RNA id: XM_036983387.1


Basic Information

Item Value
RNA id XM_036983387.1
length 6399
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110527917
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47881573 ~ 47936656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAATGTTAAACCCTTAGGAACGCCTACACTTTAAATTCCCATGTGGTGGGGGGGTGTATTTAGGACTCTCAAAAACTTCAATATTAAAGACGTGAAAATGAGACATAAATCTAAATCATCAACATTGGACCAAGAGTAGGCTTAGAATTGTGTCGAATGTTCCGTCGGAGGTAGCCTTATGGCAATAGCAGGATGAGCGGGAAGCGCGTGGGTACGTCCTGGACTCGAATCGCGGGGTGACCCCATCGTATGACTCACGTGCAGAGGCGGAGACTCCATATCTAAATCACTACTGGAGAGCTGTCTCTTTTTCAGACCGTCCAACGCGGTGGGAAAATTAACAAGAATAAGTCAACATCACATTATAATTTCAAGACCAAGGCAACGCAATGTTCACAATGTGAAGAAAATGTCCGGGATAAGTCCAGATTGGGTGGAGATCCTGGAGCCACGCTCTCGGGAGCGCATGTATGTGAACCTGGCCACTGGCGAATGCGGCTGGGACCCTCCCTTAGGCGCTCCCGTTCGTCAGGCTGACGGCAACCAGTGGTGGGAGCTATTTGACCCCCAGAGCGGCCGCTTCTACTACTACAACTCCGTAGGACGCCAGACTGTCTGGCACCGACCCCAAGGGGGCGACATAGTTCCCCTCTCCCAGCTACAGGCTATGAAGCGCTGCTCTGAGGCCAAGCGGGCCGGGGGaactggagagagggacagggagcctGGAACAGGTAGACTGGGGAGTACAGGCAGCCAGGGACACCGCACCCCTCGTCCAGAGCATTATGGAGCGGGGAGTACAGACAGCCAGGGACACTGCACCCCTCGTCCAGAGCATTATAGAGCGGGGAGTACAGACAGCCAGGGACACCGCACCCCTCGTCCAGAGCATTATAGAGCGGGGAGTACAGACAGCCAGGGACACCGCACCCCTCATCCAGAGCATTATGGAGTGGGGAGTACAGACAGCCAGGGACACCGCACTCCTCATCCAGAGCATTATGGAGTGGGGAGTACAGACAGCCAGGGACACCGCACCTCTCATCCAGAGCACCATGAACCAGGAAGCCTGGGGAGTACAGGCAGCCAGCGACACCACACCCCTCGTCCAGAGCATTATGGAGCGGGGAGTACAGACAGCCAGGGACACCGCATCCCTCATCCAGGGCATTATGGAGTGGGGAGTACAGACAGCCAGGGACACCGCACGCCTCGTCCAGAGCACCATGAACCAGGAAGCCTGGGGAGTACAGGCAGCCAGCGACACCGCACCCCTCTTGCAGAGCATTATGGAGCGGGGAGTACAGACAGCCAGGGACACCGCACCCCTCGTCCAGAGCACCATGAACCAGGAAGCCTAGGGAGTACAGGCAGCCAGCGACACCGCACCCCTCGTCCAGACCATTATGGAGCGGGGAGTACAGACAGCCAGGGACACCGCACCCCTCGTCCAGAGCACCATGAACCAGGAAGCCTGGGGAGTCCAGACAGCCAGGGACACCTCACCCCTCATCCAGAGCATTATGGAGCAGGAAGCCTGGGGAGTCCAGACAGCCAGGGACACCGCACCCCTCATCCAGAGCATTATGGAGCGGGGAGTACAGACAGCCAGGGACACCGCACCCCTCTCCCAGAGCACCATGAAGCAGGAAGCCTGGGGAGTACAGGCAGCCAGGGACACCGCACCCCTCGTCCAGAGGATAGTAAGCCTGTCCCCAGAACCCCTGAGACcccaagcgagagagagacttcaGACACAGTGGTGGACAGCAGACCAGCCCAGGGAGACAACAGCTCGGACGAAAGCAAGGAGTCACTGAGAGAGCGCTCTCAGAGATGGCAGCCTTCCCCAGGGTCTAAGGCAGCAATGTTGGTTAAAGTAAACAGTGTCAGTCGGATCCAGCCTGGAGGCCCATCTAGCCCGGACCTGCAGCTCcgccaccacaacacacacacacacaacaagcccAACGGCCACCAGGCCTTCACCCTCCACCCCGTCAGCAGCAAGCCCCCGGGGGCTCACTCCTGCTCCACCCAGGGCTACAAGACCGCACCCTCCGGCAAGATGGCCGCTGACGCCCGGCAGGCCCACCACTTGAGAAAGACCGGCAACGGCAGCTTCTGTCTGGTGTCCTCTGACCCTCCCCAAACTCCCGGCAGTCACAGGTCCCAGCCCAGCACCCCCAGGTCTGTGTCACCACAGTACGCCTCCACACCTCACCTCTACGACGACCCGGGAAAAGAGTGTCCCATCTATGATGAGCCTCCTGTGGACATGGAGGTGGAGGGAGCTCACCTCCATAATGAGCCTGGTGGTCTATCCCGTctcacccccacacacagcctgCAAAAGCCCAGGCTCCTCCAGCACCCTGGCTCCTCTCACTCCGAATCCAGGCACAAGAGGAACCCTTCTGCCTCTGACTACAGCCCTGCTGGCCTGGAGTGCATCAAGCACATGGTTGTTGTGGACCCAAAACAGggcctcctctccacctcccccggTCCCACTCGCACCCCCTCCCCCACACCACGATCAGACCCCCTCTTGGCCCATCCCCAGTCCCAGCCACGGGGGCAGCAGAGGGAGCCAGGGACCCTGGAGAAGAAGCAGACATGGCGAGCCCTGGAGGCCAGTGTGTTGAGGGCAGTGGAGGCTCGTCACAGCAGGCAGAGCAGCCAGGCCTCGCAGGACTTCCCCACACCTCCATGCCCCCAGACCACCGCCACCTACCAGGACTCTGGCTACTCCACTGGCCCCTCTCCGAGCCTGAGGAGGAAGAGCCGGCGAAGGCTGGGGGCCGGAGGCCGGCCTGGCTCAGTGGGCAGCAGCGGAGAGCTGTGTGCCCTTAACGAGAGGCTGATGGCGGAGATGAGAGAGGTGGTGAGCCGCTCCAACACCATGAGGGAGATGAAGGCTGGAGGCCTGGGGGCAGAGATTAGCGAGAGGGGCGCAGTTCCCCGGACACGTTCCCCCGTGGACTCCCTGCAGTGgtatggaggagaaggaaggTGTGCGTCACGAGAAGACGTCCCCTCCGCCAGCCGCTCGCTGAGCAGGGCGGGTAATCATGGCAACCCGGCCCTGCCACCCCTGGAGATGCCTGGTAGGCAGAAGAGGACCTATGAGAAGGTGGACACCTTGGAGAAGAGCATCACCAGTCAGGCCGGCCTTTCCTCACCAGACACCCCTGGACCTCCCTCAGAGGTGGGGACCCTGGAACTGAAGGCTCAGTTGGACAGCAGGAAGAAAGGTATGGTGGACGGACGAACAGGCTCACTGGGCCCACATCACCAACGCTCCGTCTCCCATGACAAcatagagggagaaggaagaggaggaataggaggctCCTACCACCAGCTCTCTTACGCCACCCTGCGCAAGCCCCCGCCCCCAGACACCTCAGGCATGGCGGACTGGGCCAGCAAGCACCTGAACATGCACACCCAGGGCCTGTTCCGCCGCCGTGTCTCCATCGCCAACATGCTCTCCTGGAACCGCGGCTCCATCAAGAAGCCCATGCTGGTGACCAGCGACCGTGCCGTGAGGAAGGAGGCCTGTGAGATGTTCAAGCTGGTCCAGGCCTACATGGGAGACAGACCCTCACGGCTGGACCGTCGCCACGCCGCCCTGCTCATCGTCACCAAGTGCTGGGGCATGCAGGGCCTGAGGGATGAGCTGTATGTGCAGCTGGTGAGGCAGACCACAGGCAACACCAGCCCTAGGAGCCTGGCTGCAGGCTGGGAGCTGATGGCTGTCAGCCTGGCCTTCTTTGCCCCCTCTCCCAAGTTCCGCTGCTACCTGGAGGGATACATCCAGAGGCACACGGATCCGAGCAGTGACAAGAAACGTGAGTCTCAAACTGAGCAACAGGTGGCTCAGTTCATACTAGACCAGCAGGACATGAAGCTGAAGAAGAACTCAAAGTCCAGAAAGAAACGGAAACAGAACACAGATGAAGAAGGTCTGCCCATCAGCACGTATGCAAAGTTCTGCTATCGCAAACTACAGAAAGTGGCCATAACTGGAGGCAAAAAGGGTCTTCGTAAGCCAACTCTGGAGGAGATTGACCACAGCAGACGGGCCATCGTGACCCCCTCCCTGTTTGGCAGCTCCTTGGACGAGGTGATGGAGCGCCAGAGTGAACTCTTCCCAGACAGGAAGCTACCCTGGGTACAGGTGCAGCTCTCCCAATACGTCCTGGCACTGGGAGGGGCCCAGACTGAGGGCATCTTCAGGGTGCCTGGAGATATCGATGAAGTCAACGCATTGAAGCTCCAGGTCGACCAATGGCGGATCCCAGAAAACCTCTCAGACCCCAACGTACCTGCCTCCCTGATGAAGCTTTGGTATCGTGAGTTGGAGGAGCCTCTCATCCCCATGGCCTTCTACAAGCAGTGTGTCAGTAACTATGACGACCCTGTGGCAGCCATTACTGTTGTACAGTGTCTGCCTGAGCTCAACAGACTGGTGCTGTGCTACTTCATCCACTTCCTGCAGGTGTTTGCTCAGCCTGCTAATGTGTCTGTTACTAAGATGGATGTCAATAACCTTGCCATGGTGATGGCCCCCAACTGCCTCCGCTGCCAGTCTGATGACCCACGAATCATCTTTGAGAACACACGCAAGGAGATGTCTTTCCTGCGCATGCTCATTGTTCACCTGGACACCAGTTTCATTGAGGGCGTTGTGTAGACTGACTCCCTTGACACCACGTGCCCCAGTGTCACTGAGAGATTCGCTCTGCGAAGCCCGCCCCACTCCATTGACCtatcacaaaacacacacacacactggaaatcaTACTGTAACAATACCAGAGTTGATCAGTTATGTCTTCAAAGGCAGGGTCATAAGAAGATAAGAGAATCCAGATGTTTCACCACTGAGTACTGTACGTAACACCGTCACTTGACAGTGGACCCATCCTCTGTTCTACTTTCTGACTGCAGAACAATACATCTGTGCCTACTGCATAGGTGACATTGTGTGTGATATGTGATGGAAACCCCACAATTATTGCACACAAAAAGACTACAAATGACTTTACATCATAGGGACCGCTTTTTATCCAGTTCATTTGGATGACTTTGTTTTAACTGCATGTAAAATCAGATTTTCCTCCTACATTTATAACTGAATGTGACGTGCCATTGTTTCTTTGCTGGATATGGGCTGTGCAGGAGGAGTCTCATATGGTTTGTACAGGATGGACATTGTCATCAGGAAACAGACCCAGGGTCCCCTCCTTATATCTATTTGGCCtcttgtatgtatgtgtgtctgtgtgtttgagtTCTAGAGACTCAGCCTCCAGTTCTTATTTACAAATGAGAAAAAATGTCTAATTTAAAAATGAGCGTGCCTGTGATGTTTTTAGTAGTTCTATCAACAAGACTGCATCAGTCTCACTGCTATGTTGGTGATTttatctaaaaataaaaaaaagttattcCACAGCCATTTTGATATAGAGCCACCGTCTATAGTCTGACTACAGTAGAGCCACAGTCAGAGCGTACATTTCAAAGTACAAACTGGAAGCAATAAGACCATGTGTTTTGGAGCTTGTGTAAAATGCCCGTTTTAGTGGTCTCCTCAACAGTGTGTGTTGTGCAATAACAACCCTCTGATTTTCAACTGCTGATGGAGGATGTTATAAATGTATTCTGGTacatgtatgtactgtgtgtatggGAGATCTATtcggcagcaggtagcctagcagttagagcgttgggccagtaaccggaaagGTCGCTGCTTGGAatgcctgagctgactaggtgaaaaatctgttgacgtgcccttgagcaaggcacttaatcctaatttgctccagggttgccgtactactatggctgaccctgtaaaacacgtTTCACTGCATTTATCTAGTGCGTTgccaaaaataatgttttttttgttgcaatacACCAATATTGAAAGAGGCATAAACACATGTGTAAAGTAGTAACACTATCACTTCTTTTCACCATAGATATTTTGGCTCAGGTGTTCTGTTAAAACGGGTGTAGTGATAACTGCTCTCTGCTTCCCTCGGTAACTGAAGGTCTGAATTTCACATGCATCCAAACTATGATATAGTAAACTGACGATGTAGATAAGACACTCCCTGGAAGCTTTCCTGTGTAAATAATGCTTGTAAATAGTAACAGTAACTCTGGCTGTATTTTCAAATGATCCATGATAAAGATGAACCTTTTTGATTTTGTAACTACTCATAATTTCCCTCCTGCAAGCTTGCCTTTGAAAATAGTACTGATTCAACCACTCATTGTTTGTGTTGTGTATTATGTGAACATACCCTCTGTTATTCTATGAAATGATTGTTCAAGAAAAATAAAGGTTTAATTGTAGACTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701196 lncRNA downstream 132487 47647543 ~ 47749086 (-) True G616162
TU701146 lncRNA downstream 340387 47540909 ~ 47541186 (-) True G616112
TU701090 lncRNA downstream 385507 47425852 ~ 47496066 (-) True G616058
TU700205 lncRNA downstream 650419 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 652106 47229181 ~ 47229467 (-) True G615254
TU701394 lncRNA upstream 72140 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 110260 48046916 ~ 48047153 (-) True G616358
TU701430 lncRNA upstream 116281 48052937 ~ 48053207 (-) True G616364
TU701438 lncRNA upstream 121771 48058427 ~ 48058632 (-) True G616370
TU701472 lncRNA upstream 194445 48131101 ~ 48131464 (-) True G616402
XM_021609524.2 mRNA downstream 509 47863997 ~ 47881064 (-) False LOC110527915
XM_021609526.2 mRNA downstream 509 47863997 ~ 47881064 (-) True LOC110527915
XM_021609528.2 mRNA downstream 533 47863997 ~ 47881040 (-) False LOC110527915
XM_021609527.2 mRNA downstream 538 47863997 ~ 47881035 (-) False LOC110527915
XM_021609525.2 mRNA downstream 554 47863997 ~ 47881019 (-) False LOC110527915
XM_036983391.1 mRNA upstream 740 47937396 ~ 47982026 (-) False LOC110527918
XM_036983389.1 mRNA upstream 740 47937396 ~ 47992180 (-) False LOC110527918
XM_036983390.1 mRNA upstream 740 47937396 ~ 47992180 (-) False LOC110527918
XR_005052592.1 mRNA upstream 740 47937396 ~ 47992180 (-) True LOC110527918
XM_021609538.2 mRNA upstream 137792 48074448 ~ 48099619 (-) False LOC110527920
TU700211 other downstream 611502 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 2005873 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3395821 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3396168 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4301609 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 550391 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1247768 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1247768 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1258948 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1358599 49295255 ~ 49297248 (-) True mustn1b

Expression Profile