATGCAATATTTATACAACTTATTTATATTTTGTGACTTTTGTAAATATAAGGAGTGAAAGTATTGTGGCGTTAAAAGCAAAACTGTGACCGGACTGATTGAGGTCACTTGGTTTGAAAAATAAACAGAACTAGGTTTATTGTTCCATAGATGAATTCACAATTTATCTCGCAAATTAAGCAGTAGGGAATTAGCTTTTTAAAGTGCTGTGCATTCTCCCTTTTATTGATGCAAACATTGCAATGTGAAAATGCTGATTTGTGGAGAGTAGACCTTTACTTTGCTACTAAGCTGTACTACCTTTCTTATTGCTCTCTTTCCTCAGAAGATCTGGAGGTATTTAATCTGTTTAATTATTTTCAATTAAGAGAAACAACTGACCGGCTTGGCTATGAAGGAGAAATTGTGAAATCACTGTAAATTATTAGTTGTGAATTTTTGTTTTCAACAAGtgttaaataaatacagtaccagtc

Function

GO: NA

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU699050 lncRNA downstream 3072 46453714 ~ 46453943 (-) True G614169
TU699045 lncRNA downstream 5169 46450442 ~ 46451846 (-) True G614165
TU699042 lncRNA downstream 15576 46441168 ~ 46441439 (-) True G614162
TU699040 lncRNA downstream 17261 46439523 ~ 46439754 (-) True G614160
TU699036 lncRNA downstream 26519 46430267 ~ 46430496 (-) True G614156
TU699063 lncRNA upstream 6619 46466943 ~ 46468878 (-) True G614182
TU699065 lncRNA upstream 11299 46471623 ~ 46472288 (-) True G614184
TU699066 lncRNA upstream 12641 46472965 ~ 46473809 (-) True G614185
TU699341 lncRNA upstream 82627 46542951 ~ 46543226 (-) True G614436
TU699361 lncRNA upstream 105540 46565864 ~ 46566067 (-) True G614456
XM_036983363.1 mRNA downstream 82053 46341988 ~ 46374962 (-) True LOC110527878
XM_036983364.1 mRNA downstream 108872 46341988 ~ 46348143 (-) False LOC110527878
LOC110528957 mRNA downstream 123388 46317529 ~ 46333627 (-) True LOC110528957
XM_036983346.1 mRNA downstream 485003 45969430 ~ 45972012 (-) True gpr27
XM_021609453.2 mRNA downstream 706178 45735778 ~ 45750837 (-) True LOC110527871
XM_021609476.2 mRNA upstream 584994 47045318 ~ 47141529 (-) False LOC110527887
XM_021609477.2 mRNA upstream 584994 47045318 ~ 47141560 (-) True LOC110527887
XM_021611125.1 mRNA upstream 684581 47144905 ~ 47146014 (-) True LOC110528959
XM_021609478.2 mRNA upstream 800001 47260325 ~ 47282372 (-) False LOC110527888
XM_036983370.1 mRNA upstream 800369 47260693 ~ 47284791 (-) False LOC110527888
TU698246 other downstream 581315 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 1971263 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 1971610 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 2877051 43579093 ~ 43579964 (-) True G610570
TU695154 other downstream 2920050 43526691 ~ 43536965 (-) True LOC110527816
TU700211 other upstream 807999 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 2026723 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 2724100 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 2724100 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 2735280 49195604 ~ 49195970 (-) True G617632

Expression Profile