RNA id: XM_021609518.2


Basic Information

Item Value
RNA id XM_021609518.2
length 5019
RNA type mRNA
GC content 0.47
exon number 17
gene id trpc4apa
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47774785 ~ 47788931 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAATCCACAGAACTTCCTGCTTAGAACTGTTCAGGAAAAAGAAATAATGGCGACGTTTCTGGGGTCTGAGTCCCCTTGGACTGGAGGAAAACGAAGCAGTCGCAATATCATTGCAAAAATCACACACAGTCAGATCGCAGGCCAGGGTTTCAGCAGAGGGACACAGCTCCCAGAGGCTCTGCTCcaggagagagataagagggcCAAATGGCACGGCATCCCTGAGCTGCTGCAGAAGCTCCATGAGAGCAGCCATCCTAACAGTgacctctcccacacacacagtgtactAAAGGAACTATCATCCCTACTTTCCATGGAGGCAATGTCTTTTGTCACAGAAGACAGGAAGAGTGCTCAAGAATCCACCTTTCCCAACACATACACCTTTGACCTCTTTGGTGGAGTTGAtCTGCTGGTAGAGATCTTGATGAGGCCTACACTCACTATGCAGAAGAAGAAACCTCAAATGAATGATGACTTAGTCAAGGACTGCCTCAGTGTTCTTTATAACTGCTGTATATGTACGGAAGGGGTTACAAAGAGCCTTGCAGCCAGAGACGACTTTGTCCTGTTTCTCTTCACCTTGATGACGAACAAGAAGACGTTTCTACAGACTGCCACTTTAATCGAGGATATTCTCGGCGTCAAGAAGGACATGATCCAGTTGGAGGGGATTCCTAACCTGTCTGGTCTGGTCCAGAGCTTCGACCAGCAGCAGCTGGCTAACTTCTGCCGCATCCTCTCTGTCACCATCTCAGAACCCGACGTGAGAAATGATGACAAACACACCCTGCTGGCCAAGAATGCACAGCAGAAACGCAACGCAAGCCCCTCACGTGCAGAGGTCAATCAAGTTACCCTCCTGAACATCCCGGGCTTCATCGAGCGCCTGTGTAAGCTGGCCACCAGGAAGGTGTCTGAGGCCACCGGGGCGTCGAACTTTCTGCAGGAGCTGGAGGACTGGTACACGTGGCTGGACAACGCCTTGGTGCTGGACGCCCTCATGCAGATGGCCACGGAGGAGGCTGAGCACAGCAGCACAGAGTCATCAGATGAGAGTTCGATGGCCACCAGCCCTCTGAGGCACCGTCTGCCCCAGTCCATGAAGATCGTCCATGAGATCATGTACAAGGTGGAGGTGCTCTACGTGCTCTGTGTGCTGCTAATGGGCCGCCAGAGGAACCAGGTACACAAGATGTTAGCAGAGTTCCGTCTGATCCCAGGTCTCAACAACCTGTTTGACAAGCTGATCTGGAGGAAGTACACCTCGTCCGATCACGTGGTGCATGGCCAGAACGAGAACTGTGACTGCAGTCCTGAAATATCCTTCAAGATCCAGTTTCTGAGGCTTCTCCAGAGCTTCAGTGACCACCACGAGAACAAGTACCTTCTTCTGAACAGTCAGGAGCTGAACGAGCTGAGTGCCATTTCTCTGAAGGCCAACATACCGGAGGTGGAGGCCTTAGTCAATACAGACAGGAGTCTAGTGTGCGATGGGAAGAAGGGTCTCCTCACACGTCTGCTCGCCGTCATGAAGAGGGAGCCTCCAGACTCCTCCTTTAGGTTCTGGCAGGCCAGGGCAGTGGAGAGTTTCCTCCGTGGAGCCACCTCCTATGCGGACCAGATGTTTCTGCTGAAGAGGGGGCTGCTAGAACACATCCTGTTCTGCATCATAGACAGTGGCTGTAAGTCCAGAGATGTCCTGCAGAGCTACTTTGACCTGCTGGGGGAACTCATGAAGTTCAACATCGACGCCTTCAAGAGGTTCAACAAATATGTCAGCACAGACGACAAGTTCCAGACCTTCATGACCCAGATCAACAGTTCCCTGGTGGACTCCAACATGCTGGTGCGCTGCATCGTCCTGTCCCTCGACCGCTTCGAGAGCCAGACAGAGGATGTGAAAGTGGTGGAGGTGCTGTCTGAATGCTGTCTGCTGTCCTACATGGCCCGGGTGGAGAACAGGCTGTCCTTCCTCTTCAGGCTGGTCAATGTCATCAACGTGCAGACTCTCACACAGGAGAATGTGAGCTGTCTGAACACCAGCCTGGTGGTCCTGATGCTGGCCAGGAGGCGGGGTAAACTTCCCTTCTACCTCAATACATTGAGAGAGAAGGAGTATGCAGAGAAATACCCTGGCTGCCTGCTAAACAACTTCCACAACCTACTGCGCTTCTGGCAGCGCCACTACCTCAACAAGGACAAGGACAGCACCTGTCTGGAGAACagcTCCTGCATCCCCTTTGACTACTGGAAGGAGACAGTGTCAGTGCTGCTGGTCTCAGACAGGACTTCTCTGTGTGCCATAGCCAGCTACATAGATGAGCCCTTCATGGACCTGGACAGGGACCTGCTGGAGGATTAACCCATACAGGCGGGTTTGGGTGTGGCTGGCCTGGTGGAGGGGGTAGGGGGTTGCTGGGGTATGGACACCTATCATGAGTGATGACCATGCCAGAAAGCTAGAGCAGGACTGTAACTGTGGCTGGACACAGCCTCGTTGCTATGCTGTCTGTAACTAGGCCAGGAGGCTGTtactgaagggggggggggggggggggggtgattctACAATCCTGGCCATCTTCACTCCTCGCTCCATTCTCTTCAGAGGAGAAGGGGCGAGACTGCACCTGTTTGTCTGTCCATTACCAGACCCTACAGTAGAGAGATACATTTCTTGGACCTTGAAATACTCCTATGTTGGTGGTTTGCTTTAGGTGAAATCAAATAGCCTTTTATATATTACATAAATATATTGAAAAATCTATACATACGATGCAACAAATTAGATAGGatgtatctatctatccatctaacACAGAAAATGGTTTGTTTTCACTGTGGGGGACTTGTTATAAGAGGGGAGGCCCAGAGTATGTCTGAAGACTAGTCCCCCCTGTGTCTCTTCTAGCCCACATGGCTCTCTTAGAGAAAGGAAGTGTTGACTCCATGTCTGGGAGCCTAAGAGGGCTGCTCATGACTGGATGCAGAGGTGGCATCAGTCTTGTCCAGTGGTCTTTTGAATGAATGGCTTCGTCTCTGATCTATATGTGTATGTAGGGCTCTCTCTCTTAGGTGAATCTAGTCGACTGGTACTTGTAGCTTTACTCAGCCCGTCCAGGTAGCTTGTGGATCTGTTAATGGTTGACATTCTATGGGGTCCTATGGTGGATGAGATGGGGCTGGACGGGACCCCCACTCACCTGAAGTCACCAACCCCTTCATGACTTTACCCCAACACAAGGAAACATTTTCCTTTCTGTTTTTCAgacattgtttttgtttttcatctTGTTAAGAGAATAGCTTTTAGTTCTAAATAAAGTGTAGATAAAAGGAAGAAAACATTGCACTGTTtgaattgttgttttgtttattttgatGACCGATGTTTTCATTTTGTATCAGACTTTGTATGCATCAAGTGAAAGGGGGGTTTGGCAAAATAATTAACTATGCAGGTTCTAGTATTCAATCCCACTCTCTGTCGCCGACAGTTCTCACAACAGTTCCTTAACCCCTTATCCTTCAACCAACAGCCACGCTGTGCTGCGTCACTTGATTGTTCTCTAGTCGTCCACTTAACTCTTGACTGCTCTTATCTTACCATGAGCCTAGACTTCGACAATCTTGATCTGTCTTTGTGCTGATTCTGTGCTTGATGTCACCTCTAATGTGATTGGCTGAAGGGGGGAATGGGCGTGGTTACATTGCTATGGCTCCTCTGGCTAGAATGTGCTGATGTTGCTGATGCAGAGTTAGCATTTAGCAAAAAAACGAATCCAAGAAATTGACCAATGATTGAGCTACCTCATTTTTCAACCCAGCAAGCACCAATTGGATCACTCACAGGGTGTATGTCAAAATGAAACTAATCCTGTTTaaacagtttttttgttgttgctatcaTACATTCAGTCATGTGAACGTACAATCTGTTCACAATTTGGTTTGCCCTAACAGTTGTTATTGCTACATAACCACAGGCTTTCCTACGATGTGTGTTCTCGCACCATTTGGtttctttacctacctacacTTCACCACTACTTAATGTGGATGACTTGTGTATCATGGAAGGAGCCTGCAATGTTCATAGGAGTCCTACCGGTGCAGCACCATTTAGGTCATTCTGTGTGTCCAGTCTTCTTCTAGTGTTTGGAACAGAACTGTTGCCATGAGAACTCTGTGCATGTTCCACGCTCCCCAAGAGTCATGATTGCCTGTGGAATAGCATATTGTCTGGGTTTTTTTTTGGCATCTGGTGCAGAGTAGATAACCTACTTTTAAAAAATCTGGTCTTAATTGCTAGATATAACTTTGAAAATCAAACACAGTACTGTATTTCTATACTATCCATCATTAACAGCCACCCAGATTTTGTACTGTTGAAacattgtacatactgtatatttggtTTTGTGCAGATTCGCTTCACACTAAGAACTTACACTTCAGAAGCAGCCTATATACATTAAAtccaatacaaaaaaaaaaatgaaagtcTGACTTGACATTTTTAGTTGATAATTGGTGCTTAATTATTTGAATTTGATTGTAATTCCTAGTCTCTTACCCTTCTTACATCAGGTACATTATTTGATGGAATTGTTACTCTGTTCTTTGGCATATATGCCAAGTTAGTTTCCTTTGTTTGACTGTGTGTGGTATAACCCAGTCACTGTTATCATTGGAGATGAATAATAAAAAGCACATGGTGCGTGTATACCTAGAGAAATTAGATCAGCAAACCTTTATTATGTTTTCTGAAACATGATCAAATCATTTTTGTATGTTTTATATTTTGCTTTGACATTGGATATTGGGGTGGTGATGTTTTAGTGTAcattggacccccccccccacacaccactCCTAATCCTGACTCAATCCACCACAATCCCCCTAAAATTCAATTTCACACCTGTTTTCTTAATCTTATGTTTAATTTAACAGTCTTGTTTGTGAATTTAATACAATGATAATCCTAAATAAATTCTCAACTTTCTTT

Function

GO: NA

KEGG:

id description
K11796 TRPC4AP; Trpc4-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701196 lncRNA downstream 25699 47647543 ~ 47749086 (-) True G616162
TU701146 lncRNA downstream 233599 47540909 ~ 47541186 (-) True G616112
TU701090 lncRNA downstream 278719 47425852 ~ 47496066 (-) True G616058
TU700205 lncRNA downstream 543631 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 545318 47229181 ~ 47229467 (-) True G615254
TU701394 lncRNA upstream 219865 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 257985 48046916 ~ 48047153 (-) True G616358
TU701430 lncRNA upstream 264006 48052937 ~ 48053207 (-) True G616364
TU701438 lncRNA upstream 269496 48058427 ~ 48058632 (-) True G616370
TU701472 lncRNA upstream 342170 48131101 ~ 48131464 (-) True G616402
XM_021609513.2 mRNA downstream 78112 47686832 ~ 47696673 (-) False LOC110527909
XM_021609515.2 mRNA downstream 78112 47687331 ~ 47696673 (-) True LOC110527909
XM_021609512.2 mRNA downstream 112796 47641229 ~ 47661989 (-) True LOC110527908
XM_021609506.2 mRNA downstream 162171 47606510 ~ 47612614 (-) True LOC110527904
XM_021609505.2 mRNA downstream 162187 47606510 ~ 47612598 (-) False LOC110527904
XM_021609519.2 mRNA upstream 1333 47790264 ~ 47794020 (-) True LOC110527913
XM_021609521.2 mRNA upstream 6146 47795077 ~ 47809882 (-) False LOC110527914
XM_021609520.2 mRNA upstream 6146 47795077 ~ 47862504 (-) False LOC110527914
XM_021609522.2 mRNA upstream 6146 47795077 ~ 47862504 (-) False LOC110527914
XM_036983384.1 mRNA upstream 7388 47796319 ~ 47862506 (-) False LOC110527914
TU700211 other downstream 504714 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 1899085 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3289033 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3289380 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4194821 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 698116 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1395493 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1395493 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1406673 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1506324 49295255 ~ 49297248 (-) True mustn1b

Expression Profile