RNA id: XM_021609481.2


Basic Information

Item Value
RNA id XM_021609481.2
length 5263
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110527890
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47302690 ~ 47337079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGCCTTTTTAGAGATTCCAATCAAACAACTGAAAAGCAGCTTGCAAAGTGGCCCCATCATCATTCTTTCCGCTACAGGCAGACAGAAAACGGACTAAAATCTCACACCATATCTAGCACCTGTAAATAATGATTTATGTTTTGTTATAAATCTGTATCAGGTCTCCATTTAGTTATTAAAGATTCTGTGAGAAAGGTCTGTTGCACCAAAATCGTTGATTTGATCAAATCCAATGGGTATCGAACAGATCACTAAAATATCAACTCAAGCCGTGGATTAACAGTACTATTTAATGTGACTGATCCTGGGGGTGCTATAGAAAATGATTTTGTCTATACAGCAGAGAAACAGATGCATCTTTATCATTTCCATGTGATTGTGTGAATCACTATTGTTTTAGTTGAACATGTTTCAGTAGTTAGAACATGATATTCTACAGGTGtgtatgagaatgtgttctcatgTCGCTGCCTTTCTAATCTCCCCTGCAAAGTGACGGAGTTCCATCATAAAAGGGGGAGGGTACTACATATAGTACAGCTGCATACACATATAAAGGCTAGTCCACCTAGGGATTTCTTCACAGACGGCCGCATGATAATCTCAATCTGTGCCCATTAGTGcactgagagagaagagggttcaacagagagagcgaggcagtgACATAAACAGAGAGCAAGTGGGAGAGAAGAGGGTTcaacagagagagcgaggcagtgACATAAACAGAGAGCAAGTAGGAGAGAACTTTAAAGGGATTTGGCAGTGATTTGTAGAATCTCAGTGGCGTAATATGGTGTTTTTTCTACTTTTCCGTGATTCAGACAATGCTACACACTAAAGCCTTGAAAGCCAAAATGTTCGATCCTTTTTTGCTAACTAAAAAAAATGTTATGTTATTGAAGGTTTTGAGTCCATTCCAGTTATTTTTTAGAAAATACATATAATATCTGAGATGTTAATGGATTTACTTTTTGCTAAAACAATGAAGAATCTGGCACTGAACATCATCACATATTGAATATGGGAATAGACCTGTTTGGGAGTGTTGGCGTGATGGATGAAATCAAGACTGGTCCAAATGAAATGTTCAGGTATCACATGTAGAGGGAGAAGCCTGGTACTTTAACACTGGATACAGGAACCTTTGGTGGCCAGAATCATGATATCACAGTGCCACACATCACAGTTCTGCTGTCAATTTGGTCCACTGTTTGGATGCCATGTAACTACATTGCTCAGGTTACTGTGGATGCTGTTTCTGGGTCTAAGTCCAGAGTCATGGGCTCAGCAGGGCACACAACCACACTCCATCAAGATCAAGGGGGACATCACCCTGGGTGGCCTGTTTCCAGTGCACTCCCGTGGGCCAGCCGGTGTGCCCTGTGGGGAGAtcaagagggagaaggggatccACCGAATGGAGGCCATGCTGTATGCGCTGGATCAGATCAACAGTGACCCTGACCTCCTTCCTAACATCACCCTGGGGGCCATGGTCCTGGACACCTGCTCCAGAGACACCTACGCTCTGGAGCAGTCACTCACCTTCGTCCAGGCCCTCATCCAGAAGGATAACTCAGACGTGCGTTGCTCCAACAATGAGCCACCCATTATTCGCAAACCAGAGAGGGTGGTGGGAGTAATCGGGGCATCAGGCAGCTCTGTGTCCATCATGGTGGCCAACGTGCTGAGACTCTTTGCGATCCCCCAGATTAGTTATGCGTCCACGGCTCCAGAGCTGAGTGACAAAAGTCGTTATGAGTTCTTCTCCCGCGTGGTCCCTCCTGACTCCTACCAGGCCCAGGCCATGGTGGACATCGTCAAGGCTATGGGGTGGAACTATGTATCTACACTGGCCTCAGAAGGAAACTACGGTGAGAGCGGCGTCGATGCCTTCCTCCAGATTTCTCGAGAGGCAGGAGGTTTATGCATCGGCCAATCCATCAAAATCCCTCGAGAGCCGAAACCAGGTGGATTTGATAAGATCATCAAGAGACTAATGGAGACCTCTAATGCTCGTGGGGTCATCATCTTTGCCAATGAGGACGACATCAGACGTGTCTTGGAGGCAGCAAAGAGGGCTAACCTGACGGGTCACTTCCTGTTTGTGGGCTCTGACAGCTGGGGGGCCAAGAGCTCCCCCATCCTGGACCAGGAGGATGTGGCTGAGGGGGCTGTCACCATCCTCCCCAAGAGGGCCTCCATCGATGGGTTCGACAACTACTTCACCTCGAGATCTCTGAAAAACAACAGAAGGAACATCTGGTTTGCAGAATACTGGGAGGACGACTTCAAATGTAAACTCACTCGACCAGGTATCAAGTACGACCTTGGTAGAAGAAAATGTACAGGGGAAGAGAGAATTGCACAGGAATCTCAGTACGAGCAGGAAGGGAAAGTACAGTTTGTGATAGACGCGGTGTATGCCATGGCCCATGCCTTACACAGCATGCACCTGGACCTCTGTCCGGGCTCCATGGGCATCTGTGAGAAGATGGACCCAGTGGAAGGGAGTCAGCTGCTCCATTACATTCGCTCAGTCAACTTTAATGGCAGTGCAGGGACTGGGGTCATGTTCAATGAGAATGGAGATGCTCCTGGTCGCTATGACATCTTCCAGTTCCAACTTTCCAACACCACCAACCCTGGCTACCGGTGTATTGGCCAGTGGACAAACAATCTGCGACTCAATGCTGAGGAGATGCAGTGGTCGGGTGGGGACCGTGCAGTCCCTGACTCGGTGTGCAGTTTCCCCTGTGAgctaggagagaggaagaagatggTGAAGGGTGTACCCTGTTGCTGGCACTGCGAACTGTGCGACGGATATCAATACCAGCTGGATGAGCTAAACTGTGACATGTGTCCCTTCGATATGCGTCCCATGCCAAACCGAACGGGCTGCCGGTCCACACCCATCATCAAACTGGAGTGGAGCTCCCCCTGGGCCATCATCCCTGTGTTCCTGGCTGTCCTGGGCATCCTGGCCACCTCCGGATGCATCATCACCTTCATCCGCTTTAACGACACCCCCATCGTCCGAGCCTCCGGTCGGGAGCTCAGCTACGTTCTCCTGACAGGCATCTTCCTCATCTACCTgatcaccttcctcatgatcgcAGAGCCCAGCGCCCCAGTGTGTGCATTCCGCAGGCTGCTGCTGGGCCTGGGCATGTGTATTACCTACTCAGCTATGCTCACCAAGACCAACCGCATTTACCGTATTTTTGAGCAGGGCAAGAAAGCAGTCACGCCACCTCCATTCATCAGCCCTGCTTCTCAGCTGATCATCACCTTTATACTCATTGGAGTGCAGTTACTTGGCATTTTCATCTGGTTCGGAGTGGTGCCCCCACACACCATCATAGACTATGAGGAGCAGCGGCCGCCCAACCCAGAGTTTGCACGTGGGGTCCTGAAATGTGACATGTCCGACCTGGCCCTGGTCCTCTGCTTGAGCTACAGTATCGTGCTGATGGTGACCTGCACTGTGTATGCCATCAAGAGCAGAGGGGTGCCAGAGACCTTCAACGAGGCCAAGCCCATTGGCTTCACCATGTACACCACCTGTATCATCTGGCTGGCCTTTGTGCCCATCTTCTTTGGTACAGCACAGTCTACTGAGAAGATGTTCATCCAGACCACCACCCTGACGGTGTCCATGAGCCTGAGTGCCACTGTGTCCCTGGGCATGTTGTACGTCCCTAAGGTCTATGTCATCATCTTCCAACCGGAGCAGAACGTACAGAAACGCAAGCGCAGCTCCAAGGCTGTGGCTTCCACAGTGACCTCACAACTCTCCCAGAAAGACGACAAGCAGAACGGAGAGTCCAAAAGTAGTGCCATAGTGCCTGACCGATCACAATAATCCAGCAGGAAACCAGAGATGAATACGACACCTGGCACCTAACAGACGACAGCTTATAATGGTCTCCCTTGGCAAAGCACTCCTTCACATGCAGAgagggggctcccgagtggcgcagcggtctaaggcatcactacagaccctggttcgattccaggctgcatcacaactggctgtgattgggagtcccatagggcggcgcacaattggcctagcgtcgtccgggttagggtttggccagggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaagtaaaattcaaataaatgaataaaagcCAGTTTTTGATCAGTGGTGAAGGCTACATTGTCTCATGGGTGGAATGGAAATAAAGGAAAATGGAGATGCTACCTTTTCTGTAATTTGAAATACACACTCACTGACTCGCCACAGATGCTGTGACCTGACTGTAAATGGAACGCATTGGATCATCCTGGATCATCCTGAATCCTGAACAGAACacaatgaacattgtggacagctTTGCTAGATTTCAGGACAAAGTCTCCTTTTACATTAGGATATGTCTAAGCGACCATGGCAATTAATTAGTTATCTTTAATTTCTCTCAGGACAATTAGTTGGATCAATAGTGAATAAAATGTTAAACCTTTTCCTCACTGGAAGACCTAAAGTAGGATCCTTTGAGAACAAGCTTAGTTGTTTACGTGATTTATCAGCACTGCATGGGTTGTGAGTTTGTGTGTACATTATACGAATGTTTCCACAGTACTGTTTGTATGGGTGTCACAACTTTGACACGTGGTTATACTTTACTGATTACACTGGAAGGAACTAGCTTCTCTATGCACCACTTTATCCTGGAATAACTAGTGTTGGGTTCTTGAATGACATAGTGATAAAGAGAAACAACTGTAGGGAATTCTGATTACTGACATCAATACTGCCAGATCTCATGTAAGGTACCATTTTAATATTATAACATTTTCTGttatgctttggtttagtttgcTTTAGCAGTAATAACTTCTATACGATGCTACTTTCTAAATTGAGAAGCAGTGGATCTGAACAGGATATTGTGTTCTGAGACAATTGTTGttagaatcacaacaacacatggTAGACACTAGACAGCAACTTATGGCATTTCCGTAGATTGTTCCTAATTTCTTTATAGTGCTGCTGGTGTTGCGGTTGTGAGAACAGTTGATGGTAACACTTGAGTTCATTGATAATATCACTGGTTTTAGCATCAATGATCACTTGTGTTCTTCAATATTGTGCCATTAAATCACTCTTTTGTGTTCTCAAAATGTATGTAATGTTACAAGTTTCCCTTAAAATAAAATTACTATATAATTTAAATTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700205 lncRNA downstream 71536 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 73223 47229181 ~ 47229467 (-) True G615254
TU700200 lncRNA downstream 75963 47225799 ~ 47226727 (-) True G615251
TU700135 lncRNA downstream 87246 47215166 ~ 47215444 (-) True G615186
TU700127 lncRNA downstream 91212 47210856 ~ 47211478 (-) True G615178
TU701090 lncRNA upstream 88773 47425852 ~ 47496066 (-) True G616058
TU701146 lncRNA upstream 203830 47540909 ~ 47541186 (-) True G616112
TU701196 lncRNA upstream 310464 47647543 ~ 47749086 (-) True G616162
TU701394 lncRNA upstream 671717 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 709837 48046916 ~ 48047153 (-) True G616358
LOC110527117 mRNA downstream 7971 47289490 ~ 47294719 (-) True LOC110527117
XM_036983370.1 mRNA downstream 17899 47260693 ~ 47284791 (-) False LOC110527888
XM_021609478.2 mRNA downstream 20318 47260325 ~ 47282372 (-) False LOC110527888
XM_021611125.1 mRNA downstream 156676 47144905 ~ 47146014 (-) True LOC110528959
XM_021609477.2 mRNA downstream 161130 47045318 ~ 47141560 (-) True LOC110527887
XM_021609484.2 mRNA upstream 156 47337235 ~ 47345245 (-) False LOC110527893
XM_021609485.2 mRNA upstream 156 47337235 ~ 47345317 (-) True LOC110527893
XM_036983372.1 mRNA upstream 8301 47345380 ~ 47357081 (-) True LOC110527892
XM_021609487.2 mRNA upstream 22792 47359871 ~ 47389443 (-) False LOC110527894
XM_021609488.2 mRNA upstream 22792 47359871 ~ 47389443 (-) True LOC110527894
TU700211 other downstream 32619 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 1426990 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 2816938 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 2817285 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 3722726 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 1149968 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1847345 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1847345 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1858525 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1958176 49295255 ~ 49297248 (-) True mustn1b

Expression Profile