RNA id: XM_021609471.2


Basic Information

Item Value
RNA id XM_021609471.2
length 5209
RNA type mRNA
GC content 0.47
exon number 19
gene id sema3fb
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46936288 ~ 47029549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGCGTTTCCCCAGCAGTCAGGAGCGAATACACTTTCACCAGTAACACTGGCTGCATGTTTAGCCGAGTTTCAGACGAGGAATTCTGACAATTGATCCATTTTGAAGGAGCTGTCACATTGGACTTGTCACAACTTCTGGTCATTAAACTTACACGATATTTACTTGGAGAGACGATATTTTCAGCTGTGCCTCATGAGCATTGGACCGGGCAGCGGTAAACACACCGGGCTCCAGGTGTATCTCTATAAGGACTCCTGCAACGGGGCCACGGCACCCCGGATCTTATACATTTTAAACTTGGAGAATTGAGGCGAACGATTCCGTGGAATTCTGTTGGTTTCTTCGATGACTTGTAAGGTTGGACTTGGACTCCAAGTTATTTGTGTAGAGTAAAGTGACAATCAGCGTTCTGCGATCGTTCTATTCCTGGAGGTTGGTTTACCATGCTGTTGGACAGTCTGTGGACGGTCCACATGCTCCTGGCCCTGGTTGTCGGGGCTCTGTGCAATCACAACATCATCGACCCTCATGCTGCACCCCGCGTCTTCATCTCCTTCAAAGagCTGAGGTCCACCGGCACTGCCCAACACTTTGCCTACCTGCTCAACACGTCTGACTACCGTATCCTGCGTATGGACGAGGACCACGACCGCATGTACGTTGGCAGTAAGGACTACATCCTGTCCCTGGACCTGCATGACATCAACAAGGAGCCGCTCATTCTCCACTGGCCTGTCTCTCAGCAGAGGAAGACTGAGTGTGTTCTAAGTGGGAAGGACACCAATGGCGAGTGTGGGAACTTCATCCGTCTGATTGAGCCATGGAACAGGACCCACTTGTATGTCTGTGGTACTGGGGCCTACAACCCCATCTGCACCTACGTCAACCGTGGACGCAAACCACAGGCCGCCATGCACCTGCAGATGCCCCAGACCGGAGGGAGGGCTAGCCGCGCGGCCCAACCAAACGATGTGTCCGAAACACTGGGACTAAAGGAATACATATGGCATTTGGAGCCGGGCAAAGTGGAGTCTGGGAAAGGAAAGTGCTCCTACGACCCAAAGCTCAACAGCGTCTCAGCTTTGATCAACGGTGAACTCTATGCTGGGGTCTACATTGACTTCATGGGAACAGACTCTGCCATCTTCCGTACTGGGAAACAGACCGCCATGCGTACAGACCAGTATAACTCCAGATGGTTAAatgaCCCGTCCTTTGTCCATGTGCAGCTCATCCCTGACAGCGCAGAGAGGAATGACGACAAGCTTTACTTCTTCTTCCGTGAGACGTCTGCTGAGATGGGCCAGAGTCCCGTGACTCAGGCCCGCATCGGTCGGATCTGCCTGAATGATGATGGTGGACACTGCTGCCTGGTCAACAAGTGGAGCACTTTCCTGAAGGCACGGCTCATCTGCTCAGTGCCGGGAGCCGACGGGATTGAGACGCACTTCGACGAGCTCCGAGACGTTTACATACAGCCGACCCAGGACACCAAGAATCCTGTTATCTACGGAGTCTTTTCCGTCTCGGGCTCAGTGTTTAGGGGCTCAGCAGTGTGTGTCTACTCCATGGCAGACATCCGCCAGGTCTTCAATGGGCCCTTCGCCCACAAAGAAGGGCCCAACTACCAGTGGGTCGCCTACACTGGGAAGATCCCCTACCCTCGACCTGGGACGTGCCCAGGTGGAACGTTCACCCCCAACATGAAGTCCACCAAAGACTACCCAGACGAAGTCATCAACTTCATGAGGAACCACCCCAACATGTACAATGCAGTGTACCCAATGCACAAGCGCCCCCTGGTGGTCCGGACCAACGTGGACTACGAGTTCACCACCATCACTGTGGACCAGGTGGCCGCCGCAGACGGGAACTATGAAGTGCTGTTCCTGGGAACTGACAGGGGGACGGTTCAGAAGGTGATTGTTCTGCCCAAAGACGACCTGCAGACTGAAGAACTGGTCCTGGAGGAGGTTGAGGTGTTCAAGGTTTCAACTCCAATTACAACCATGAAGATTTCGTCCAAAAGGCAACAGCTCTACGTGTCTTCTGAGCTTGGTGTGACCCACCTGGCCCTCCACCGCTGTGATGTGTATGGGGAGGCGTGTGCTGACTGCTGCCTGGCCCGGGACCCCTACTGCGCCTGGGACGGAAAGTCCTGCTCTCGCTACTCCACCTCGCAGAAGAGGTCTGACCCCTTTAGACGCAGCCGGAGGCAGGACGTGAAGTACGGGAACCCCATCCGGCAGTGCAGGGGCTTCAACTCCAATGCTAATAAGAACACCTTGGAGATGGTGCAGTATGGGGTGGAGGGCAGCAGTACCTTCCTGGAGTGCCAGGCCCGTTCACCCCACGCCACCATCAAGTGGCACCTGCAGAGGGACAACAGTGACCGCCGGAAAGAGatgcgCTCTGACGGGCGGGTACTGAAGACAGAGCAAGGTCTCCTGCTGCGTTCTCTCCAGCCCTCAGACTCCGGGGTCTACCAGTGCACGGCCACAGAGAAGAACTTCAAACACACGCTGGTCAAGCTGCAGCTGGTGGTCCTGTCCGGCCGAGCCATCAACAACGTCCTGGTGGAGGGTGGGGGACTGGGGCCATCTGCTCTCCAGTCCAGCGCTTGGACGCCCAGCGCGGGTCAGTACAAGGACCTGCTGACCATCCTGAGCCAGCCAGAGATGGGCCTGATTAACCAGTACTGTCAGGACTACTGGCAGCTGGGAGACCCCATGATGGGAGCCATCAAGGCCAATGACATGAAAGAGCTCAAGGAGCAGAAGAAACCACGCAACCGCCGACATCACGGTGAGGGAGAGGAcgaagaggaggtggagacatGAGGGGTCCCTCAACTCTCCCAAACTTCAACCGCACCCCAGGGAAACTGGGAAAGACTCAATTCAGGAGACTGACAAGGTGAAAGAAAATCAAAACCCACAAATAAAAGAAATGGAAGTGGGAAAAAAACAAGTCATACAAACAAACACAGCCCACATCCCTTTCAACAATAAAGTATATGATACACAGTATTTATTGTAGGTTGTATATAGTATCATTCTGTGGATTTCTTTGTACTTATAGAAAAATGCTCTTTGTGTATAGGTACCTTTTGGGTAAATGTTATTGTATTATTGTTATTAATTgtattattgttgttactgtcaTTACAAAAATCTTAATCTTTCCATCTTTCGACATTGACAGCTCTGTTTGGAATGTAAACTCTGTTGGTAGTAAGCTGAAAGGGGTCATTGTGTAAACAGATACGTTAACCGAGGGTTGGGGTAGATGGGGATATAATGGTTTCTTGTTTGCCTTGACTAAATGTCAATACTCATATTCTCAGCTCACCAGGAAGTGTTTGAACATACAGTAACCTCACAATCCGTGCATAAGGACAaagactcctgactccaatttcAGAGGATGCACAAATGGCCCCACTCATTGGCTAGCTGTCCATTCTCCCTGTGAACCTGTTGTCTAAATGACTATGTTGAATACTGTTGCTGCTAAGCATAATTGGCTCACCTAATAGGTTGATGCTATTTATTTTCGGCTTCATTGGTTATTCCtcactgtacagtatgtgccaTTAACTCAGGCAAACCAATTGTTAAAAATACAGTGTTGCCATGTAGCCTATGCATGAAATCATCTCTAGATTACCAGAGTccgtgaaggggggggggggattgaaaCCAAGGTTATTATTGAATGGCCAGGTCAATCGAATAGATTGTTTAACAAAGAATTAAAAAAGGATTAAAACCTTACCTTTCAGCAGCTAAATTGTGGTAAATGACATTGTGAGAATCAGAAAGTAAACTTACtcagaagagaaaaaaaacactgtaGATACTtatcaaataaatattttaagGAAGTCTACGAGCTCTGTTTGGTATATTTTGCAATCTAAACATCGAAtgggactgagtgtgaagtacaGTAAAGGGTCAAGGTTGTGCACAAAGGGCATTATTCTCTTACCTTCAAATTATTCAATTTAATCTTATGGAAGGTATAAGATATTCAAAACATTGGCCAGGGCCAAACCTAGCACACTTTGGCCAAATACATTTCCTTTTGGTCAACAAAAACAAAGCAGAATTCAGTTTGAGATCAAGCGATGCTAGAgcggaagaggcgaagcgagagggatAACTGGGCCCAAAATCTGTCTTCACCTGccattttttcttatttttttcctcTCACCAAGcagagtttttgtatggaggtcaaagAAAGTGTAGAATTTGgataacaaaaaatgtaatggcttatttgctacttGTGGCTTATTTGATCGAACAGAAGTTTCGCAATGCTTAAGGTTGTTACGAATGTACTGATATAAGAAGGACACGTCACCtcccggcaactttgagaaaaaaaacactttgtATCGGAGTTGTGCCTTGTATCACAATCGTATCTGccttctcattggctagaatggtcccacctgacaTTGCCTCCTACCAACTACCTTCCATTTTTGAAGgcatttattttcattgttagagAGGTCAATGGAGTATCTGatcaatataatggataatctATGGCAATGCCCAGATCACTTTCACTCAGCAGCCATGTTGGTTCAAACTAAGAGTCATCTCTTTTCATTTACCGgtgtgaaaaaaataaatgtcctcctTACACAACAAAACATCGTAACAACATTGTGACAATAACCAAAATATTCATTGTGTGCATGAATATGTATttgtactgtaattatgaaacaaaaaaaaactgttgtaGTTTTTCTGTTCTTCAAGTGTACAGTATGGTCAAACGTCAGCGAAGACATGAGGGACAGCCTCAGTGCAGCATAAAACAGAACGGAGGAGAATTACTATGTGTAATGTACCGACAGATATTGATAGGCTCTCTTTTCCACGCTTCACTATGGGATAGTATTCATTCCCAGAATAAAACCAGACGGCCCCTGTTACTCTCCTCCAGTTGAAAACAGGGTGTTACAGCAAAAAAATGATTGTACAATTTCTTGGTATTTTATGGTGTCTTTTTTTTCTTTTGGTTTTGTATTTCTTTTGTGTTCTTTTTGCTATCAGTTAAGATTCAATGCACAGAGGTGATGTTATGGTAATTACTTGTGTAAATTACTTTCTCTTCCCTTTCCATTGTTGTTGCTGACTAATAAATTAAAGCTCTATATTTTATAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU699656 lncRNA upstream 2844 46933217 ~ 46933444 (+) True G614743
TU699647 lncRNA upstream 17221 46918769 ~ 46919067 (+) True G614734
TU699634 lncRNA upstream 34396 46901603 ~ 46901892 (+) True G614721
TU699568 lncRNA upstream 118159 46817906 ~ 46818129 (+) True G614655
TU699562 lncRNA upstream 124268 46811801 ~ 46812020 (+) True G614649
TU699759 lncRNA downstream 64449 47093998 ~ 47094793 (+) True G614841
TU700102 lncRNA downstream 162167 47191716 ~ 47192015 (+) True G615153
TU700110 lncRNA downstream 171959 47201508 ~ 47201748 (+) True G615161
TU700121 lncRNA downstream 177892 47207441 ~ 47207658 (+) True G615172
TU700123 lncRNA downstream 179414 47208963 ~ 47209245 (+) True G615174
XM_021609470.2 mRNA upstream 125826 46806447 ~ 46810462 (+) True bhlhe40
XM_036983368.1 mRNA upstream 135517 46660325 ~ 46800771 (+) True itpr1b
LOC110528958 mRNA upstream 297796 46629591 ~ 46638492 (+) False LOC110528958
XR_005052732.1 mRNA upstream 302022 46634214 ~ 46634266 (+) True LOC118965406
XM_021609468.2 mRNA upstream 339899 46583765 ~ 46596389 (+) True LOC110527882
XM_021609480.2 mRNA downstream 267189 47296738 ~ 47302095 (+) False LOC110527889
XM_021609479.2 mRNA downstream 267694 47297243 ~ 47302095 (+) False LOC110527889
XM_036983371.1 mRNA downstream 267930 47297479 ~ 47302095 (+) False LOC110527889
XM_036983380.1 mRNA downstream 481451 47511000 ~ 47524578 (+) False LOC110527899
XM_021609498.2 mRNA downstream 481452 47511001 ~ 47524578 (+) False LOC110527899
TU699203 other upstream 298334 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 656955 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 2908060 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2929381 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 3104408 43829004 ~ 43831880 (+) False G610622
TU700614 other downstream 809839 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 1797278 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 2542771 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 2557321 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 3273881 50303430 ~ 50304232 (+) True G618712

Expression Profile