RNA id: XM_036983395.1


Basic Information

Item Value
RNA id XM_036983395.1
length 5160
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC110527921
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48127960 ~ 48168204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATACTTTCCTCAACCACTCGGCCACTTATCGGTTTCCGGGacacggaggagaggaggacggagggGTCAAGGAGAGGACATAATTTTTCCCAACTGAGAATCTCCCAAGCGCTTCTTTCTCCAGCCTGCCTGTGTGGAACAAAAGATTAGCAGCCAGGAAATGCCCCAGCCAATCAGCTGCAGCCTTACATCATGCCAGTGAGAGCAGGCCACTCACAACCTGGCTTCTATCCTAGCAGCCCATCGGCCAGCCTGGAGAGCCGTGGCTATGCTCTGAGCAGGTGTGGCTGAGGAGGAGGTGAAGACTGAGTCAGATGCAGTAGAGGGGATGGAGATCTCTACACGATCCAAAGTTTCAGTCCCTGGATTAGTGGAGCGAGCGGCGCAGAAACGAAAGGTGCCCAGCCCCCCTCACTCATCCAACGGTCACTCCCCTGCTGAGACCTCCTCCAGCCCGgtcaaaaagaagaagaaaccagGAGCAGTCAGCAGCAGTAAAGACCAGTCAGAACTAAGACATGGTCCCTTTTACTATGCGAAGCAGCCAGCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGACGGCAGGAATGACTTTTACTGCTGGCTGTGCCACCGCGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCGAGGGTGTACCACGCCAAGTGCCTCAAACTGCCCGCAGAGCCCGAGGGTGACTGGTTCTGCCCTGAGTGTGAGAAAATAACAGTTGCTGAGTGCATAGAGACTCAGAGTAAAGCAATGACGATGCTAACACTAGACCAGCTGTCTTACCTGCTAAAGTTTGCACTCCAGAAGATGAAACAGCCAGGTGACCAACCACGCTCGTCATCTCACTCCCCCCATGCAGCCGCCACGCAGAGAAAGGCTTTTAATTGGACGGAACCCTTCCAGAAGCCAGTATCTCTGGAACAGCATCCGGACTACGCAGAGTATATTTTTCACGCCATGGACCTCTGTACATTAGAGAAGAATACAAAGAAGAAAATGTATGGCTGTACCGAAGCTTTCTTGGCAGATGTGAAATGGATTTTGCACAACTGCATAATTTATAATGGAGGAAATCATAAGCTCACTGCCACAGCTAAGGTCATAGTGAAAATCTGTGAACATGAGATGAATGAGATTGAAGTCTGTCCGGAATGCTATCTGTCAGCTTGCCAAAAGAGAGACAACTGGTTCTGTGAGCCATGTAGTGATCCTCACCCTCTAGTGTGGGCCAAGCTGAAGGGGTTTCCATTCTGGCCTGCCAAAGCACTGCGGGACAAAGACGGGCAGGTGGATGCTCGCTTCTTTGGGCAACACGACAGGGCGTGGGTCCCCTTAAACAACTGCTACCTCATGTCCAAGGAGATTCCCTTCTCTGTGAAGAAGACTAAGAGCATCTTCAACAGCGCCATGCAGGAAATGGAGGTCTACGTGGAGAACATGAGGAAGAAGTTTGGAGTGTTCACCTATGCCTCCTTCAGGACGCCCTATACCCCTGACAACCAGTACCAGATGCTGCTGGACCCCGCCAACCCCTCATCCGGCTCGGTCCGGCCGGAGAAGCATGAAAAGATCAAGTTCAACTTCGACATGACTGCATCTCCCAATATGCCCTTGTCCAGGAGCATGCTGTCAGGAGGGGGCGGGGGCATGGGCGGGGTTGGCGGGAGTACAGGCCGGAGGATCTCCCTGACAGATATGCCCCGCTCGCCCATGAGCACTAACTCCTCTGGTCACACAGGCTCTGATGGAGAGCAGGAGACACCAGACAAGGGCCAGGCTAGAGCCCCTGCTAGCCACTACAGTGCTGGGGAGGAGTCCATGGACTGCACAGCATCACCGGCTTCCACTCGACCTGATCCTGTCTCTGGTGCCAAGGACAGCCCTAAACCATTCCACACCCAGGGCCCTGCCCTGACTCTTGTTCCCAAGCAGGAGAAAGCAACACCCACAGGGAGCATCCTTAATCTCAACCTGGACCGAAGCAAAGCCGAGATGGACCTAAAGGAGTTGAGTGAGActgtgcagcagcagcagcagcaacagcaggggGTGCCACCAGTCCTCACCTCACCCAAAAGACAGATCAGGAGCCGCTTCCAGCTCAACCTGGACAGAACCATCAAGAGCTGCAAGGCCCAGCTGGGTATAGATGAGATCTCTGAGGACGTGTATAAGGGAGTGGAACACAGCGACTCCGAGGACTCTGATAAATCAGATTCGAGTGACAGTGAGTACGCCAGCGATGAGGAACAGAAACCTAAAGGGGGCCAGCACACTGAGGCCAATGACAAGGGCGAGAAGGACACTTCCAAGAGGGGGTCCAAAGACCCCCTGCCCCCCATCCAAAACAAGGAGGGCAAAACAGAGGGGCCAGGGCCAGCAACTGCAACGGCAACCATGGGAGATGCAGGGGTACCATCTACCCTCTCTGAATCCTTGTCAAAAGAGAAGCAGGGTGTAGTGTCAGACAAAGAGCCCCCAGAGAAAGCCAAAGCAGTCCCTGCATCCCTAGCCCCCAGAGAGAAGCCCCAGGTGAAGCAGGAGGCCAGGCAGACCTCTCTGGTGGATGACTCCGACTCTGAGAGGGAGCTGGTGATTGACCTGGGGGAGGACCAGGGGGGCAGAGACCGGAAGAGGACTAGGAAAGATGCACACGCATCCAAAGATCCACCAACCAATaagacagaggGTAAAGCCCCCACCCTGTCAAGTGCCCTTACTCCATCTCAAAACAACACAGCCCCTTCCTTAACCCCCAGTGTGAAAGATTCATCACAGTCTCCACTAGCCATCCCTCTAAACATGGTGCCCTTCACTACTGCTGCTCCCACCACCATTGGCCCGACCACCCTGGCCAGTGCCACATCAACAGCCCCCATCACAGCCTCCTCCGCCACCACAGCAGTAAAGAAACAGCGCCCTCTGCTGCCCAGGGAGACTGTCCCGGTGGTGCAGCGGGCAGTGGTGTGGAACCCCACCAACAAGTTCCAGACGTCCTCCCAGAAGTGGCACATGCAGAAGGTGCAGCGGCAGCAGCAGAATCCGCAGCCAGATACGCCTCAGCTGCAGACAGCATCACCTGACCAGCCACAGACACAAAAATTGCCCCAAACGCCGGCCTCTGCAACATCTTCATCATCATTATCGCCAGAGCAACCTTCCCAAAGCACGCGGTACCAGACCAGGCAATCTGTCAAAGCTGTCCAGCAGAAAGACCCCCCACTCAGTACGTCCACGTCGGCTGTTACCCTGGTGACCAGTATCCCAGCCTCTGTGGCCATGATGGCAGCTCCCGGAGTAGGCAATGGCCCCTCCACCTCCATGGCAGGGGACTTCCAGATCCCTACCGCATCAGCAGACGTAGCAGCTGACATCGCCAAGTACACTAATAAAATAGTGGATGCAATCAAAGGGACGATGACTGAGCTGTACACCGAGCTTTCCAAAAGCACTTCAGGGAACACAATAGCAGAGATTAGACGATTGAGAATTGAAATAGAAAAACTGCAGTGGCTTCATCAACAGGAGCTGTCAGAAATGAAGCACAATCTAGAGTTAACCATGGCTGAGATGAGGCAGAGTCTGGAGCAGGAGAGGGAGCGTCTGATGGCGGAGGTAAAGAAGCAGACAGAAGTGGAGAAACAGCAGGTGGTGGATGAGACCAAAAAGAAACAGTGGTGTGCCAACTGCAGGAAGGAAGCCATCTTCTACTGTTGCTGGAACACCAGCTACTGTGACTACCCCTGCCAGCAAGCCCACTGGCCAGAACACATGAAGTCCTGCACACaatcagCGACAGCCTCACAGCAAGAGCCTGAGTCAGGGTCCACGGCAGATGGCCCAAACAAAGCCTCCGGACAGTCCAACAGTGGTCAAACTTCTCCCAGAGGAACGACAGCATCTGCCCCCACAGACAAAGACTCTAACATGGAGAAAAGCAAGGACAATGTCACTGTCAGTCTGTCCTAACACTGAGCCCTTGCCATGGCATTGAGTTATCACACTTGAACCTGTAACATAAAATACCGACACCTTCTTAGCTACTGTACATGGACATGTTTCGTTAGCATTAGTCTTTTCAAGCTGCTGCTCTGAAGGTAtcaaaatacttttttattttaagtGATCATGACCAGAATTTCATCTTTCCCAAACGCTATAATCATCCTTCTCCATCTCAAGTTCAGATGTACTTTATGCCCAAAGTACTATGGGACAAGTAACCACTAGAGAGCGCCACCTGTTCTCTTAATCACTGTCACCTTGCATTATACACACTTTGCAAGCTCATAGAGAAGCAGCTTTTCATGGCCAAATTTGTGTGAGGCAGATGTACAGAAAGTGTATCTATTGTTATACGTAATATTCATAAAACTGTATTGGGAGTACATAATACGTTTTGGTACTGTGTGAAATAATTGGACAGTTTGGTCAATGATCACCCAGATGACCAAATTGAATGTGAATGGACCAGAATGGAACATGGCTTCAGATTGTTGATACAAATTATTTTCAACCGCCTTCTTGTATGTTAATTTATTCATTATTTATGCTGAAATGGTTGCCTACATTTTTATTGAGGAGATAATGTTTGATGGACTGCCTGTTGAATTAAGATTTGGTACAGAGATAGTTATATGAAGCTTTTCCATTTCAGAATGTTTTTCCCTTTCCTCCCTTAGGACTAACGCTCATCATAATGCAACCGACATTTGTCCTGTATTCATATTTCTGTGTTCATACTCTTTCATCTTGTATTGTTGTCACTGAGAAATAAACCATATTTATGGCAAACACAGGCCCTGAGAGCGAACAGAATACAACACTAGTTTTTGAAAGCTCTTGCATTTTCTACGTGTCTCCCACATGATGATacaaaaacataaatgtatttggTTGAAAATGATCGGCTACGGTGAACTGACCACGTCTTTGTATGTCAGGTTTGAACACTCTACTACAATTTATTCACTCATCTGCAGGAAACCCCATTTGATTTTCAAACTATTCTCCTACAGCACACTGTAATGGAGTCATTCCTCCCTGCCACGGTATAGAGAAGAGACTAAAGGAACTCTGTTGTATTTCATGTTTGTTTACATTCTCTAAATAAATAAAGTGTGTTGTTCTAAAACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700815 lncRNA upstream 52695 48074592 ~ 48075265 (+) True G615800
TU700802 lncRNA upstream 63554 48064056 ~ 48064406 (+) True G615787
TU700799 lncRNA upstream 69609 48058142 ~ 48058351 (+) True G615784
TU700789 lncRNA upstream 77992 48049753 ~ 48049968 (+) True G615774
TU700786 lncRNA upstream 81621 48046041 ~ 48046339 (+) True G615771
TU700862 lncRNA downstream 1966 48170170 ~ 48170384 (+) True G615843
TU700867 lncRNA downstream 9164 48177368 ~ 48177570 (+) True G615848
TU700874 lncRNA downstream 14892 48183096 ~ 48183295 (+) True G615855
TU700886 lncRNA downstream 28578 48196782 ~ 48197111 (+) True LOC110510677
TU700895 lncRNA downstream 51523 48219727 ~ 48220376 (+) True G615875
XM_021609534.2 mRNA upstream 59764 48066923 ~ 48068196 (+) True LOC110527919
XR_005052708.1 mRNA upstream 105785 48021489 ~ 48022175 (+) False LOC118965382
XR_005052709.1 mRNA upstream 105785 48021489 ~ 48022175 (+) True LOC118965382
LOC110527911 mRNA upstream 353742 47755267 ~ 47774218 (+) True LOC110527911
XM_021609516.2 mRNA upstream 412671 47711530 ~ 47715289 (+) True LOC110527910
XM_036983416.1 mRNA downstream 28579 48196783 ~ 48214546 (+) False LOC110510677
XM_036983415.1 mRNA downstream 29618 48197822 ~ 48214546 (+) False LOC110510677
XM_036983414.1 mRNA downstream 41334 48209538 ~ 48214546 (+) False LOC110510677
XM_036983413.1 mRNA downstream 41335 48209539 ~ 48214546 (+) False LOC110510677
XM_021609552.2 mRNA downstream 109477 48277681 ~ 48282177 (+) True LOC110527924
TU700614 other upstream 288238 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 1490006 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 1848627 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 4099732 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 4121053 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU702226 other downstream 658623 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 1404116 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 1418666 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 2135226 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 2792290 50960494 ~ 51074007 (+) True LOC110527970

Expression Profile