RNA id: XM_021609470.2


Basic Information

Item Value
RNA id XM_021609470.2
length 2841
RNA type mRNA
GC content 0.45
exon number 5
gene id bhlhe40
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46806447 ~ 46810462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTAACACGTAGACCAAACCACCCCTCTCTCACACATTTATCAGGGAGTAGAGCTTCTAAACCATTGCTGTGCTTGGATCTCAGAGTGACACCATCACATTGACAGTCTGCAAAGCAATAGCCTGTTGAAAGATTATTCTTTATAGAAAAAGTGTTAACTATTGAATAGAAGAACATAACAATAAtagcaagaagaagaagaaaaatatatCTTTCTTAAATTACAATATTTGCTGACTATTGAAATAGACCTGAAGAAGCCTATTTTTAGGGTTGAATTTTTTGAAGACCAATATTTGGATTTAATAAAGACGCAACATGGAGAGGATTACAAGTGCACAACCTCCTCCTTGTATGGCAAAACACCAGTTGCTGGAGATGGCAGACATGCAAGGAATGGATTTCCCAATGTACGTGTACAAACCCCGACGGGGTTTGAAGCGCGGGGAAGACAGTAAGGAGTCATACAAGTTACCCCACCGATTGATTGAGAAGAAAAGACGTGACAGAATCAATGAATGCATTGCCCAACTGAAGGATTTATTGCCTGAACATCTCAAACTTGCAACTCTGGGCCATTTGGAGAAAGCTGTGGTGTTGGAACTCACCCTGAAGCATGTGAAAGCCCTGAGCACTCTCCTGGATCAGCAGCAGCAGAAAATCATTGCATTACAGAATGGCATGCAAATCAGTGACCAGAGCAGTGTTAGCTCAGAGAACAGTGAGGAGATGTTCCGCCTTGGTTTCCACGTCTGTGCTAAGGAGGTCCTCCAGTACCTGGCTAACCAGGAGAGCAGCAAAGACCACCTGATCCCCTCCCACATGATCAGCCATCTCCAGAAAGTAGCATCAGAGGTGCTCCAGGGTCCACCCAGGCCCCAGCCAGAAGAGTCTACCCACAAACCCGTCGAGAGCATGGAAAAGCCTGCTGGTCATCCGCCTAAGGGCAACGAGGGTAACGCCAAGAACTTTGTGTCTGTCATTCAAAGGACATACCCCCACGGACATGGGGAGCAGAGTGGCAGTGACACAGACACTGACAGTGGCTATGGAGGGGAACACGAGAAACGGGACCCCAAAGGCCAACGCACAAGCTGCTACGGCAAGGAGGGGGAGCTCAAGTATGATGTCGCTGAGCGGATGGCAGGAGGTGGCATCAAGCAGGAGGGTGATGAGCCCCAGATCAAGAGGTTAAGAGCTGACTCCTCAGAGGATGAGTCTTCCTCTGGACAGGTGGTCAGCAGCCACGGAAGCTACATGAGCTTCTCCCAACACCAGACCCCACTCTGCATGCCCTTCTACCTCATCCCCCAAATGGCTGCAGCATGGCCCATGCTGGAGAAGTGCTGGTACCAAGGGGGCATGCCCCTTTTGTACCCAGGCTTGAGTGGCTCTGTAGCCAGCTTGTCTCCAGAGAAACTACCCCAAAACCTGGTAATGTCGCCCAGGCCAGGTTCCCCGGCACACCACCAGACACCTATGGATTCACCAGCTCTCTTCCAAGCTTTAAAGCAAGTCCCCCCCATGAACTTGGAATCCAAAGACTGATACACTTTTGTTGTTTGCACCCTGCTCTATGAATATTTGGTGTTGAATGAATTGCCTGCTGGAAGGCATCCAGGGAATGGGAAAACAAAGACAAGAGCACCAGCAAGCAGCTGTTTCACCCCTCAGCCCACATTCTCCCTTTGAGAGCAAACAGCAActgttacacacaaacacagtagcCACCGCCCTCCAAGCTAGCACCCATACACTGAGAGGAGCCTTGGAGCCAGTCAGCACTGAAGCTCAGTCCCTTTAGAGGCTCAAATATGACATGTTGCAAAGTTCTGAGTAACTGTAAAGAGATGGTCTACACAAGGACATGACAAAAGTGTTTGAGGGTGAGACTTACCGTGGGGATGGTTTCTCTGCACTTCTGTTTAATCTCAGAGTTAAACCCAGAATGTGATGCGCAGACAGCACAGCCCCCAGCCATTTGGACCTGCCCTTTGCACACATCAGTCTGTAATGAATGTAAGAATTGTAACGAAACCCCTGTAGATGCTGCTTGAGTTTCTACGTGTTGTAAACCTGTCACTGGAGGATGAAACTGAAACTGCAACAGACCGTCCTTTAGACTAGAATGCTACCAAATATGTCTCTGGTTTATGTTGACCAGGGTAGTCACAAAATCCATTGCTCCCTCTTCACCCACCAAGTGTACCTTGcagctaaattgatttttattctTTAAACAAGTCAGGATGGTGTCACCGGACCTGATCTGCGTCACTCATGATGTAAATACAGAAGTGATTTTAGTTTTGAGTTTGTAACTCACTACCATTCGTGCAAGTAGTTCTTGTGAGGTGATGATGTCTTGTACTTATTTTGTTTATACTACTTGTACATATCTATTTTTGATACATGACCTACAGAGTGTATTTTCATTGTGACTAGACGGAGAGAGTTTTAGCTGCCCATTTTGCTCTATGCCAAGAGAATGTGTACATAGCATTGTGCTAAGACCTGATTTGCATCATGCTCATTATTAATTTCCTGTCTGGTAAAATTCTGTCCTGATCTAAGTTTATGCTGTTGCCTTTACTTGTTCATAGCAGACAACAATTATGGCGGATGTCTAACTGTATTTGTATTAATTATTGAGTCTGTggcaaagagaggagagtgaatgtaACGTTAAAGCAAAATGTTAGTTTTATATGGAACGAGGTACTTGGATTTGTATTTTAGGATCTAACAGATGGTTGCTTGTTGTACATATTTTGTCTAGTACTGTTGACATACATTTTTAAAGATATTAATAAAGATTTTTTTTCCCATGTGGAAATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU699329 lncRNA upstream 1197 46805022 ~ 46805250 (+) True G614424
TU699327 lncRNA upstream 2631 46803525 ~ 46803816 (+) True G614422
TU699310 lncRNA upstream 28727 46777262 ~ 46777720 (+) True G614405
TU699167 lncRNA upstream 236143 46569885 ~ 46570304 (+) True G614278
TU699166 lncRNA upstream 238770 46567318 ~ 46567677 (+) True G614277
TU699562 lncRNA downstream 1339 46811801 ~ 46812020 (+) True G614649
TU699568 lncRNA downstream 7444 46817906 ~ 46818129 (+) True G614655
TU699634 lncRNA downstream 91141 46901603 ~ 46901892 (+) True G614721
TU699647 lncRNA downstream 108307 46918769 ~ 46919067 (+) True G614734
TU699656 lncRNA downstream 122755 46933217 ~ 46933444 (+) True G614743
XM_036983368.1 mRNA upstream 5676 46660325 ~ 46800771 (+) True itpr1b
LOC110528958 mRNA upstream 167955 46629591 ~ 46638492 (+) False LOC110528958
XR_005052732.1 mRNA upstream 172181 46634214 ~ 46634266 (+) True LOC118965406
XM_021609468.2 mRNA upstream 210058 46583765 ~ 46596389 (+) True LOC110527882
XM_036984486.1 mRNA upstream 326493 46478344 ~ 46479954 (+) True LOC110527881
XM_021609471.2 mRNA downstream 125826 46936288 ~ 47029549 (+) False sema3fb
XM_021609472.2 mRNA downstream 125826 46936288 ~ 47029549 (+) False sema3fb
XM_021609474.2 mRNA downstream 125826 46936288 ~ 47029549 (+) False sema3fb
XM_021609475.2 mRNA downstream 125826 46936288 ~ 47029549 (+) True sema3fb
XM_021609480.2 mRNA downstream 486276 47296738 ~ 47302095 (+) False LOC110527889
TU699203 other upstream 168493 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 527114 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 2778219 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2799540 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2974567 43829004 ~ 43831880 (+) False G610622
TU700614 other downstream 1028926 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2016365 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 2761858 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 2776408 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 3492968 50303430 ~ 50304232 (+) True G618712

Expression Profile