RNA id: XM_021609538.2


Basic Information

Item Value
RNA id XM_021609538.2
length 6833
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC110527920
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48074448 ~ 48118085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACTCTTGTTAGATGCCTTTTTGTTTCTTTATGACTGTGGGGGTGGGGGTTGGTTGAATGGTTGAATACAGGGTAATTGCGCCAAATGTATCTGCCACTGCTTTCATATTTGAAGACCAAAGACAGGCTGTGCTAAGACATTGAGACCCTAGACTGTGAATGGATTTTGATTGGACACAATCAGGTGAAGgtGTTGACATGCGCTGAGGATGAGTGAAGTGGCAGACAACTCGCTGGAGCCCATGTGCTCCGAACGGAAACGCAAGATCTCCACCTGCGATACACCAGGCATGGGATGTGACAAGCGCAGGAAGGAGCAGGAGAGTAACTACATGGAGGAGCTGGCCGAGCTGATCTCTGCCAACTTCAGCAACATGGACAGCTTCAACGTGAAGCCAGATAAATGTGCTATCCTCAAGGAGACCGTTCGGCAGATCAGGCAAATCAAAGGGCAAGGGAAGAGCTCGTGCAGCGATGACGATGTCCAGAAGGCAGATGTGTCATCCACCGGTCAAGGGGTCATTGACAAGGACCATCTGGGACCGTTGCTGCTACAGGCCCTGGATGGCTTCCTGTTTGTGGTGAACCGGGAGGGCAGCATCGTATTTGTGTCTGACAATGTGACCCAGTACCTGCAGTACAAACAGGAGGAGCTCATCAACACCTCCATCTACAACATCCTCCATGAGGACGACAGGGAGGAGCTGCACAAGAACCTGCCCAAGACCAGGGCACCCAACGGTGGGTCATGGGGAGGAGAGGCACCGCGGCAGAAGAGTCACACCTTTAATTGTCGTATGCTGGTGAAGTACGGTCACGGGCAGAGCCATCAGAACCATGGTCCGTCTGAGGAGGGGCCCAACAGGCAGCGCTACGAGACCATGCAGTGCTTCGCCCTGACTCAACCCCGCACCATaatggaggagggagaagacctGCAGTCGTGTATGATCTGTGTGGCCCGGCGCGTCACTGCAGTGGAGAGGACCGAGAGGTTCAGCACCCGCCATGAGCTCTCAGGTAAACTGATAGAGATCGAACAGCAGAGTTCTCTCCACACCACCATGCGGCCAGGGTGGGAGGACCTGGTGAGGCGCTGCATGCAGATGTTCCTCCATCGCAGTGAGGGCCATCCCTGGTCCTACAAACACCACTACCATGAGGccTTCCTGCATGGCCGTGCCGAGACGCCGTCTTACCGGTTCTCTCTCTCCGACGGCACCCCGGTCACTGCGCAGACCAGGAGCGAGCTCTGTCGTAGCCGCGCCGCCAATGAGCCACCCACCTTCCTCTCTACCCATCTGCTACAGAGggagcagaaTGGTTACCAAACCAACCAGGGGGGAGTGATGAGGCCCCAGGGCATGGGTGTCACCAACCCCAACACTCAGATGAACATGGCCCCTGGAGGGGGCAGTGGTGGCATGAACAGGGGCTACGGTATGGGGGCAGAGCAGGGGCACATGGGACAGAGAGGCAGCCCCTCGTACACAGGGGGAAATGGGATGAACTCCATGAATCCGATGAATCAAATGAACCGCTCGTTGCATCAAATGAACTCTCAGACGAATTCAATGGGTCAACCGATGCACAACATGAGTCAGATGAATTCCATGAATCAAATGAACTCCATGCGTCCAATGAACTCTCGGATGAATTCCTTGAACCAGATTAATTCTATGAGTCGGATTAACCAGATGAATCAAATGAACCAGAGGAATCAGATGAACCACCCTGGAATGCAGCAGCAGTATccacagcagcagcaggcccCATTCCATGGAGCGGGATACAGCATGGGGGGCATGACCAGCCCCCCACAGAGCAGTCCAGGGATGAACGCCCCCCAGCAGAACATTGGCTCCCCTAGAGTAAGGAGGAGCCCCAAAATAGGTGCTAGCCCCTTCTCCCCAGGAGGTATGCATTCTTCCATGAGCTCGGGTCATCCAGGTGGTCCTGGAGGCACAAGTGGTAGCACCAGTTTCTCCAGCAGCTCCCTGAGTGCCCTCCAGGCCATCAGTGAGGGGGTGGGCACCTCTCTACCCTCGGCCCTCCCCACGCCCCTGAACTCTCCCCCCACACACAAGCCTGACAGCTGCCTCAGCGCCAACTCCACCCAGCAGGGGCAGTGCCATGGTGGAACCTGTAAACAAGGCAGTTCAGACTCCAAGAGCCCGGGCAACACTCTGGCCAGTGGAGGAGAGCAGCAGCGCACCCCCACCACAGAGGTGACCCCAGACAGCCAGGCCAACAGTGAGGGCCCAGCCGGGGGAGAAGCCAGCCGACCGAGCCATGACAACAATGGGGGCCACAAAAAGCTCCTGCAGCTCCTCACCTCCCCTACGGAGGAGCTAGTGCCCCCTAACCACCAGGCCGGCCCTGGCAACACTCCCATGGGCTTTGAGTCCAAGGAGGGATTGGGGGGTTTGACCAGCCCCTCTACAGGCGTATCCTCTTCCACGGCTGCAGTAGGACAGCAGGGCCTAGGAGCAGCTGCTGCAGCAGCACACTTTGCCAACCAGTCCCTGCAGGAGAAGCACAAGATTCTCCACAAGCTGCTGCAGAATGGCAACACCCCAGACGAGGTGGCCCGCATCACAGCCGAGGCCACTGGGAAGGTCACAGATGGTGGGGGTCCAGAGGCTGGGCCAGGAGATCCAGAAGAGGGACCAGGGGCGAGGGGGGCTGAGGTGAAGCAAGAACTTCACAGCCCCAAGAAGGAGAAGACCCACGCCCTCCTCCACTATCTCCTCAAAAAAGATGACTCCAAAGAAGCAAGGGGTGATGTCCAACCAAAGGGCAGAGGAGCCCAGGGAGCATCCTCAGTGGTCACGACGTCTGAACCCAACCCCATTGTGGAGCAGGTCAAGACTGAACCACCTGATGAGTTGGAAACCCTGGAGACAATTCTCGGAGGCCGCAGGAACTCCAGCTCCGGGTTTAATCCCGAACCGGACTCCAGAGCAGGAAAAGAAGGGGGAAACCAGCAGGGAAATGGCCCAGGCAGTTTCCATGATGTGGAGAGAGGAGCCATGCTGCCTGCCCGGCGTGGGCCCCTCCAGAGGGCTCTGTCAGTGGACGCTAAACCCCTGGTTGGTGGTGGATGCCTGGCTGGGAGGAGGAATGTTCCCTGCCCCATGCTCATCAAACAGGAGAACGTGGAGGCCCATATCCAGCCAGGCATGACCAACGGCTTCCCTGGACCAGGAGGCATGGGTGTGTGTCCATTACGGGGTGGTGCCGGCACAAGTATGAACAGGGGTATGGGGATGCCACAGCGGCCTCCCATggcagggcaaggtgactgggggATGCCCAGGTCCAGTGGAAGTCCTGTGGGGGTGCCAGGTCACCCCTCAATGGGCCGGCCAGGGATGGACTTCAACTCCAAGGGCATGATGAGAGGCCCCATGGTCATCAGGTCCAACAGTTTACCTGGCAACACCAGGTCTATGCTGCAGCAGCAACTCGTAGAAATGGGTTCCAGTGAGGTGAATATGGGGATGAGTCCCTTCAGTGGGCAGGgtcctccacctctgtccccctCCTGGCCTGACAGTGCAATGGGAATGGACGGACCACCAGCTACCACAAATAGGCGTCAGTTTGGAAACCCCCTGGATGAGCTCCTGGTGCCGCCCTCCACCAGCCAGGGGCAGAGTGATGAGCTGGCGCTGCTGGACCAGCTGGactctctgctcaacaacactgatgtTATTGCCCTTGAGGAGATCGACCGGGCCCTGGGCATCCCCGACCTCGTAGGACAGagtCCTGGTCCAGAGCAGCAGCCAGGTCCTGTCCCAGGACCAGACACCTCCATGGGGATGGAGCAGAAGCCCATTTATGGCCAGGGGTACCCAGGACCCCCCTCCATGGGCTTGCAGTCAGCCTATGTGGCCAACCCCATGCAGGGCCAGTCCCCTTCTGGCTTCAACCCCATGAACCAGATGGGGGCTCAGGCAGGCCCAGGGGGCTTCCCTGGCATGGGGGGCATGAGTCACCCCCGTCCCAACATGAGACCCCGCATGATGAGTGCCACCAAGCCCCTCCGACTGCAGCTGCAGCAGAGACTACAGGGCCAGCAGTTCATGAACCAGACCCGTCAGGCCATGGGCATCAAGATGGAGAATGCCCCTACAGGAAACCCTGCGACACGGCCTGGGATGGAGCCCGGCATGAGCGGTCAGCCTGGCTTCTTGAATGCTCAGATGATGGCTCAGCGCAGCAGAGAGATGATGACCATACAGATGAGGAGACAGCGGATGATGATGTtaatgcagcagcagcagcaacaggctGCAGCAGGAGGCTTCAGCCCCCCTCCTAACGTAACAGCCCCTGCAGGCATGGACAACCCCATGGCAGGACCACCCATGAACCAGCCAGGACAGCAGCAGTTCACCTACGGTGGAAACTATGGAATGAACCAGCAGGGAGACCCCTCATTTGTAGGCGCAGGCAGCAACATGATGCCAGGTCGCATGGGAGGGCCTCAGAATCCCGTGATGCAACAACACCCCCAAGGCAGCCCCATGTACCAGTCAGCAGATATGAAAGGCTGGCCACAGGGTGGCATGGCACGGAACAACTCATACCCCCAGCAGCAGTTCACCCAGCAGGGGAACCCAGGCCAGTTTGCGGGGCCCATGATGATGAATGGCTCCATGGGCGGGCCAGGTCCGATCAGTGGTGCTGGTAGAGCACAGATGGTCCAGATGCAGGGCCAAATGTCTGGGCAAATGCAGGGGCAAATGCAGATGGGCACGAACTCCATGGGAATGGGCAGAATGCCAATGGGACCTGAACAGAAATATTGCTGAAAACGTATGTAATCAATAAGCGCCTTCACCAGGAAGGCAGCAGAGACTACAGTGCACCACCTGGGTGGGTGGGAGATGGCCTGGCCAGGGCCCACCAGACACAGCTCCAAGATCTGCTCCCGCCACTGTTCTCAGACCTGTGTGTAGAGAGACTCGAAAGAAGCCTCAGTGAGAATGAGAGACTGAAATAAAGACACATCATACCTAATGCAGCCTCTCAATGTAGGTTTCTTCTCTCTGGAGGAGTATATGAGTGGCTTAGTTCAAGAAGACGCCATGCTTTCTCTTCCTCTAACCTGTGGGAGTGTGATCGGCGTCCTGCCTTCTACACCAGAGGAGGCCTCATCGTGTGTGTGTTAGTCGGattccgttgcaaaacattttgcaacagataCCGTTTACTCTTGGAAGcaaacggagcaaatggaacagaactgagggacctacctgaatttgtccaatagaaacttgttTTTGTTGCACAAAAAAATTATCCATTTGGAGTAAACTGTTTCCGTTGcgaaatgttttgcaacggaatCCGACTAACACCTCTTGACCCCTGGAGCTAGCTGTCATGCACTATTCAGCATCAACACTGGTAAACAGAATCTATTTGATACAGGATGGGATACGGTACAACTAGCTATGGCTGCACTTTACCAGAAGGCTTCTATGTAAAAGGATTGTTGCAATATTTCTTAGTCATTACAGCCTTACCAGCGATTCAATGCTTTCACAGCATTGGTTTTCTTTTCCTTTTATCCTTTGGATGCACCTCATTTTATGTTTAAGTCATCAGGAGCTATAAGCACAGGTTATTTCTATATATTATGCAGATTCAAGCAATAAAACATCTGCTTTAAACGTGAACTGAGCGTCATGAACTCCTAAGCAAACGGTACTCCAGTATTAGATCAAATTAGTCACGAATGTATTCTATGTGAATACAAATTGTAAATATGCTATAAATGTATCATACATGCTTTTTATAGATCACTTTTTTTTGCACAGTGTAAGACTTGGTCAAATTCTAACTCATCTTTGTCTAGAAGGTCAATACACTTTTAGTTTGCAGTTAATTTGAACCTTTTGGAACATGAGTGAGGGTGTGGGTTTCCCATTTTCCACTTAGTCCTTGTCCTCtgaactttttttttatttttatttttttttacctgataAAAGCCATCTTTCTTTTTAGAAGCACTTTTACTTCTGATTTGGTGTGTTGACTGTTTGGAACTTCTGAAATTATCAAAAGGTTTGATGGTGAATGAAGAAAGGACAGTCCCTCAAATGAGCAGATGGTTGGCAAGCTGATGTGTAGGATACAGATATGTAAACGTTGTAGAAAAAGATGGTATGGGGGGACAGTTTCAGGAGTTAACAAGGGACTGTTCCTAAAGTAGTTATTGTTCCTTCCCTAGCTCTCGCCTTCATCATTTCCTTTGACTGTTACTCTTCACTCTGAGAAATCTACCTTAACAGTGCGCAATCCAAAGATATTTTTCCAGTTCATTGTATAGCTTCTGACGTTGACGGTGTACATTTTTTATCTATGCATTGTATATGCAGACAGTTACCGGGTACATTTTATGAAATGATAAATGCATATTTTGATTTTGGACTGAAAGCATAGGGGACTGCGTATTGTTCAGAGGCCAGTGGGTAGTTAACAGTAGCAGTAATGTGGATCTATAATTGACTGGCAAAGTCCTTTGCTGTGGAAGAGGAATACCAtatggatttttattttttttctcaaaatatacattttcaatgTCCTGCTTTTAATCACTTCATAAAATTACCTAGGTAGAATttgaataaagagcaaaaacaaaggATCTTTTCACCTGGGTATTCTTATTTTgtttccttttttattttataGGATGTATATGACAGTTTGTACTGATTTTGATGTAAATGTTTATTTAAACTCATGAGTCCCAACTGTAGTTTCTTTTGCCCGCTGTTCATTAATAAAGAAGAATTGagggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701438 lncRNA downstream 15816 48058427 ~ 48058632 (-) True G616370
TU701430 lncRNA downstream 21241 48052937 ~ 48053207 (-) True G616364
TU701424 lncRNA downstream 27295 48046916 ~ 48047153 (-) True G616358
TU701394 lncRNA downstream 65224 48008796 ~ 48009224 (-) True G616328
TU701196 lncRNA downstream 325362 47647543 ~ 47749086 (-) True G616162
TU701472 lncRNA upstream 31482 48131101 ~ 48131464 (-) True G616402
TU701513 lncRNA upstream 86420 48186039 ~ 48186242 (-) True G616440
TU701515 lncRNA upstream 87270 48186889 ~ 48187220 (-) True G616442
TU701520 lncRNA upstream 106040 48205659 ~ 48206004 (-) True G616446
TU701525 lncRNA upstream 106633 48206252 ~ 48206540 (-) True G616447
XM_036983389.1 mRNA downstream 82268 47937396 ~ 47992180 (-) False LOC110527918
XM_036983390.1 mRNA downstream 82268 47937396 ~ 47992180 (-) False LOC110527918
XR_005052592.1 mRNA downstream 82268 47937396 ~ 47992180 (-) True LOC110527918
XM_036983391.1 mRNA downstream 92422 47937396 ~ 47982026 (-) False LOC110527918
XM_036983387.1 mRNA downstream 137792 47881573 ~ 47936656 (-) False LOC110527917
XM_036983410.1 mRNA upstream 115308 48214927 ~ 48241830 (-) False LOC110527922
XM_036983412.1 mRNA upstream 115308 48214927 ~ 48241830 (-) False LOC110527922
XM_036983404.1 mRNA upstream 115308 48214927 ~ 48241833 (-) False LOC110527922
XM_021609549.2 mRNA upstream 115308 48214927 ~ 48241834 (-) False LOC110527922
XM_036983403.1 mRNA upstream 115308 48214927 ~ 48242126 (-) False LOC110527922
TU700211 other downstream 804377 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 2198748 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3588696 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3589043 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4494484 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 387428 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1084805 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1084805 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1095985 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1195636 49295255 ~ 49297248 (-) True mustn1b

Expression Profile