RNA id: XM_036983414.1


Basic Information

Item Value
RNA id XM_036983414.1
length 2005
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110510677
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48196782 ~ 48214546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAAGTCTCGCCAGTGTTTCGATTTACGTTGAGTATAGAACATAGTGACAGGAAGAAACGAAAGTGAAATTATGAACATATTATTCGAATCCGAATGCAAGATATCGTGGTGGCTCTCGTCATTTAGTTAGTGATAAAACGAATATTTGTTACCTTGGAACATTTTGTATAGGCTACGGCGGAGTCCTACATCATTATCTTGTGCGCCGCTCCGGAGTTAGTGGGCTTCGAATGATAATTGGAACAGGTCTGCGAGCAGCGCTGAAATCGTCTACTAAATTGAGACGACACATGTCTAGGATGTTTCCCGGGATTGAACGGTTTAGGCACAAACGCACTTTATTACTGGTTCCAGTTCTCGCCTACATGGGCCTGCGCTGGAAGTCGCTCATACCAACTTGTTGGCCTTGGCTGGAACGCATCTGGAGATTTATCATGCCAAATGATCCTAGTCCGAATTCCCTTCCCAGAGATGAAGTGGAGAGTCAAGACTCTCAAGTAAGTGTAGTAGTGGAGCCTGAATCCTTTCCCAGTGGAAAAGTGGAGGTTCCGGTTCTCAGGTCATTTTATATTGAAGACACCGATGAATACTCCTGCATGTACGACTCGACATGGGAGGATCATCCAAGCGAAGAAACAAGTGAAAGAAGGACCAAACATGGGCAAGAATCAAATTTGTACTTTGGCGGGCAACAACAAGATGAAATGCCTAATTTACAGTTCTACCGTGGACAAATACCCTCCTCCCCTGATGGTGTCTTCATTGAGGACTTTCACAATAAATGGCACAGGAAATATTCAAAACTGGAAGAAGTTCACTCATACATCCAATGGTTGTTCCCACTTCAAGAACCAGGAATGAATTATCAAGCCAAGGAACTCACCAAGAAGGAAATTGAGGCTTTCCTTGAAGATGGCACAGCAAAGCAGAGGCTGGTTGCATCCTACAAGCTCATGCTGGACTTCTACGGCATAGAGCTGTCAAATGACATAACAGGGGAAGTGAAACGGGCGAACAACTGGCGTGAGAGATTTGACAACCTGGAAACaaacacacacaacaacctgCGCATCACCCGCATCTTGAAGTGCCTGGGCACTCTGGGGTTCCCCCACTACCAGGCCCCACTGGTCCGCTTCTTCCTAGAGCAGACTCTTGTCAAAGACAAGCTGTACAATGTGAAGGAAAGTGCCCTGAACTACTTCATCTTCGCTGTCATTGATAAGCAAGAGCGCAGGAATTTAGTTAAGTATGCCTACGCACACTATGAGCCCAAACATGAGTTTGTGTGGTGCCCCAAGACAATCCAGAGTATATTCAGGGGAGAGACATTCCCAGATGATAATAACCCAATTGATCTGAAACAGGATGACATTGACAACACTGCCAGTTATCGGCAAATCGATACTGCGCAATCCAGTTATGAAGCTTCTGATAGAGGTAGCTCTATAACTACCCCCAACACTAGTCAACACCCCACCATCGATTCTCTGAAGCAATCAGATTATCAAACTAGCAGTGGCCATCCAGAGGGAAATACTGATAATTGGAGAAAGAGAGCTGCAGATAAGCCAACAGAGCATGAACTTCCCAAACGTATCAACATTTCAGAGGGAACGACTAACGCTGATCATGATGAAAGAAAAAATAAGGGAGCAGATCAATGATGTTTCAGAGGGAATGACTAACACCAATGGTCATGAGAGTACAGATGAGCAAccagagagggacaggggagatTTAGAGGAAAACAGACAGCAAAGATGAAAATGATGGTGATGGGGAGAATAAGGGAGCGAACCATGCACTGACGTTTCAGAGGGCCATATTAGCACATCCCGTGATAGTTAATTGAATAAGAAACCTACCGAAGAGGTACTGCTGAGCCCAGCAAAGGAAAATGAAGAGAAGATGCCAAAAGGAAATATTCAGTGTTTGACGTAAAAGTGACGATTGATTAGAGTATTCAACCATGTCATGCACTAATAAAGGAACATTATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700886 lncRNA upstream 12427 48196782 ~ 48197111 (+) True LOC110510677
TU700874 lncRNA upstream 26243 48183096 ~ 48183295 (+) True G615855
TU700867 lncRNA upstream 31968 48177368 ~ 48177570 (+) True G615848
TU700862 lncRNA upstream 39154 48170170 ~ 48170384 (+) True G615843
TU700807 lncRNA upstream 46825 48134319 ~ 48162713 (+) True G615792
TU700895 lncRNA downstream 5181 48219727 ~ 48220376 (+) True G615875
TU701613 lncRNA downstream 166576 48381122 ~ 48381358 (+) True G616533
TU701625 lncRNA downstream 176351 48390897 ~ 48391124 (+) True G616545
TU701630 lncRNA downstream 180945 48395491 ~ 48395723 (+) True G616550
TU701640 lncRNA downstream 185695 48400241 ~ 48400505 (+) True G616560
XM_036983395.1 mRNA upstream 41334 48127960 ~ 48168204 (+) False LOC110527921
XM_021609552.2 mRNA downstream 63135 48277681 ~ 48282177 (+) True LOC110527924
XM_021609553.2 mRNA downstream 256141 48470687 ~ 48714043 (+) False LOC110527925
XM_036983417.1 mRNA downstream 256141 48470687 ~ 48714043 (+) False LOC110527925
XM_036983419.1 mRNA downstream 256141 48470687 ~ 48714043 (+) False LOC110527925
XM_036983418.1 mRNA downstream 256142 48470688 ~ 48712407 (+) False LOC110527925
TU700614 other upstream 369816 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 1571584 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 1930205 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 4181310 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 4202631 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU702226 other downstream 612281 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 1357774 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 1372324 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 2088884 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 2745948 50960494 ~ 51074007 (+) True LOC110527970

Expression Profile