RNA id: XM_036983390.1


Basic Information

Item Value
RNA id XM_036983390.1
length 5316
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC110527918
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47937396 ~ 47992180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gCTGAAAactagaaagagaggagaacgaTATAGGAAGAAAAGAGTGGGAGaaaaagagaaggggaggagagaaagagacggggGGACAACGAGGAGAAAAAGAGATTGCAAGTCAGATGGAGTGTAGGAAAACGATAGAGCTAGAGCGTGTCAGGAGTGTGTTGGAGTAAGTGATAAAAAGTGCAAGAGCGTAAGACAATatgtgatagagagggagagggagggagagacagagatgcggCGAAAAGGGGAGTGAGGCGAAATTGAATTGTAGATAGAGGGACCTtcactcctcctccttccctccctcttttatCAATCTCCTCTGAAACCACGCCTCCCTCCTTTCACTTGGGTGTGCATCTATAACAGTGGGCGGCTGTGTGGGGGATAGACTCTCAGACTGCCAGCAGAGCGGACAGTAGGGCACAGGACAGGAGTGTGCCAAGACTGGTCAGAGCaggtgtatgcctgtgtgtgagCTGACGGACGGAGCTCTGTGTGCGTCCTGTGTGTGTCGCCTCACCCGCTCCACCCAGGGACATCGCTTCTGAGGAGCACAGCTGGGAGCTCCATGTTATGATGACTGCAGATAAAGAGACCGTGGTCTCTGAACACTGCGAGAGAACATTTGAGAAGCATTGTTTGGAACGGAAGTGAGGGAGTACGGCAGCAGAGTGGCCCCTGCTTCAGTGAGAAGGAGGTGAAGACAAGGTAGAGCCATGGGAGGACGgggcctccttctcctcctcctcctgggggTGGTCTCCCCGGCCCAGGGCTCGTCCTTCCTCTCCGGCCAGCGCCACCGGATACGTCTGCAGAGGGATCGCCAAGCCCGCAACAATGTCCGACCCAACATCATCCTCATCCTCACTGACGACCAGGACATCGAACTGGgctCAATGCAGGCCATGAATAAGACACGGCGTATCATGGAGCAGGGAGGCACCCATTTCTCTAACGCCTTCTCCACCACTCCCATGTGCTGCCCATCGCGCTCCTCTATTTTGACAGGGAAGTACGTTCACAACCACCACACCTTCACCAACAACGAGAACTGTTCCTCGCCGTCCTGGCAGGCCCACCATGAGCCTCACACCTTCGCTGTGCACCTTAACAACTCAGGCTACAGGACGGCCTTCTTTGGGAAGTACCTGAATGAGTACAACGGCTCGTATGTGCCCCCTGGCTGGAGGGAGTGGGTAGCGCTGGTGAAGAACTCTCGCTTCTACAACTACACTCTGTGCAGGAACGGTGCGCGGGAGAAGCATGGCAGCAACTATCCAAAGGACTATCTCACAGACATCATCACCAATGACAGCCTCAACTACTTCCGCTCCTCTAAGAGGATGTACCCCCACCGACCAGTGATGATGGTCCTGAGCCACGCTGCCCCACATGGGCCAGAGGACTCAGCACCGCAGTACAGCACTGCCTTCCCCAACGCCTCGCAGCACATAACCCCGAGCTATAACTATGCTCCTAACCCAGACAAGCACTGGATCCTGCGCTACACAGGCCCCATGAAACCCGTCCACATGCAGTTCACCAACATGCTGCAGCGCCGGAGGATGCAGACCCTGCTGTCTGTGGACGACTGTGTGGACAAGGTGTACAACATGCTGGTGGAGACAGGTGAGTTGGACAACACCTACATTGTTTACACATCAGACCACGGCTACCACATTGGCCAGTACGGCCTGGTCAAGGGCAAGTCCATGCCCTACGAGTTTGACATCCGGGTGCCCTTCTACATACGAGGCCCCAATGTGGAGGCAGGAGCCATTAACCCTCATGTGGTGCTGAACGTTGACCTGGCTCCCACACTGTTGGACATGGCCGGAGCCGATGTTCCCTCTGATATGGACGGCAAATCCATCCTCAAACTCCTGGACACAGACAAACCTGTCAACAGGTTCCAGGTGAACAAGAAGGGGAAGATGTGGAGGGACTCCTTCCTGGTAGAGCGAGGGAAACTGCTCCACAAGAAGGCTGATGGGAAGGAGGTGGCCCAGGAGGAGAATTTCCTCCCCAAGTACCAGCGGGTCAAAGACCTGTGTCAGAGGGCAGAGTACCAGAGCTCCTGTGAACAGCCAGGGCAGAAGTGGCAGTGTCTGGAGGACCCGTCTGGTAAGTTGAGGCTGTATAAGTGTAAGGGAATGGCCAGTCTCTATGCCCCACGTATGCAGGCTCTGATGGCCAGCAGCGGGTCCCAGCAATGGGTTGGACACGTCTCCAATGCTGGAGACAGCTGTGACTGTGGCCCCCTAGGCCTCAAAATTACACCCCTGAAGAGGAAGAGACTGCTTACCAAGAAAAAGGTAAAGTCCACTAAGAGTCTGACTAGGAACCGTTGGGCCCGGTCCATTCCCTTTGAGCTGGATGGAGACCTTTATGCTGTGGACCTGGAAGAGGGCTACAGGCCCGTGGGCCTCCGGAATACCAGCAggcctggggagaggaggagaggagcggtcCTGCAGGAAGACGACGATGAGGAGTTCAGTGGAATGGGAGTTACAGCCAGACCTACAACCAGCAACAGCCTTACACCACCTGCCGCTCTTAAAGTCacctacagGTGCTCCATCCTGATGAATGACACAGTCAGGTGTGATGGAGGACTCTACAAATCCCTCCAGGCCTGGAAAGACCATAAGCTCCACATCGAGCACGAGATTGAAACCCTGCAGACGAAAATAAAGAACTTGCGTGAGGTCAAAGGTCACCTGAAGAAGGTTCGGCCTGAAGAGTGCCAGTGTAACACCCCCAATTACCTGTCCAAGAACAAAGGGATGTTCAGACTCGATGCAGGCCGCATTCACTCACTAAACAAAATGCCCTCTAAGCAGAAGAAGCAGTGGCTGATGAAGGAGCAGAAACGTAGGAAGAAACTCCGTAAACTGCTCAAGAGGCTCCGCAACAACGACACCTGCAGCATGCCTGGTCTCACCTGTTTCACCCATGACAACCAGCACTGGCAGACTGCCCCCTTCTGGACAATGGGTCCATTCTGTGCTTGTACCAGTGCCAACAACAACACTTACTGGTGCCTCAGGACCATCAACGACACACACAACTTCATATTCTGCGAGTTCGCCACAGGTTTCATAGAGTATTTCGATCTGAACACTGACCCATaccagTTGATAAATGGGGTTAGCACCCTGGACCGCACTGCCCTCAACCAGATGCACCAGCAACTTATGGAACTGCGGAGCTGCAAAGGCCACAAGCAATGCAATCCAGAGACAGGTGGTAAAGACAGAAACTCTTTAAGTGAATACAGGCCAGTTCATCGTCGAAAGAGGCCAAAAGTGAAGAAGCCCTCTTCCAAATCCCTAGGGCAGATTTGGGAAGGATGGGTTGGTTAACAACCTGTGTCCCACAACCCACCACATTGCAGTCTGCCAATAGAGGAGGACCAGAACTACTGGTGAACCTGAGGACTTTGTACAGACTTCATGGGAATGTAATCTGATCTACCATTATTGTGGGAGTTTATGGAGGACGATGCTGATCCTACATTAGCTGCCACTGATGCTCAGATCATCACCCAGCAAAGCAAATACTGAAACATCCAAGAAAATGAAAACTATaacctctcctgtcttctctctttctctctctctctctctcacacacacacacacacacactcattcactcgCACAGGAATGTCCTCACCTCTCATCTCCCATCACGCCAGTTGTCAGGACCGCCAAACTGAGTTGGAGACTGATCAGTTGAGTGGGGATACACTTCGAACCTATACTTTGACTTCCAACAGTCACCCTGTGTGAACAGTGAATGTGAGGTGTGTTTAATATTAGTCTCTCATAACCGCCTTAACATTGGGTACCAAGATTAGTTTAATGTCAATTCTGCTGCCACAACCTGAAATGTATCATCCCTTATGGCATTGTGCCACATCTGGGTTAAATCGTCACCCCGTGGGAGTATGATGTCAGGCGATAACATCAAGTCAAGCTTTCGCCTCACTGCACAGCATGAAAGGTATTGTCCAGAACATGCTAGCACGCCTGAGGGGTATGCTACAAAGCAGTATAAAGGAGTTAGCCTGCTAACTTGCCTGAATATTCTGAAATAACTTATTACTTCTTAGAAAGATAAGCTTGACATATGTATGGTCTAATTAACTTAACCATAAACACATATCTATGTTTAGCtttcttaatgaaccagaaaATCAACTGTAAAATGACATCCACCAATGAAATGTACGCATTCTGCTGGTGTGAAGATGTTTGTTTGGTAGTCTCGTCTGTATCATTGCCTAGGGGTGGTGGGGTAGTGGTTAGAGAAGTCCTGGTTTGAAGTGAACAACTTTATCAAAGTTGaacctgctttgtagtatacaaCTCTGGAAACTTCTCACTTCTTTTTGTTTGTGTTATGGCTACAGAATGGTTCCCCAGGACATTTACTCCATTATTTTGCAATATACATTATATTAACGTTGATGTCATGCGAGGATTCTTTACACCCCCCCAAGGATGATACAGGAGTGAGAACGACAACACACCAGACTGTATGGGGATGGAGCTGGGCAGGATATGAAATACACATCACATCACCACCTAGCTTATCCCCCCTAGTTCACTTTAAACCAGGATGGAACTTCGCTAACCACTACCCCCCACCCTCCTAGACAATGGTACAGACGAGACTACCAAACAAGCATCTTCACACCAGCGGAATGTGTACATTTCATAAGTGGATGTAATTTTACTCCTTTGTATTGCTAATGCCACCTGCTAGATCCAatcatgttagtttgttcagCTTGCTATACATGGTGCTATGATAACATTGCGAAAAATAAAGACTTGctgtacagtatgtatttgaATGTATGTTGTGCAATTAATATACATGTTTACAATATTTTTTATAATTCAGAAAAATAGGCAGACCTCTCTTTCGTGTTTGATATGAGTTGACAAATATTACCTTTTAGAAAGAACGTAGCTTGATGAATTTTCCTAGCTCTGTATTTGTCCATTTGTCCTGTCTGGACATCTCTCTGAatttctcctctgctctctcaaACCCCACTGTAGTTTTAAAATACTTATTTAAGATGAGAAAGCATTTAGAAAATATTCACTGTGAAAATAAGTCCCTGTAAAATGACTCTGTTGTACACAAGAGTAAACAAGTTCCACAACAATGTAATGCATCTTGACTTGCATATTAATTTATTGCCCTCATGTTTAGCATTCTTTGTTTCTTAGCAGTGAGACTCCCATAGCAGAGTTTTGATTGTGAATAAAGTGTTGATTGCCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701196 lncRNA downstream 188310 47647543 ~ 47749086 (-) True G616162
TU701146 lncRNA downstream 396210 47540909 ~ 47541186 (-) True G616112
TU701090 lncRNA downstream 441330 47425852 ~ 47496066 (-) True G616058
TU700205 lncRNA downstream 706242 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 707929 47229181 ~ 47229467 (-) True G615254
TU701394 lncRNA upstream 16616 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 54736 48046916 ~ 48047153 (-) True G616358
TU701430 lncRNA upstream 60757 48052937 ~ 48053207 (-) True G616364
TU701438 lncRNA upstream 66247 48058427 ~ 48058632 (-) True G616370
TU701472 lncRNA upstream 138921 48131101 ~ 48131464 (-) True G616402
XM_036983387.1 mRNA downstream 740 47881573 ~ 47936656 (-) False LOC110527917
XM_036983388.1 mRNA downstream 740 47881573 ~ 47936656 (-) True LOC110527917
XM_021609524.2 mRNA downstream 56332 47863997 ~ 47881064 (-) False LOC110527915
XM_021609526.2 mRNA downstream 56332 47863997 ~ 47881064 (-) True LOC110527915
XM_021609528.2 mRNA downstream 56356 47863997 ~ 47881040 (-) False LOC110527915
XM_021609538.2 mRNA upstream 82268 48074448 ~ 48099619 (-) False LOC110527920
XM_021609535.2 mRNA upstream 82268 48074448 ~ 48118077 (-) False LOC110527920
XM_021609540.2 mRNA upstream 82268 48074448 ~ 48118077 (-) False LOC110527920
XM_021609539.2 mRNA upstream 82268 48074448 ~ 48118078 (-) False LOC110527920
XM_021609537.2 mRNA upstream 82268 48074448 ~ 48118085 (-) True LOC110527920
TU700211 other downstream 667325 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 2061696 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3451644 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3451991 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4357432 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 494867 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1192244 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1192244 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1203424 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1303075 49295255 ~ 49297248 (-) True mustn1b

Expression Profile