RNA id: XM_021609526.2


Basic Information

Item Value
RNA id XM_021609526.2
length 4966
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110527915
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47863997 ~ 47881064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAACAGAAGGTATATTTAATACATGCGTAGTTGCGCGCCGGTAGTGCGAGTGCAtcgagagaaaaaaaatcaactGCGTGCTCTCGAATCAGAAGCACCACACGCTGCACATCACCATTGGAAACACAGTATCCAGAAATCAAGAAAACACGTGGGTTGCCAAGTAGTGTGAAGATATCCGGCTACTATTGTTGCATTTAAATGGAATATGCTCAAAGTCTCTACACAAAGGAGGTGGATGTGGGCATGATGAGCAAGACACCCCCTAACAGAAGAGGGATAACCTTTGAGGTGGGAGCAACACTAGAGGCCAGAGACACCCTCAAAAACTGGTATCCGGCCAACATAGAGAAGATTGACTATAGTGATGAGAAAATCCTGATCCACTACCGTCAGTGGAGCCACCGCTATGATGAGTGGTTTGACTGGACTAGCCCCTACCTGAGACCTGTAGAGAGAATCCAGCTGAGACGACAGGGACTGCTGGACGACGATCCTATCCCTGGATTTCATGTGAATGACAAGGTCCTCGCCAGTTGGTCCGATTGCCGCTTCTACCCTGCCAAGGTCTTAGCAGTCAATAAAGATGCATCTTACACCGTGAAGTTTTATGATGGAGTCGTCCAGACAGTGAAGGGGATCCACGTGAAGCCTTTTGTCAGAGAGagaggaggagggaagactCGGTCTGCTGAGAGGAATGGAGTCAGGAAGCACCAGAATGGCAGAGAACGGAGGCCTCAGGAAAACATCCCCAAGAATAAAAGGGCCAGACGCAGTACCTCTGAcctggagggagacagtgagaccGAGGATAATAATGAGGTTGATGAATGGGACaagagggagggacaggagaAGACCAAGAGGAAGGACGGTGAGGTGGACGTCACCAAAGAGAGTCCACCCGCGATTAAGCAGGAGGAACATACAGAGCAGCATGCAGGACTGAACGACCTCCGGGATCACATGACAGCCACTGTGGGCCCAAATGGAGTGAAGGTGGAAGAAGACCGAGGACAGAAGGTGGAAGAAGACCGAGGACAGAAGGTGGAAGAAGACCGAGGACAGAAGGTGGAAGAAGACCGAGGACAGAAGGTGGAAGGAGACCGAGGACAGAGTGAGGAGAGGTCTACTCATAATTTAAATGGAGGTATAAAAAAAGAGGTGGAAATTAAAACTGAGTACACAGTCCTGAGCTCACCAAATGAACCTAAGCCATCCACTGAGTCACCCAATCAGATGTCAACACTGACAGGGCCAGTGTCTATCCCATTACCCTCAGCTTTGTCCACCAATGACGGAGTGGAGCAGAAGGCAGCGAGCCAACCGGAGAGCTCAAAATCTGCACCACTGGACCTCCCAGTGAAACCAATAAGGAAGCAGGGTTTTCACAACCCCAACAGATTCagcagagagccatTGTACAGAGTGATCAAAAACCAGCCTCCCCCAGTCCTGTCCATCAACTTGGACCACAACCCGTTTAAATGCAGCGCTGTGGGTTGCACCAAGTCGTTCCGCAAGGCCAAGCTGCTTCACTACCACATGAAGTACTACCACGGAGAGGACCAGCAGCTAGAGGATGACCTCAGCCCCACCAGGAGTGTCCAGACCCAGGCCTCAGAGAAGCACCCCTTCCCTACCACTCTGGAGAGTCCTAAGAGGAGACGCACCATCTCTGCCTCAATGCACTCCACTGTGCACAGTCCTATCAGAACTCCCCCGTCTCCACGTAGTGAGGCAAAGACAATGAGCAGACGCAGGTCAGTGCCACCTGCTGTCAGCACAGAGCCAAcacagagccagcagcagagggCGCTGCTGAGGGAGAAGAGCAAAGAGAACCAGCTGGACAGGAATGGCCAGAGACTGGTGGCGACAGAGACGTTTATGAGCAGTGGCATGGACTTAGGATTGGTGAAAGAACGAGACCGGCTGAAGGATAAGAAACAAACAGACTTCCTTCGCGTTAAactgaagaaaaagaagaagaaaaagaaggccAAGTCTGAGTGCACAGGTAGTGAGGAGAATATTGACATCTCAATATTCGATCTTCAGTCCAAATTGAATTTTCCACTCAAATTCCCCCTCTCACACAATCACAAGCCTGAGTTATACCACTGCAGGCCCGGATACAACCAGTCAGAGCAGATACACGTGGATGATGAGGATAGCATCAGTGATTGGTCAACTGACAGCTGTGGGTGGAGTGATGATGAGCAGGGGGCGGAGCTGGACGTCACTACTCCACCCCTGAATCTGGGCTCTGTTGCCTTGGAGACGGGCGCTCAGGAGATTGTGCGTTGCgtctgtgaggtggaagaggaAAACGATTTCATGATACAGTGTGAGGAGTGTCTGTGCTGGCAGCATGGCACCTGCATGGGCCTCCTGGAGGAGAACGTCCCTGACAAATACGCTTGCTACGTCTGCCGAGACCCACCAGGTCAGAGGCAGAGCCTGCGGTACTGGTATGATCGTGATTGGCTGAGCAGGGGTCACATGTACGGTCTGTCCTTCCTGGATGAAAACTACTCCCACCAGAATGCAAAGAAGATTGCAGCAACACACCAGTTACTAGGAGACGTCCACCGTGTGGTGGAGGTGCTCAATGGCCTGCAGCTCAAGATGAGCATCCTACATACCCAAACCCACCCGGACTTGCGGCTGTGGTGCCAGCCCTGGAAGCGGGCAGAGAGGCCCTGGAGGAGAGACGGCTCGGGGACGGGCACTGACGCAGCACCGTCTCCAGCGCCAACAGACGAGGGCTCAGAGAGGGACCACAAGAGTCTTGCGCGTGGGGGAGCAGAAGCTCTGATGTCAGCCGCCATGGAGAAGCTCAGTCGAGCCTCCTCTTCCGCCTTCTCGCCATACCAGTCGTTCCAGGACTCTTACATTATGAGTGAGCACTGCTACCAGAAGCCGCGGGCGTACTACCCTGCGGTGGAGCAGAGGCTGGTTGTGGAGACCACACGGAGGGGCTCTGAGCTGGAGGACAGCCTGAGGAGTACTGAGGACCTCCTGGAGAGAGAGCAGCGCTATGGAGGCATGCTAGAGACAGCCAGGCCCAAAGcccacacacacctgaacacacacaccaagGGTTCAGATGTTGGTCGCTGGGGCCATGCCGAggtgaagatggagggaggggacggAGACGGCAGTAGCCAGCAGCACCAGTGGCAGATCAACCTGCTGGATCACATAGATGCCGTACAGGAAGAGGTCACTCACAGGATGGACTTCATTGAGAGGGAGCTGGATGTGTTGGAGAGTTGGCTGGACTACACAGGGGAGCTGGAGCCCCCAGAGCCTCTGGCCCGCCTGCCTCAGCTTAAACACAGCATGAAGCTGCTGCTAACAGAGCTGGCTAAGGTGCAGCAGATTGCCCTGTGTTGCTCCACATGAGGGAGCCAGTGAGCAGTGTGACATCCATATTCACAGACCAACACAGCACTCCCAAGAGACAATGCAGTGGAGAGCAGCCACTCACAGGTCTATCTATGGCATATGGGGGTTGGACTGAGGAGAAATGACCAGATAATTAAATGCAAATGCACTTTCAGTATACCGCAGACTAGTGGGAGCATTTCATGGCATGGGGTAAAATGCTTGAGGATGACAGTTGGTGTTCCTCTGTAAGGCCTCTAGTCTGTACAGGGAAAAGCCCACATAATGGAAATGTGCTGTATCGTGGTCATTGCAGTAGGTAATGGATGGAGTCAATACAAGAGAGAACAAACGGGGACAGTTTATGATCGGATGGGTTTTGTTGGTGCAAACCTGCATCATATTAATGCCTTGGTCTGAGGTTTTGTTTGAAGCTTGCTGTCATGCACTCCACAAATTGATGAGCTGTACTATGTATTCAAAGACCTCACCTGAACGTCTGATAGACACACTGTCAATATTCATAATGACAGCTTTTGGAAACACTGTCCTTGGAGCCATATTTTGCAACTCTTTTTTCCTGTCTCAATATTGTAAAGTACTTAGTCAATGATAATCTCGCATAATTATTAAGCTTATGTTTGCTGATCATGTGGATTGTTTTACAGAGCACAACCTTAATAAGGTTATAAATAGGGTGTGACAATACAAACTATATTCTTATAATGGCACTGTATAGATAAGATTAATCTTTCAGATTTTACGTAGTGAATTTTTACTTGGTCTGTATTATAGACACTGGAGGGACAGTACACAGTTTGATGACGAGTGAcgtttctggatttttgttttcataTTGTTTAAATGTGGTTTCTTTCCAAAGCTAATGTCACTTGTATTTTGTTGGATTCCGTGCATCTTCTCTTCTATGCTATTCACTCTCGTCTCGCGAGTTCCTGCCCTACTACTTTGCAGATGCATACCAGATCTTAGACCTGCAATAGGTGTAACATTTTAGCTAACCACCTCGTATGATATAGCAATCTGGTGCCCGACTGCAGTCTGACTTGGCACACAGCCATTGGTAGATGCAGTGCAACGCCTGCCCTGCACATCTAGTCGTGCAGGAACTCGACCTTTAACTTTTCTTCACTGTAGCCTTTGACTTTTGGCTTACTGCAAATGTTTGTGGAGATGTCTGCTACAACCTCAGCATTTTGTGTTCTGTTCTCAGTGGAAGACTTGTAACAGATCCACGATTTTCCTTTTCTTGTATTGTTTTATCTGTACTGTTTATTTGCAATATTTTGTATTTCTTGTGTAAATACATCTGAATGTTTCCTGGGATGACTTTGTATTGATGGTTATTTTTAAACATAGCCCTCCAAAGAGCCATACTGTACTAGTGGGTCAACCAGGTGAAGAATCAAACAAGATGGTGAAAAATTGCAACAGATATGCTGGTACATAAATACACTATCTCTCATTGATATATTtggaaagtatacagaccccttgactttttccatattttgttacattatagccttattctaaaattgattt

Function

GO: NA

KEGG:

id description
K18402 PHF20; PHD finger protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701196 lncRNA downstream 114911 47647543 ~ 47749086 (-) True G616162
TU701146 lncRNA downstream 322811 47540909 ~ 47541186 (-) True G616112
TU701090 lncRNA downstream 367931 47425852 ~ 47496066 (-) True G616058
TU700205 lncRNA downstream 632843 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 634530 47229181 ~ 47229467 (-) True G615254
TU701394 lncRNA upstream 127732 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 165852 48046916 ~ 48047153 (-) True G616358
TU701430 lncRNA upstream 171873 48052937 ~ 48053207 (-) True G616364
TU701438 lncRNA upstream 177363 48058427 ~ 48058632 (-) True G616370
TU701472 lncRNA upstream 250037 48131101 ~ 48131464 (-) True G616402
XM_036983384.1 mRNA downstream 1491 47796319 ~ 47862506 (-) False LOC110527914
XM_021609523.2 mRNA downstream 1491 47796382 ~ 47862506 (-) True LOC110527914
XM_021609520.2 mRNA downstream 1493 47795077 ~ 47862504 (-) False LOC110527914
XM_021609522.2 mRNA downstream 1493 47795077 ~ 47862504 (-) False LOC110527914
XM_021609521.2 mRNA downstream 54115 47795077 ~ 47809882 (-) False LOC110527914
XM_036983387.1 mRNA upstream 509 47881573 ~ 47936656 (-) False LOC110527917
XM_036983388.1 mRNA upstream 509 47881573 ~ 47936656 (-) True LOC110527917
XM_036983391.1 mRNA upstream 56332 47937396 ~ 47982026 (-) False LOC110527918
XM_036983389.1 mRNA upstream 56332 47937396 ~ 47992180 (-) False LOC110527918
XM_036983390.1 mRNA upstream 56332 47937396 ~ 47992180 (-) False LOC110527918
TU700211 other downstream 593926 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 1988297 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3378245 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3378592 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4284033 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 605983 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1303360 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1303360 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1314540 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1414191 49295255 ~ 49297248 (-) True mustn1b

Expression Profile