RNA id: XM_021609549.2


Basic Information

Item Value
RNA id XM_021609549.2
length 9177
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC110527922
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48214927 ~ 48243655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAATTAGTTAACTATATGTTCGTAAATGATTTAGCTTTAAACGATaccttgtttgtgtgtgcattaaTAACGCATGTTGTGTTGTGGCACGAGTTAATGTTGAGGTCACTGTGGTGATAGTTAGCTAATCCCAGCAAATGTCTAACGTTAACGTTAGGTTAATTTACCGTGTGACTGACTAGTTGCGCCATCCAACACGAGTCTCGTCGTTAGCTAGCATGGTAGCATGCCGTTTGATTTACCCACCGCGACCTAGCTATAGTAGCTCGCAATCTATGGTGTCGGAGTTCTCAGTGCACGCAGACTCCTTGCGACGTATTGGCGTTTCTTCCGTGTGGCAGCCACATTACGACGGTCAGGATTCTGTGCGGCCTGAAGAGCTATCCGGCATCTAGTTAGCACAGTCGGGATGAAATGACGTTAGGAATGATCAGAAGGCCTGAAGTTACCACTGCCTTTTGTTTGCGCCCCATCTATTGGTCCAAGATCCCACTACCAGGCCTGTGATGATTACTGATCAGAACCTGCTGTGTGCGGAATCTGAAATCATCAGATAAGCCCTCGGTCAGTGTCCCACCACTACAGATCAGCAGATATTCTGTTTGAAAGTAGTGAGTGACTCCATCTATGGAGGAGAATGTGAGTCCTGAGCTCTCTCTAGCTCCTGAGCCAGAGCAGAGCCAGGACCCTATGGATAGCAGCTCTCAAGCTATTCTTGAGGACTATAAAGCCGAGAAGGAGGACGGAGAAGATAAAGACCAAGAGCATGGTAACAATGATACGGAGGAAAAGCTAGAGAACGCAGAGCAATCTGCTAAGACCACAAACGAGTTCAAGAAAACCTGGGGATTCCGACGGACCACCATAGCCAAGAGAGAAATGCCCGGAGACACTGCTGCTGAGAGCCAGGATGGCCATGCAGGGCCTGTACGTCGCAGTGGAAGGCAGGCAAAACGCACTGACAAGCTGGAGGAGTTCCTGCTCACCACCAAGAGAACGCGcacagtagggaggaggagtgCACCTGGCAGCATAGAGGCTGGGGATCCTCCCTCACAGACCCCTACAGATGCAGAGACGGCCTCCGAGGCCAGTTTTGACGGCAACGCAGAGGCCAAGTCTGTGGACGATAAGCCAGATTCTCCAGTGAGGAAGACGAGGAGCAGGAAGAAGACAACTCGGAAGGCTAAAGGCCGTGGCAGAAGCAGGGTTGGCTCTGTCAGTGATGATGGAAGCTCTGACAATGAGAAGTTTAGTGGCGATGCTCTCAAAGAGCTCCAGGAGGAGAAGGGTAGTGGGGATACACCCAAAGAGCTCCAGGAGGAAGAGGGTAGCGGAGATGCACCCAAAGAGCTCCAGGAAGAAGAGGGTAGCGGAGATGCACCCAAAGAGCTCCAGGAAGAGGAGGGTAGTGGAGATGCACCCAAAGAGCTTCAGGAAGAGGGGGGTAGCGGAGATGCGCCCAAAGAGCTCCAGGAAGAGGAGGGCAGCGGAGATGCATCCAAAGAGCTCCAGGAGGAGGAGAACGGTAATGGAGATGCACCCAAAGAGCCACAGCCCGAGGAGAAGGAGCAGCAGGACAATAAGACAACCAGccctgaggaggaagagaaggatgacACAGTGCCGCCAGAGCAGGACTCTGTgaagaaagaaaaagaggaagAGCAGGAGAAGGAAAAAAAGGGGTGCGTGGAGAAGCCCATAGACGCCAGTGGCGAGCGTGCCTCCAGGTCCAGGAGTCCTGCTAAGGCAGCTAGTAGGGGAACCAcccacaacaagagagacaccaagTCCAGGGGAGGGATAAAGACCCGCAATGACCAGGAGGAAGATGAATCCCCATCGTCATCCTCGTCATCCAGTGACTCCGGCGACGATGAAGGATACGACCCTAATGCACTGTACTGCATCTGTCGACAGAAACACAACAAAAGGTTCATGATCTGCTGCGACCGCTGTGAGGAGTGGTTCCATGGAGACTGTGTGGGCATCACTGAGGCTCGTGGACGTCTGATGGAGAGGAACGGGGAGGACTACGTCTGCCCCAACTGCACCACCAAGAAGAGTCAGACGGCCAAGCCCAATGGCAAACCCAAAGCAGCTGCCCCCGGGGCCCTCAAGGCCGAGCAGAGCCCCTCTGTGGCGGCTCCCTCAGCTGGGATGGAAGAAAGGGGTGACGACTTGGGGATCAAAGGGAGGATAGAGAAGACCACCAACCCCAGTGGGAAAAAGAAGATCAAGATCTTTCAGGCGGCGGCAGAGGAGTCTAAGCTGCCCAAATGCATCGGGCCAGGCTGTGAGAAGACCGCCCTGAAGGACTCTGTCTACTGCGGCAGCGAGTGCATCCTGAGACACGCCGCCGCAGCCATGGCAGCCAAGTCAATTTCTGAACCCAAGCAGAAAGATCAAGACAAGGCTAAGGGACAGAAAAAAACACCTGGTGCCAGGGCAACGACCAAGAAGAGTTCCACCACCGGAAGGAAGACCAGCAAGAGGTCCACAGAGGAGTCGTCGTCTGACAGTGAGGATGACAAGAAGGATGGTGATGAAGAGCAGAATGCAGAGCAGCagccaccaccacccaccatgtCGTCCTGGTCCAGCGACCATAATTACAATGCAGTAACGCCAGAAAAGACTACACCCATAGCACCACcaacagtgttaaacaaaacgTCTCTTGTAGAGAAGGGGAGTGAAGAGGACCAGAGTGAGAAGGAATCAACCCCTTCTGAGAAGAAGTCACCTGCTTCTACAGTGCCGCTCAAAGGAGGAAAGAAGTCCCCCAGCCCCAGATTATTAAAGACATACACCAGACGCAATAAACCAGCAACTCCAGGCAGCAGTGCTAAGGCACCAAAGAAACAACCACCTCCCCCTCCTAACAAAACCAAATCCAAGAAACCACATCCACCGCCTGCTGTCCTGACCCCTTCTGCCCCAGGTTCTTTAGATGCCCCACGACATCACGTCACAGGAGCCCTGAGGGTTGGCAAGTCCAGCTTTACCATCCCCAAGAAGCAGGCCCAGCCCCAGCAAAGGGACTCCTCAGGTCGTAGTCCGTCCAGAGTCGCATCCTCAGCCCCTTCCACCCGACACCATGAGCCAGGCGCTTCTGCACCTTCCATGATGTGCCCGACAGCTCCGCCCAACAACCAGATGAGACAGAACATCCGCCGCTCGCTCACAGACATCCTCTACAAGAGGGTGAGTGACAGTGATGATTTGAACATGTCTGAGAACGACGTGGGAAAACTGGCGGTCAGCATTGAGAAGGAGATGTTCAACCTGTGCCTTTGCACAGACAGCAAGTACAAGAACAAGTACAGATCCCTCATGTTTAACCTGAAGGACCCCAAAAACAAGGGCCTGTTCTACCGCGTGGTCTGGGGAGAGGTCAGTCCCTTCAGGCTGGTGAGGCTGAGTGCAGATGAGCTACTCTCCAAAGAGATCTCAGAGTGGAGGAAGCCTGACACCACTGAGGCTCCCAGTGCTAGATCCCAGACAGGGCAGTCCAAATCGGGCCGTAGGCTTGATTCTGGCCCCCTTGATGTGGACATGGAGGACGCTCCTCCAATGTCTGATGGAGACGTATGTAACTCTGGCACCTCTCCATCTCCTCGCATGGCTTTTTCTGCAGAACTAGAGGAAGCTATCTCCGCTCCCTCTTCTGGCTCTGTTCAGGTGGGGGTGAAAAGTGGCAGTTCCCTACCAGACATCTTCAGCATGATGCGGGACACCACAGCCGAACACAgggcccacctctttgacctcaaCTGCAAAATCTGCACAGGCCAGAAGTCTGCAGACGATGAACCAGCCGCCAAGAAGGCCAAACTCTCCAAGAAGCCTGAAATGAGGCAAGAGGTGAGGCGCTTGTCCAGGTCCTCCTCAGGTGAAGGTGCCCCGGTCTCTTATCCCGGCAGTGAGACGCCAGTCCCTGAGCCCTTGCCCTACCAGGAGGACACAAGCATCCATTTTCCTCCGTCCCAGACCCCAGCCCCTATCACCGCACCAGCCGTCTCCTCTGTCAGCATCACCCGCAGAGATCCCCGCATGGCAAGACACAGCTCTGGAGTGACGGTCACCCACTCTGCCCCAGACGCATCCATGGTAGCATCCATCTCAACAGATACCTATTCAAGACCCATTCCAACAGAGTCCTATTCAAGACCTATCCCAGCAGATACTTATTCAAGACCAGCCGTCTCAGTAGAGCCCGCTCCTGTTGCAGTGATGGAGGTGGTGCCCAAGGGGCCTCTGCCCATGCCCCCGGCTCCTCCACCTTCCATCCCCAGGCCCATCGTGCAGAAAGCTGCCTCGTCAGAGACTCCTCCAGAGGGCGAGACCGCCATCTTCCTCCATGGCCAGGAGATGATGTGGAAAGGATTAGTCAACATGCACACCGTGGCCAAGTTTGTCACTAAAGCATACCTAGTCTCAGGATCCTTTGAGCACCTGAAAGAGGATCTGCCTGACACCATCCACATTGGAGGCCGAATCTCTCCCAGCACTGTGTGGGACTATGTGGGAAAACTGAAGACATCTCTGTCCAAGGACCTGTGTCTGATCCGGTTCCATCCAgccacagaggaagaggaggttgcctacgtctctctcttctcttattTCAGCAGTAGGAAGCGTTTTGGAGTGGTCGCCAACAACAACCGCCGGATCAAAGACCTGTACCTCATCCCCCTGAGCTCCAAGGACCCCCTGCCCTCCAAACTGTTACCTTTTGATGGGCCAGGACTTGAACCAGCGCGCCCTAACCTCCTGCTTGGGTTGGTGATTTGCCAGAAGGACAAGAAGCGTGCTGGAGCCTCTTTGGAGACTGAGGAGAAGCGTTCCAAGATCCAAATCAGAGACCTAGATGATACTGGCCTTCCAAAACCAACCACCACCATCAAAGCTGAAGTCAAAGCTGAGAAAGCCTTGCGGTACACCCAGGATCTTCCCTTTCGCACAACCCCCCCAGGTACACCTCCCCCTCTCAGCTCCTCAGAGACCTCCTCCACATCCATGGCAGCCTTATCAGTGCTGTCATTCCTGTCCTCTGTCAAAGCCCCTGCTACAGACAAAGAGTCACCTGCCTCAAGCTCTGCTGCATCATCTGCTGCCAATGCCACTCCCCTTCAGACCATCCTGAAGACTTTGTTTGGGAACAAGAGGCAAGACTCTGAGGCCTCCATGTCTCCCTCAGAGCATGGTGCTGTTGACATCTCAGCCGTGCCTGCTACTCTGCTAGATCCCATTGTTCAGCAATTTGGACAGATTTCTAAGGAGAAGCAGGTGGAGGAAGATGAGGATGACAGACCATATGACCCAGAGGAGGAATATGACCCAGGCATGGGCTATGGAGCACCCCAGAAGTCAGTTAAAGAACCTGAGGTCATCAAGCAGCCAGAGGCTACAGATGTGGATGATGTGGCTTATGACCCAGAGGATGACACCATCTTTGAGGAGGTCAAGACTGAGGGCCCTGGTCAAGCCAAGGCCACCGGGGATCTGACCAAACAGCAGAAAATGGTGGATCTCAACAAACAGATTGAGGAGCAGAAACAGCAGCTGGAGGAGCAGGAAGATTCCATCCACGAAAAAAAGTTGACCACAGGGACATCAGCTGCCTCGTTCTCAGTCACAGACGGTTTGATCTCACCATCCCTACTGGCCAACAGTCGGCTCCTGCAGCTGGGCAAAAAAGTTGAAGAGTTTGTGAAATTTTCTTCTGCTGCTCCTTTGATTAACCAGAGAAGGGACCCAAGGCAGAGTAGGGATCCCAGGAGGCTAACCTCAGACTCAATAGAAAAAGTGGAGATGCCTCCTGCCAAAGACACCACGccaccaccacagactgatgtcCAAGAACCAGAAACACCACTGCCCCAAGAAGAGGTTATAACAGATTCTCTTCCCTTTCTGGAATCAGACGCAACAGAGGTTTCCATTCCCCTCTTAGGTGAGCATGTAGAACCTGCTACGGAGGTCAATTACATGGAGGAACAAACTGTTGAATCTGAGGAAGTCGACCCAACCAAGAGTGACTTGGACAAATACAGTATTTGGCCAAATGCAGACAGCATTTTAAAAACAGGGGAGATTTCTAGTTTTGAGAAGAACCGTCAAGAGCCTACCTCCTCTGGCTACTTCAACATGTCCACAAACAACAACTCCTTAGCTTCACCTACAATTAATGTACTGTCTCAGAATGTCACCCAGGATAGCTCCACCCTGGTGAACACTCAATCATCCCACATGTCACATATGGGAACATCAAGCTACATGGACTACGGCGCTCCTCCTGACATTCTCCCAACAACCACGTTCCCACCCCAGCTTGTACCACCACCAATGCAGGGTCCACCCCCAATGCTTGGGCCACCACCCATGTCAGTTCCCCCACCCATGCAGAGTATTCCTTCCTTGTCAGGCCCTCTACCTATGCAGAGACCTCCTCCACCCATTCAAGTTCCTCCACCCATGCAAGTGGAGAGCAACCAGTCTCCGTACTCCCAATATGGGCCGCCTCCTGCTGCTTATCCTCCCTATCAGAACCAATGGGGAGGCTCTCAGCAGCAGTATGAGGCCCCCCCTGGTcctccaccccagaccatgatgccACCCAGGGGACCCCCTCCATTCCAGCCGATGGGCCCGAGAGCCCCACCTCCCCAAATGTTCAATGCCCCCATGGGCTCCATGCCTCCCCAGCACATGGGGCAGCAAGGCCCCCCTCCAGGCCAGTTCATGGAGGGCCATGGCCTGCCCAGACCTAATTTTGACGGGCAAAACGGTTTAGCTCCACCAAGGATCAGTGGACTCCCTCCTCCATTCAACTTCCCTGGACCCAGAGCACCCCCTCCACCCTTCACAGGGCCTCCCCCAGGCCACTTTGACAACAGAGGACCTCCTCCATCCCACTTCCCTGGGCCCAGAGGTCCACCTTCTCATTTTGGGGATCATGGGTCCCAAGCCCACATGATTGACCCACCAAGAGGCCCTGTAGATCAGTACAACAATGTCAGTGTTGGGTCCTACCAGCAGGGCATGGACCATCACCAGGGTCAGACCCCTCCACACATGTACAAAGACAACCAGGCTCCCCCACAAGGCCCCTCTTACAGAGGACCTCCACACAACCAGTATGAGGGGCGGAGAGGCCCGCCTCCCAGTGGAGATATGGGTGGACAGCGCTTCCAGCCACCTAACCAGTTTCGGGGATCTATAGcaccctccccaccaccacacagggGGTCTTATGATGACCAGGGACCCCCTCAGGACCACCGTGGGGCCCCACCACAGCATTTTGGAGGACCTGACCAGTATCGCCTTGACAGTCCAGGGGACTTGAGACCAGTTCGGCACAGTGGGCCTCTGCTCCCGACCCCACCAGAGGGCCCCATACCTCTACCAAACCGCATGGGGGgtcacagcccagagtcccacagggATGACCACTGGCGACGACACTCGCCTGATATGAGGAGAAGGAGCAGCTCCACCAGAGAGGGCTCAGAACCTTGCGGTGGAGACAGGCCCAGTCGGTTTGAGGGGGGCCACAGAGACCGGGAGCCAATCCCTGGCTCCTCTCAGTTGTCTGAGGAAAGGCAAAGGGACCTGTCTGAGGACCGCAGGAGGGAGCGGGACAGAGAGGGGCCCCATGGAGCCAGGCCATGGGACAGGGGCCAGGACAAGCCCTGGAGccgggagagagagtgggacagaggcagggagagagacaggggcgaGAGGGAACGAAGCCGGGAGAGGGAGcgcagcagagggagggagggagagcgacatGGGGAACCCGAGGGTGACAAACGCAGGGAACCCGAGGGTGACAAACGCAGGGCGCCGGAGGGTGACAGACGCAGGGCGCCGGAGGGTGACAGACGCAGGGCGCCGGAGGGGGACAGACGCAGGGCGCCGGAGGGGGACAGACACAGGGCGCCGGAGGGGGACAGACACAGGGCGCCGGAGGGGGACAGACACAGGGCGCCGGAGGGGGACAGACACAGGGCGCCGGAGGGGGACAGACACAGGGCGCCGGAGGGGGACAGACACAGGGCGCCGGAGGGGGACAAGagaaaggacagggagagagaccgagacaggggcagagagaaagagcctGACAGGGGCAGGGAGAAAGAGCCTGACAGGAGAGACTACGACCGAGACAGACCCAGGAtcagagaccgggagagagaccGCGACAGGAGAAGGGACAGGTCCAGGAGCAGAGACCGGGACAGAGGCAAGGAAAGAGAGTCTGACAGGAGAGACAACGACCGAGACAGAGCACGAGaccgagatagagagagggataaagaccGGGACCGGCACGACAGGAGCAAGAgcaaagaaaagagagaagacaaaaaagaaacaaacaaatCTGATGTCCCAAAGGAGAGCGATAAACCTGCAGAGGTTGAAACTGATAAAAACACATCGTAATGTCTTACTTTTGAGGACAATTCACTGTACTAAATCAATCACCCTGTAACTTTTACTTTCAGCACCATAACTAAATGTAAATAGACATTGGGAATGTGTTTCTACATGACAAATGATTTCATGGTACAATACTCTTGTAGTTCGAAAGGTCGGACCATTTTTTGCCACTTCATATTTTATGAATGTTATCACATTTGAAACTAATATTGAGGTCATTTAAGTTCATCTGACTATGATACCAGGTCATTTAAGTTCATCTGACTATGATACCATGTCATTTACATACAAGTACCTTTCTCCTGTCAAAGTACCTTTTCTAAGAAACACATGAAAGTAACTGATTAACTCCCTGACCTTTAATGTAAATATGAATGTATTTGTGTATATACCGGTATGTTTTTAATCACATTTTTCTAAGTAGAGAAATTATAAGCCATATATCTGGAATGGATAATGTGAGAATTTAGGAAACATTGATTGCTATAGTCTGAAGTCATTGGACAGTATGTGCTATATGTTCAGCAGTTACCACTGAATGGATGTACCTATAGTATTGCTAATTACAGTTGACATTAATTTTGTTTAAACTTGGCCAATTAAACCTTCTTTATGGCAATCTGTCATTAATGGGTTCTGTCTTTCCATTACATCTGACTTTAAAAAATGTCATGTTCAACGACTGTAATAAACACCACAGACTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701525 lncRNA downstream 8387 48206252 ~ 48206540 (-) True G616447
TU701520 lncRNA downstream 8923 48205659 ~ 48206004 (-) True G616446
TU701515 lncRNA downstream 27707 48186889 ~ 48187220 (-) True G616442
TU701513 lncRNA downstream 28685 48186039 ~ 48186242 (-) True G616440
TU701472 lncRNA downstream 83463 48131101 ~ 48131464 (-) True G616402
TU701623 lncRNA upstream 148055 48389889 ~ 48390160 (-) True G616543
TU701631 lncRNA upstream 152901 48394735 ~ 48394959 (-) True G616551
TU701644 lncRNA upstream 159815 48401649 ~ 48401916 (-) True G616564
TU701645 lncRNA upstream 160169 48402003 ~ 48402336 (-) True G616565
TU701684 lncRNA upstream 182223 48424057 ~ 48424287 (-) True G616604
XM_021609537.2 mRNA downstream 96842 48074448 ~ 48118085 (-) True LOC110527920
XM_021609539.2 mRNA downstream 96849 48074448 ~ 48118078 (-) False LOC110527920
XM_021609535.2 mRNA downstream 96850 48074448 ~ 48118077 (-) False LOC110527920
XM_021609540.2 mRNA downstream 96850 48074448 ~ 48118077 (-) False LOC110527920
XM_021609538.2 mRNA downstream 115308 48074448 ~ 48099619 (-) False LOC110527920
XR_005052593.1 mRNA upstream 485535 48727369 ~ 48729185 (-) False LOC110527927
XM_021609557.2 mRNA upstream 485535 48727369 ~ 48736334 (-) False LOC110527927
XM_021609558.2 mRNA upstream 505662 48747496 ~ 48771717 (-) False LOC110527928
XM_021609560.2 mRNA upstream 505662 48747496 ~ 48771717 (-) False LOC110527928
XM_021609559.2 mRNA upstream 505662 48747496 ~ 48771720 (-) False LOC110527928
TU700211 other downstream 944856 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 2339227 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3729175 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3729522 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4634963 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 245213 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 942590 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 942590 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 953770 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1053421 49295255 ~ 49297248 (-) True mustn1b

Expression Profile