RNA id: XM_021609505.2


Basic Information

Item Value
RNA id XM_021609505.2
length 3717
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110527904
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47606510 ~ 47612614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGAGCGCTCTAAAACGCAGGCTTGTGTACATAGATCTGGTTGCACAACTTTCGAGTAACCAATGCCTACTACGGATGGGCCGGAACTGAGTTCAACGCAAAATACAAATGTGCTTTTTCTGGCTACATTGTTCCACACGTATAGGAGGATCCCTTAATGTAATGGTTACTGTATATTCTAAATAGCAACATTATGGCTCAATCGCAATGTTTGGACGATTCACCTGGAAGGTGGCCGTCAACAAGACAGGGAAATTATTTGAATGTACAGGAGTTGTACAACGAAAAGCACCGATTAGCGTTAGAGGAGCTTATTTCAGGTGGAGTTGATTCCTTTCTGGATTTTCTAAGAAAAGAACAAATTCCGAACTTTCTCTCAGATGACGAGATCAAACAGATTGGCCGTGCTGCGGCGGTCCCACGCTTTGCGTCCCTCCAGGGTGAAGACGTGATCATTGAGCAGTCGGTAAGTAGCTCCATGGACTGCTCCTCGGTGACTTACTTTCCAGAGGTCTCAGACGTGGAGCCACCGCTGTTGGAAATCGGCTGGCCCGCCTTTACATCGGGCTCTTACCGAGGAGTCACTCGTGCTGTCGCACACTTCCAACCCAGCTATGGGGAATGCATCTATAGTTGTAAGGAAGCTGCGAGAAGAATGATAAAAAGTGCCAAGGAGGTGATTGCCATAGTGACAGACTCTCTGACAGACCTGGACATATTCAAGGATCTTCAGGAGGCGTGCACGCAGCACAGAGTTCCAGTGTACATCCTGCTGGAACACTCCTGTGTGCCCGCATTCCTCAAAATGTGCAACAACATCAATGTGCGCCTGGACGAGCTTCTGCAAATGCGAGTGAGGACCATAACTGGTGGTACGTACTTCATGAGATCAGGGGCCAAGATTACTGGAAAGGTTCATGAACGGTTCATGTTGATTGATGGGAACCGAGTGGCTACAGGCTCCTACAGGTTCAATTGGACTGATGGTAAACTTAACAGCAGCAACCTGATTGAGTTGTCTGGCCAGATCACTGAGAACTTTGATGAGGAGTTCCGCATCCTGTATGCCCAGTCCATGCCTGTTATTACCAGGGGCCCAGCCAGTGCCCGAATCAGTGGCATCTACGACCACCTGCTCATCAAACTCCCCATCACGTCATCCCCTCAGCCGGCCAGAGAAAGGCCCCCAGTCGAGTCTGTCGGTCTGGCAGTATTGGGCAAAATTGTCTGTCTGACCAGCACACCCAGCCGGGCCCAGGCTGTGGCAGTGCTGCCCCCCAGAGAGGACACTGGGGAGAGGGGCTGTAAGAGCAGCCCGGTCTCAGACTCCTCCACTATAGGGGAAGACTGGATGGAGCAGCAGCACATGCAGGAGATCCTGTCTGGAAGTGCTGCCCAGTGCCTGCCTACAGGTGACCCTGCCACTGTTACAGCAGCAGTGGATGTGCTGGTCACACCCCTCGTCACTCCTTGTCATGTCTCCACCCAGACCAGCTTCACCACGGTGGACAGTGGAGTGCAGACAGATCTGACTCAGTACACTAACCGCCTCTCCCCCAACAAGACTACAGTTACCCAGTTTGCCACCACCAATAACCAGACCGACAACATCCAGAATGAAGCTGCCTCCTCAGATTCCATCTCTACCTCCCCTAGGCAGCACCTCGCCCCCCATGGGGTGGACCGTCGCCCTGCAATCCGTCACTGTACCTCGCCCCCCGATGGGAACCTGAGGGAGTGCTTCCACAAGCTGACCAAAGAGCGTCAGTATCACTACTCCAACATCCGCTCCAAGCTGGAGCACATGGGGACCATGCTGTCCCACCGCCGTGAGCTGGTAGACCTCACCAACATGGCCTTGGGGCCCGGGCTGCATAGAGCATGCAAGTCCCAGAAAGAGTGGGAACAGAGGCAGGGGCATAACCCTGGCCTGCTGATGGACAGTGTGGGCATGGACACTTGGCCAAGGGCCAGATGTTTACAATAAAATAACTTATTGAGCTGCAGGGCCTTAGAGATGATGGGTGTTGTGGAAAGGgttctgtgttttgtgggtataCACTACCTGAAACAAATGGGTTTAAAGGGCAATATGAAATATTTGAGGATTATTCTTCCTTAGttttaagattttgaaagtacactacatggccagaaggatgtggacaccccttcaaattggtggattcggctatttcagccacacccgttgctgacaggttaatgaaatctagcacacagccaagcaacctccatagacaaacattggcagtagaatggcccatccTGAAGAGATCAGTGACTTTCACCACCttcgccacctttccaacaagtaatttcattacatttctgccctgctatagctgctccagtcaactgtaagtgctgttattgtgaagtggaaacgtctagaaacaacaacggctcagctgcgaagtggtaggccacacaagctcacagaacgggaccgtagAGTGCTGAAGCCCGTAGCATGTAAAAATATTTTGcgacactcactaccaagttccaaactgcctctggaagcaacgccagcacaagaactgttcattggaagctccatgaaatgggtttccatggccgagcagtcacacacaagatcaccatgcgcaattccAAGCATTGTCTGGAGTGGTGCAAAGCtcacaaatctgggtttggagtaCACTGCCTGCATgagtgcatagtgccaactgtaaagtttggtggataagGAATAATGGtccggggctgtttttcatggtttgtgctaggccccttagttccagtgaagggaaatcttacactacagcatacaatgacattctagatgattctgtgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaatgctcccatgCACAAGGggtggtccatacagaaatggtttgataAGATCCGTGTGgacgaacttgactggcctgcacagagtcctgacctcaaccccattgagcacctttgtgatgaattggaatgccgactgcgagccaggcctagctgcccaacgtcagtgcccgacctcactaatgctcttgtggctggatggaagcaagtccccgcagtaatgttccaacatctaatgaaaagccttcccagaagagtggaggctgttatagcagtaaagggggaccaacaccatattgatgcccatgattttggaatgagagagtctacgagcatgtgtccacatacttttggctatGTAGTGTATGTGTTATTGTGATGCAGCCTTCTTCCTCTTGTTATTGTCAATCTGTCCCCTTTCTTTCAACCCTGTTTGAACATGACTACTAGAAATTGACGTGAAATGGCAAGAGATCGGCCACAGATAGACTGTCATTTGCCTTGACCATTTTTGCCACGAAATGGTACGTTTTTAAGCAAGGACATTGTGCAATAAGCCACAATCTGAATAgtttttatgaaaatattttaTTGAACCAAGATTGTCCAATGATTTATTTGAGAAACACTAAGTACAATTCATAAATTGATATTTTATGACCATTTTAAGTGAGCCATTTTGTCTGCTGTAACTAAACTTAATTATGCTGGATTCTAACATGCAGTCTAACTTAACCTGAGTACTGAGAAAGTATAGGTTTTATGATATCGATTGATGTACTTCATTGCTGACACAATGGAAATAAAGGAGTACTTGATTTATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701146 lncRNA downstream 65324 47540909 ~ 47541186 (-) True G616112
TU701090 lncRNA downstream 110444 47425852 ~ 47496066 (-) True G616058
TU700205 lncRNA downstream 375356 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 377043 47229181 ~ 47229467 (-) True G615254
TU700200 lncRNA downstream 379783 47225799 ~ 47226727 (-) True G615251
TU701196 lncRNA upstream 34945 47647543 ~ 47749086 (-) True G616162
TU701394 lncRNA upstream 396198 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 434318 48046916 ~ 48047153 (-) True G616358
TU701430 lncRNA upstream 440339 48052937 ~ 48053207 (-) True G616364
TU701438 lncRNA upstream 445829 48058427 ~ 48058632 (-) True G616370
XM_021609507.2 mRNA downstream 42555 47559568 ~ 47563955 (-) False si:dkeyp-97e7.9
XM_021609508.2 mRNA downstream 42555 47559568 ~ 47563955 (-) False si:dkeyp-97e7.9
XM_021609509.2 mRNA downstream 42555 47559568 ~ 47563955 (-) True si:dkeyp-97e7.9
XM_021609503.2 mRNA downstream 50692 47548957 ~ 47555818 (-) True LOC110527902
XM_036983383.1 mRNA downstream 57902 47544593 ~ 47548608 (-) True LOC110527901
XM_021609512.2 mRNA upstream 28631 47641229 ~ 47661989 (-) True LOC110527908
XM_021609513.2 mRNA upstream 74234 47686832 ~ 47696673 (-) False LOC110527909
XM_021609515.2 mRNA upstream 74733 47687331 ~ 47696673 (-) True LOC110527909
XM_021609518.2 mRNA upstream 162187 47774785 ~ 47788931 (-) True trpc4apa
XM_021609519.2 mRNA upstream 177666 47790264 ~ 47794020 (-) True LOC110527913
TU700211 other downstream 336439 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 1730810 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3120758 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3121105 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4026546 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 874449 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1571826 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1571826 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1583006 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1682657 49295255 ~ 49297248 (-) True mustn1b

Expression Profile