RNA id: XM_021609478.2


Basic Information

Item Value
RNA id XM_021609478.2
length 4502
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC110527888
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47260325 ~ 47284791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTCCACTGGGCCACACAGTGGTTGACATGTGTCTGGCTCCAGACTGTCTTGACCTCCACATTGGACACCTGCCCCTCCACAACCCCTAGCCCTGTCAACTTCTCTGTGGTCTACACCATGCCCTTCTTCCAAACAAAGAGCCCCATCCAAAACATAGTGACCAACTCAATGTACCAGGAAGTGTATGTGGCATCTCAGAATGTGATCGAGGCTGTGAACATGAGTTTGGAGAAGGTGTGGGAGCTTCCTACAGGCCCAGTGGGCGGCCCTGAGTGTAAGATTTGTGATTTGTGTGACGTTGACAAGGATCCCAACTTCCTAGAGAACACTGACAATGAGGTATTATTGTTGGATACATTCTTTATGTATTTATACTCTTGTGGGAGTTCTCAATATGGTGTATGCCATTTCCACCAACTTAAGACAGATGGACAACCACCCAATAAGAATTCATCTAAATGTTTATTCAGAAAAGAATCTAACTCTGCTGCCTATTGTCCTGACTGCCTTGCCAGCCCGCTGGGCACCAAAGTCACCATGGTGGAGGAGGGACAGACTGTATACTTTTTTGTGGCTTCCACTGTAAATGATAGCATGACACAGAGATATGACAGGAAGTCCATATCAGTGCGCCGACCATTGGCATCAGAAGACGGTTTTTACAATGACGTGCGGGGACTGACCGTTCTGCCTAGCCTGCGCAGGACCTACAACATTGAGTATGTCTACAGCTTCTTCACCCAGGAGTTTGTCTACTTCCTGTCCGTCCAGAGAGAGAGCCCTGACCAAGAGTTCTCCCCGTTTCAGACACGGCTGGGCCGCCTGCCGAGGAATGAGTGGGAGATGAGGAGGTACCGGGAGGTGGTTCTGGAGTGCCGGTTTGAACCCAAACGGAGGAGAAGAAACACGGTAAGCGGGAGTGAGGCCTTTAAGGATGTGGTGTACAACATGGTGCAGGCCGCCCACTTTGGGAAGGCAGGCAGTGAGCTGGCGGATGAACTTGGAGCAGAGGAAGAGGATGACATCCTGTATGGAGTGTTCGCCGTCACAGATGACAATAGGGTCACAGAGCACGACTCAGCCCTCTGTGCCTTTCCAATGGACAATGTGAACAAGGCCATTGATGATGGGGTGGATGACTGCTGTAAGTCTGGCCCAGAGCAGCTGTCCCGGGGACTTTGCCACTTCCAGGCCTGCGAGAGCTGTCCTCATGAGAGCATGGAGAACAACGCCACCTGCAGGGACCACCCCACCATGGTGTCTAAGCCCTATTACAGAGTGGACCTCTTCAACAGGCAGATGAATGACATCCTGCTCACCTCCCTGCTTGTCACCACCATAGAGAACAAGACCGTGGCACACATTGGCACCTCCACTGGACGGCTCCTCCAGCTTGTTTTGAGAAGATCAAGCCCTATTATCTTTGCCAATTACACCTTGGTAGAGAACCAGAGGGTCTCCCCAATTGCTGCTGTGTACTCGTCAGAATCTCTACTGTTTGTGGTTGGAGACAAGGTGATCCAGGTGCCTCAGAGAGGGCCAGGCTGCCAGCACTTCATGACCTGTGCCATGTGCCTGACAGCCCCTGAGTTTATGGTCTGTGGCTGGTGCTCTGGAGAGTGTTCCTGGGAGGAGGAGTGCAGTGGCCACTGGAGGAACGAGTCTTGCCCCCCTGGTATTACCGAGTTCTTTCCTAAGACAGCTCCCCCTGATGGTCAATCAGAGCTGACTCTGTGTGGCTGGGAGTTTCAGTCTCCCCTGAGGCCTGCCATCAGCTCCAGAACCCACCtggtgagactgggacagacagCCTGCGCCGTGCTGCCACTGAAGAGCAACAACACACACCTGGTGTGTAAGATCCACTCTGGGCCCATTGAGCTGTCCAAATCAGTTAACATCACTGTGGAGGTGCATGAGGAGAAGATAGAGGGCCGCTACTCCATCGATGGAAAATCAGAAATGCCAGGATTTACCTTTGTGATTCCCAACATCACAGACATCCAGCCCAACTACGGGCCTCGTGTTGGGGGAACTCTGATTACTGTGACTGGGCCTCACCTGGACGCTGGGAAGAACAGGAGGGTCACTCTGAATGGAGATCCCTGCCCAATCACCAGTGTCACAGCGCCCAGAGGGAACATGTCCTCCATCatctgtctgtctcagcccatCGCGGAGGTGAGGGACGTCCCCCTCACTGTGTTCATAGACAAGTCACCTGTCCTCACCACCAAAGTCTTCTACTACAAAGAAAACCCAGAGGTCACAGCTGTCCTCCCAGACTGCAGTTTCGACAGGGGGTCAAAGATAATCATTGAAGGGAAGAACTTGGACTCTGTTTACAGGACCATCATTCGCTTTAAGCCCAACGAGGGACACCTGAAGCCTGTCATCAGAGTGTGCAAAGGCAAGTCTTTGCCTACACGGATGGAGTGCATAACTCCTGCTCTCCTCCGGGAAGAAACAGAGGAAGGGGAGCTCTCCTTTGATATGGATGGAGCTGTTGGACTGTGGAATGGAGAGTTCTCCTACCACCCCTATGGCGAGCCCATACCCTTTGAAACTGAGGGCCATGTACTTAGGCTGTACCATGGGCAAGATGAAGTGTCACTGCATCACCAGAAACTGAACCTTGTGAGTTCCTGCATGACAATCACTATGACAGTGGGAGGAGTGGATTGTGACGCGAAAGTCCTGGACAATGAAATCACCTGCAGGATCCCCAGAAACGTAACCATAAGTGAAGGACTGCCTGTGAAGATCTCCATCAATGGGCAGGTTCACAACGTTGGGGCTGTGGTCCTGGTCAGTAATCACTACATGGTGGGCATCGTACTGGGGATACTGGGGGCCCTGGTGGCGGGGGCTGTGCTGGCCTTCGTAGTCATGAAGCACCTGAGGAAGCAGAAGAAAGACTCTCAGGTGGAGACCCGTTTGGCCCAAAACCACAACCGCTCCAACAGCAGTAGTCTGGAACTGTCATCTGTAACTGACTACAGAAGAGTAGTCCTGCCTCAGAGGCCAAGTTCGGCTCTGGGAAGCCCAGTGGTGTTCCCCAGTCTGGCCTACCCTGCAGGCAGAATGGACCCCACACTCACCCCCCTCCTACCCCCTGAGAAGATCTCCATCTCCAGCTTCAGACCAGAGCTCCTGGAAGAGGTGAAGGATGTGCTGATCCCAGCAGACATGCTCATTGTCCAGCATTGCCAGATCATTGGCAAGGGTCACTTTGGCACAGTTTATCATGGCTACTTCACAGACCACAACAACAGAGAAATCCATTGTGCTGTCAAGTCATTGAACAGGATCACAGATGTAGAGGAGGTAGAGCAGTTTCTGAAGGAGGGCATCCTGATGAAGGGGTTCCATCACACCAACGTTCTCTCTCTGCTGGGCATCCTGTTGCCTCAGGAAGGGCTACCCCTGGTGGTACTACCTTATATGAAACACGGGGACCTCCGCCACTTCATACGCTGTGAGAAAAGGAACCCCACAGTGAAGGACCTGATTGGCTTTGGGCTTCAGGTTGCCAAGGGGATGGAGTACTTAGCACACATGAAGTTTTTGCACAGGGACCTTGCAGCACGCAACTGCATGCTGGATGAGTCGTACACCGTGAAGGTGGCAGACTTCGGCATGGCCAGGGATGTGTTTGATAAGGAGTACTACAGCATTCAGGACCACAGGAAGGCTAAGTTACCAGTCAAGTGGATGGCCATCGAGAGCCTCCAGACACAGAAATTCACTGCCAAGTCAGATGTATGGTCATTTGGGGTGTTGATGTGGGAGATGTTAACGAGAGGAGCAAGCCCCTACCCAGAGGTGGACCCCTAtgacatcacacattatctactgaAGGGCAGGAGACTCCCCCAACCACAGTTCTGTCCTGACCCTTTGTATGCCATCATGCTGCAGTGTTGGGACCCAGACCCAGAAGTGAGGCCCAGCTTTGCCACGCTGGTGTCTGCTGTCCTGACCATCCTGTCTGGCCTGGAGGGGGAGCACTACATCAACCTCAAGGTCACCTATGTCAACCTGGACCAGCCACGCCCCTATCCCGCCCTCACTGAGTCCGCAGACGAGTGTGATTCCTCAGACACTGAAGACACACGCTCAGTGTCCTGATGTCACACCAGGACAGGTACATGTAGTATGGTTTGGTGCTATGAGCACAAGGACCTCAAAAAGTCTAACTAAAGATTGTTGATTATCTTTTACTACATAGTGTCGATAGGAAGCAGTTGCAATGCACAAAGTCTAAGGGACTTGAAAGTTCTTCCCCCATTCACATTATAGTATACTACCTGGCAAAGTTTTTTGTATTATAAGAGTGGATGTAATGTCCATATGTTTTCTCTTAATTGTTTTTGAGATAAAGTAATTATACTGTATCATTTGGATCATACTTTTACAAAACAAAATGGACCCTAACGTTTTAACAGTGACCTGttattgttacttttatttaatgTGTGACCTTCCTGGTCCCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700205 lncRNA downstream 29171 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 30858 47229181 ~ 47229467 (-) True G615254
TU700200 lncRNA downstream 33598 47225799 ~ 47226727 (-) True G615251
TU700135 lncRNA downstream 44881 47215166 ~ 47215444 (-) True G615186
TU700127 lncRNA downstream 48847 47210856 ~ 47211478 (-) True G615178
TU701090 lncRNA upstream 143480 47425852 ~ 47496066 (-) True G616058
TU701146 lncRNA upstream 258537 47540909 ~ 47541186 (-) True G616112
TU701196 lncRNA upstream 365171 47647543 ~ 47749086 (-) True G616162
TU701394 lncRNA upstream 726424 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 764544 48046916 ~ 48047153 (-) True G616358
XM_021611125.1 mRNA downstream 114311 47144905 ~ 47146014 (-) True LOC110528959
XM_021609477.2 mRNA downstream 118765 47045318 ~ 47141560 (-) True LOC110527887
XM_021609476.2 mRNA downstream 118796 47045318 ~ 47141529 (-) False LOC110527887
NM_001165143.1 mRNA downstream 800001 46457015 ~ 46460324 (-) True praf3
XM_036983363.1 mRNA downstream 885363 46341988 ~ 46374962 (-) True LOC110527878
LOC110527117 mRNA upstream 7118 47289490 ~ 47294719 (-) True LOC110527117
XM_021609481.2 mRNA upstream 20318 47302690 ~ 47337079 (-) True LOC110527890
XM_021609484.2 mRNA upstream 54863 47337235 ~ 47345245 (-) False LOC110527893
XM_021609485.2 mRNA upstream 54863 47337235 ~ 47345317 (-) True LOC110527893
XM_036983372.1 mRNA upstream 63008 47345380 ~ 47357081 (-) True LOC110527892
TU698246 other downstream 1384625 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 2774573 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 2774920 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 3680361 43579093 ~ 43579964 (-) True G610570
TU695154 other downstream 3723360 43526691 ~ 43536965 (-) True LOC110527816
TU701964 other upstream 1204675 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1902052 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1902052 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1913232 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 2012883 49295255 ~ 49297248 (-) True mustn1b

Expression Profile