RNA id: XM_021609516.2


Basic Information

Item Value
RNA id XM_021609516.2
length 2401
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110527910
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47711530 ~ 47715289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAATACTATTGCGTGATGTGTGTTATCTGCAGGTCAATGCGATCAAGGCCGGGTGAACGCTTTGGGGGACATGTTTTTGTTTAGGAATGGGTAAGCGAGTGGTCTCATCCTGCGCTCATGCGGAGGTGGGGTGTGCCCTCAGGGCGTCATAGTATTTCAGCAGAGGACAGAGCAGCATTTTGGAGACAGTCCGTTATTTAGACAGTCACACAGTGGTCCACAGTTGAGCAGGTTGAGACAAACGGGTAGACTATAAGTTTCAACGATATATTATTCTTTATATACCGCTTTTCTCATGTGGGTCTAAGTCGTAGACGTCTGTCTATTTCCAAAGTTTGAACCCGTGACTGGTGGATATTTTACGAACATATTTCGCAAAGTGGAAAAATGCCTCGGTCTTTCTTGGTCAAAAAGTATTTCGCGAATAAAAAACCCAACTATAGTGAACTGGAGTGTCAAAATGCCACCTCACTGGAGAGGTACCCACTAGCTGAGCTTCCAGCAGGGGACAATAACTTAGCTGCCACCTGTTACACAACAGGACTGGTATGGGACGTGAGCTTCCTTCCAGCCCTCTACGTCCCCACATCCCCCACTGATGCCCCTCCCACCCCCGGTCCCCTGGACCTCAGCTCCCCATCCAGTCTCAGCAGCAGTGCCAGTAGCagtggggaggaggatgaggggcgCACCTCTGACCCACCCAGCCCCGAGCCCACAGACACCTACCACCCCCCCCAGCGCCCCAAACGCACAGGCATCAAGAGCCATGGGGCCCTGGCCGAGGACGAGAGAGTGGCCCCAGTCACTGCAGCAAGGCCAGCCTTCTTCTGCAAGCACTGCCCTAAAGAGTACACCAGCCTGGGGGCGCTGAAGATGCATATCCGCTCGCACACACTACCCTGTGTCTGCCCCACCTGCGGGAAAGCCTTCTCCAGGCCCTGGCTGCTGCGCGGCCACATtcgcacacacacagGTGAGCGGCCGTTCTCCTGCCAACACTGTAACCGTGCCTTCGCCGACCGCTCCAACCTGCGGGCGCACCTGCAGACCCACGCTGAGGTGAAGAAGTACCAGTGTGGTGTGTGTTCCCGTACCTTCAGCCGCATGTCCCTCCTCCAGAAACACAGCGCTGTCAGCTGCTCCACCTCTTCCACAGCATGAGCAGGATTGGGCCATGGAGTTTTCCCCACAGAGACCTCAGGGCGGTAGGGGAGTCTACAGACTCATATCACCAGCAAGACCAGAGGAGCCTGAACCAATCTGCCAACAGAGACCATGAACTCACCGTTAACTGGTAGGAGAGGAAGTTGACCCTGACTCGTATCTCTTTGGATGGAACTTCCACAGCCATCTCAGTTTCAATCTCATTTAAAGAAGAATAAGAACATTTTTCAAACTCCTCCCATTTCAAGTCTGGTAGATGTATTGGACTGTAAGTAACTCTGTACTCCTGCCATTCTCCCAGTCCCAACTTAGTTTTTTCCTCATATACAGTAGTGGATTCATGAGGGTTAGTGGTGCCATTGTTTTTGTCTATGGCCAGACAAGTTCAGGATCATCGTGGCCTAGACACAGCTGCTGAGAGAGGTAGGGGTGCGTATGTGAGATACATCTCtcagcatgacacacacacacacacacacacacagctgtccctGGTAGAGTGGTGTAGATAGACAAGGTGCTAACAGGTGCTCTGGCCCTGACCTTCACTGGGCTGATAACAGGTGACTTCCACCTCCCCCAGAAAGAGGAAGTATGTCATCATCACAAAGAGGATGGGGTCCGTTGGTCCCTTTGTATGCATGTCTCTAGTGGGTGCGTCTTAAGCTTTTACTTTGACTACATCAAGCCCAGATGTATTCTGATGTGTTTCAAAGACAGGATAAAGCCATTTGTTTCTGTTGTTATTCCTTATGGAAGCTCTCAGCTTTCAATGTCGTTTTAATTCCTGAATGATAATCTAAGCCATGCACTCCAGGTTACCACAGTGTTAATTATTGCCGTTGTTCTCTACAAtgatagagagaacagtctttccCATGCCATTTTTGTAAGATATAAACTTGTTTTGTGAAATTTATTCTTTCTAAACCAAAGATGTGCCTTCTTGCCTCAGCTGGTAGTTTTACCATTATGCATCAAACAGTCAGAACTGTGGGGAAGGAGGGGACCAAATGCCTTGTCTAAAATGTTTACGTCATAGAGGCACGGTTTCACAGCCCTGGCTGTAAAGAGGTGAATTTTACATTTCCTAAACCTTTTATGGTTTGCAGTGCGGTGTCCAGATTGTATGTAGTCTTATTTTttactgtgtttgtgtttttcactTCAATTTCAATTATTTCATAGCTGATGGATTTGCATTCAATAAAATAATTTATGTTTCTAAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700288 lncRNA upstream 69004 47641241 ~ 47642526 (+) True G615338
TU700419 lncRNA upstream 134490 47574138 ~ 47577040 (+) True G615453
TU700291 lncRNA upstream 166626 47544600 ~ 47544904 (+) True G615340
TU700408 lncRNA upstream 169043 47542232 ~ 47542487 (+) True G615444
TU700403 lncRNA upstream 173325 47537863 ~ 47538205 (+) True G615439
TU700570 lncRNA downstream 48026 47763315 ~ 47764018 (+) True G615580
TU700659 lncRNA downstream 166333 47881622 ~ 47883457 (+) True G615652
TU700761 lncRNA downstream 294581 48009870 ~ 48010082 (+) True G615748
TU700785 lncRNA downstream 330339 48045628 ~ 48045973 (+) True G615770
TU700786 lncRNA downstream 330752 48046041 ~ 48046339 (+) True G615771
XM_021609504.2 mRNA upstream 71682 47621471 ~ 47639848 (+) True si:ch211-232b12.5
XM_021609510.2 mRNA upstream 145371 47564064 ~ 47566159 (+) True LOC110527907
XM_021609501.2 mRNA upstream 176242 47529385 ~ 47535288 (+) True LOC110527900
XM_036983381.1 mRNA upstream 186952 47511002 ~ 47524578 (+) False LOC110527899
LOC110527911 mRNA downstream 39978 47755267 ~ 47774218 (+) True LOC110527911
XR_005052708.1 mRNA downstream 306200 48021489 ~ 48022175 (+) False LOC118965382
XR_005052709.1 mRNA downstream 306200 48021489 ~ 48022175 (+) True LOC118965382
XM_021609534.2 mRNA downstream 351634 48066923 ~ 48068196 (+) True LOC110527919
XM_036983394.1 mRNA downstream 412671 48127960 ~ 48168204 (+) False LOC110527921
TU699203 other upstream 1073576 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 1432197 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 3683302 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 3704623 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 3879650 43829004 ~ 43831880 (+) False G610622
TU700614 other downstream 124099 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 1111538 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 1857031 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 1871581 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 2588141 50303430 ~ 50304232 (+) True G618712

Expression Profile