RNA id: XM_021609522.2


Basic Information

Item Value
RNA id XM_021609522.2
length 2500
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110527914
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47795077 ~ 47862506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAACGCAATGTGTAGTTCCGCCCTGAGAGTGACATCGAAATACTCGTTGGAATAGGAACGCAACCAGGCAAAGAACAAGAACGTGCAGTTTATAACACCGGTATTTCACCAAAAGTCCAGAGGATTTGACGCATATCGAACGGATACGTATTCAATCCAAGCGTGACAAGACAGAAGGATGGATGAGCTACAGGACGTGCAGTTGACTGAGATCAAGCCCCTGCTGACCAATAAGAACTTCCGTAACTTCCAGGACTTTGACTGCCAGGAGCATGATATTGAGACTCAGCATGGCGTGCTCCATGTGACCATGAGGGGCGTTCCCAAGGGCAACCGGCCAGTAATCCTCACCTACCATGACATCGGCCTCAATCATAAGTCATGCTTCAACACGCTGTTTAACTTTGAGGACATGCTGGAGATCACGCAGCACTTTGCTGTGGTCCACGTGGATGCCCCCGGACAGCAGGAGGCGGCAGCACCCTTCCCCACCGGGTACCAGTACCCGACCATGGACGAACTGTCTGAGATGCTGCCCTCGGTTATGACTCAGCTCAAGGTGAACAGTGTGATTGGGATTGGCGTGGGAGCAGGAGCCTACATCCTATCCCGGTTTGCACTGAACAACCCTGCTCTGGTAGAGGGCCTGGTTCTGATCAACGTGGATCCGTGTGCCGAGGGATGGATCGACTGGGCTGCCTCCAAGcTCTCTGGATGGACCAGTAACATCGTGGACACAGTGATGGCTCACCACTTCAGCACTGATGAGCTAACAGACAACCAAGAGCTGATCCAGACCTACCGCCTTCACATCGCCCAGGACATCAATCAGGACAACCTGGCCCTCTTCTGTGCCTCCTACAACGGTCGTCGGGATCTGGAAATCGAGAGGCCAGTCATTGgtctgaatgaggagacagtGAACACACTGACGTGCCCTTCTCTGTTGGTGGTTGGAGACACATCTCCTGCAGTGGAGGCAGTGGTGGAGTGCAATTCCAGGTTAAATCCAACGAAGACTACACTGTTTAAGatggcTGATTGTGGAGGCTTGCCTCAGGTTGTGCAGCCTGGGAAACTGGCAGAGGCCTTCAAGTACTTTGTTCAGGGTATGGGTTATATGCCCACGGCTGGAATGAGTCGTCTGGTCCGATCCcgcaccacctcctcctccagcaTCACCTCCATGGACAGCATCCGCAGTCGCAACCTCAATAGCCTGCTGGAGAGAGCCAACACCACTGGGGGCCTGGACAACCAGCCTGGGCCCCAGACCATGGAGGTCTCCTGCTAAATcgtcccatctctccctcactccacaTAGGGTAGCCGCCCTCACCGGTGGCCCTCTCTTCCTCCAGTAACTTAtatctcccagtctctcctaccCTGCTCCGAAGCTACTCAATGCCAGGGTGTTCAGTGATGAATTGTGTGATAAATATGAGAATATATACAAATGAAGATTAAATATAATACTGTATACATGTCAAACTTCGAGCCACAAGCTGAGGGGACAAAATAAAGGATGAatcagatatactgtatactccaAGGGTCTAGATGGTACGATCCCCCACCCAACTGTTTCTCATAATTTCATTGGTATGCATGTGTCTTGTGCAAGTGAATCTGGAGACTTGTTCTCCTGGTTTCAATTACTGTATGTCCCTCCTTTGTTCCGGTTGTTGCCTTTCACATCTGTTATTTATTccccatgtgtctgtgtgtataggaTCGGTTCCTCAGCACAGGAGGGGTTGAAGAGTCCCATCTCTCACATCCGCTGTAGTCCAAACACACattcctcttccttctcttatACTATGATCTAGAACACATTTACACTTAAAACCTTCATTCATTGCACACATTTAGACACATATTTTTTAATGTTGTGAACTGTGAACACACGCCTCCTTTGATTGTGTGGCATAGTGTAGATGTGTGTtttcctgtactgtaccttgctgcactgctctgctctgccgaGTCACTCCATTCACACTGTAGATTGATCACTCATGCTGGGTGCAAACACAAGATTCATGACTTCCTGTACATTTCTCTGCATTGTGTTGTTTTCCATATGGCAGGTTATACTGGCCCAAATGACAGAATGAATGCACTGTGTTTTGGTTGTTCTAGAACATTATACTTGCTTTTTAGGAATATGCAAAAATGTAAAGAAATTCAATGGGAAAGAACCGTGGGCCAATGTGATTGTCTAGATTCAATCACTTCTCCTTTCATCTGTGtgttaaaaatgtttattttgtaaTTGATGTCGTCTTTTtatgttttacatttttgtttttatagTCCGTTCACTCATCGCTTGAGTAGACATACACAATGAATAACAACTTAACAAGCCTGTTATAATGTGGAAATGTGTTCAGTCTTCACTGCAGGGCCCAGTGGTGCTTATCACGGTCTGCCAATACAACTCATTTATACTACTAAACTACTAAATAAAGCTAGAAGATGTAAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701196 lncRNA downstream 45991 47647543 ~ 47749086 (-) True G616162
TU701146 lncRNA downstream 253891 47540909 ~ 47541186 (-) True G616112
TU701090 lncRNA downstream 299011 47425852 ~ 47496066 (-) True G616058
TU700205 lncRNA downstream 563923 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 565610 47229181 ~ 47229467 (-) True G615254
TU701394 lncRNA upstream 146292 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 184412 48046916 ~ 48047153 (-) True G616358
TU701430 lncRNA upstream 190433 48052937 ~ 48053207 (-) True G616364
TU701438 lncRNA upstream 195923 48058427 ~ 48058632 (-) True G616370
TU701472 lncRNA upstream 268597 48131101 ~ 48131464 (-) True G616402
XM_021609519.2 mRNA downstream 1057 47790264 ~ 47794020 (-) True LOC110527913
XM_021609518.2 mRNA downstream 6146 47774785 ~ 47788931 (-) True trpc4apa
XM_021609513.2 mRNA downstream 98404 47686832 ~ 47696673 (-) False LOC110527909
XM_021609515.2 mRNA downstream 98404 47687331 ~ 47696673 (-) True LOC110527909
XM_021609512.2 mRNA downstream 133088 47641229 ~ 47661989 (-) True LOC110527908
XM_021609530.2 mRNA upstream 1493 47863997 ~ 47880903 (-) False LOC110527915
XM_036983385.1 mRNA upstream 1493 47863997 ~ 47880905 (-) False LOC110527915
XM_036983386.1 mRNA upstream 1493 47863997 ~ 47880905 (-) False LOC110527915
XM_021609525.2 mRNA upstream 1493 47863997 ~ 47881019 (-) False LOC110527915
XM_021609527.2 mRNA upstream 1493 47863997 ~ 47881035 (-) False LOC110527915
TU700211 other downstream 525006 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 1919377 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3309325 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3309672 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4215113 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 624543 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1321920 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1321920 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1333100 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1432751 49295255 ~ 49297248 (-) True mustn1b

Expression Profile