RNA id: XM_021609557.2


Basic Information

Item Value
RNA id XM_021609557.2
length 1876
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110527927
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48727369 ~ 48736334 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGGTGACGTTCCAACCCAGTCGCTCATTCATTTTGGACAGTCTATGTATTTTGCGCATGCGCGCGTCACTTTCGACGTTCCAAAGCTCACTGTAGTGTGATAATGGCGGCAGGCTCCGATCTGCTGGACGAGAAAGTAGTTTGTGATCTTGTGGGGTCTTTTGAGTCCGAGCTCAGGTCACGGGAACCCAGACAGTTGCTAAACACAGTTCCGGGACAGGGGGCAGCTAATGCTAATGTCCAGCAGAGCAAACAGGGGGATCGGATATAGCGTTGAATGGGAGCACTAATACGGGATTGACTTTGGCCTTCAATGTTGCGGGTCAAGCTTTCACAATTGCGCCGGGCATGGGCATGCAAACTCCGCTATTGAACAATGGGCGGTGAGGGATTCAAGCTATCACGCCACAGGTGTTGGCCCCTAGGCTCCCCCAACCATTCCTGAATCAGCCCAACTTTCAGAACATCCAGCTCCCCCCAGgttactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgccatcaaggaaAAGGAGGGGAAAATTGAAGCCGAGGACTTCACCAGCAGGTTATGCAGAGAGCTAAACTTCTCACCTCAGCTTTACCTTGTGTCTTTCCTCAAGTCTCGATCTCGTCAGGAAGACCCTGAGCAGCTGCGGTTGAAACAGAAAGCCAAAGAGATGCAGGAGCTGTTTCAGTTGAGATCGAAGGAAGCTAACCTGATGGCACTGGCAATTGTCGGCCCCAGGAAGATGAGGGAAATGGAGGCTGCAGCCGCTGGAGCTGAGAACATGGGCTCTGGGTCATGTCCCTCTGCGTCTGGTAGAGCTAGTTCTGGAGCGTCCAGACAATTTACCCGCCAGAGCATCACTCCTGTCGACCCCAGGGACATGCTCTTCTGtctggagaatgagagagagaccagtcactCCCACTTCATCGACAGAAGCTTCCTTAAAAATACACCCCATAGAGACAGACCGGAGAGCTGTCACTCTCGCATCCACTATAGCAACTCCCTCAAATAGAGAGCCCAGACAAAAAGGTATCTACCCTAGAATTGGATAAGAGGGATGGGACAGTGATAAATGGATATCATGCTTCTCCAGGTCACAGTGAATGGATCTGACCAAAATGAATGGAACGTTTGTCTCCACTGTGTACTCTGGTTGTCCTTTTGTTCTCCATCTAGTTCTATGCCTAACTGCTCCCTCTACACTCCACCTTCCCCCAGAGCATTCCTGGGACTCTCACATGTTctaggtttttataaatgttttatttactttttttttaatttttagaatTCCGTTGTAATTAAAGTGTAAAGAAGTAAATATTTGcattatattattatacattttaCTTGGAAGGCCATTTTGTAGTTGCAAATGACAGTTGTACACATTCCAAGTCATTTTACAAGTCTGTTTATATGAAACCATGTTTTAAAGAATGAATCAGCTGTGTTTCTAATGGATGTTAAGAACAATATCTTTGTTTTGTGATAGTTATTCTATTGGCCTCTTTCTGCTTGTCTactgcagtggttcccaaccagaggtactaggacccctgggggtgcttggtctatccacagggggtacttgagacgactcatgagaccataggcctactggtcaaatgcacatgagggggtacttcaggggtacttaaggcagagcaaaattcagttggtggttcagtaaccaaaaaaggtttgGAACCACTTGTCTACTGAGTTTCCTTCCTGACAAAATAAGCCGTATATTTGTATCTGATCTTAAACAGCACCGCAGTGACTCTGACTCCTGCTGAAATCTGACGCAGTAGATTTTTGTCTCTTCAGTTTTTTGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702130 lncRNA downstream 12200 48714872 ~ 48715169 (-) True G617038
TU702129 lncRNA downstream 13346 48712468 ~ 48714023 (-) True G617037
TU701739 lncRNA downstream 258444 48468725 ~ 48468925 (-) True G616659
TU701732 lncRNA downstream 265144 48461993 ~ 48462225 (-) True G616652
TU701699 lncRNA downstream 287902 48439266 ~ 48439467 (-) True G616619
TU702113 lncRNA upstream 9992 48746326 ~ 48746892 (-) True G617021
TU702216 lncRNA upstream 78248 48814582 ~ 48814800 (-) True G617123
TU702218 lncRNA upstream 80131 48816465 ~ 48816677 (-) True G617125
TU702221 lncRNA upstream 83207 48819541 ~ 48819746 (-) True G617128
TU702673 lncRNA upstream 215361 48951695 ~ 48952329 (-) True G617507
XM_036983409.1 mRNA downstream 483714 48214927 ~ 48243655 (-) False LOC110527922
XM_036983401.1 mRNA downstream 483719 48214927 ~ 48243650 (-) False LOC110527922
XM_036983396.1 mRNA downstream 485192 48214927 ~ 48242177 (-) False LOC110527922
XM_036983405.1 mRNA downstream 485192 48214927 ~ 48242177 (-) False LOC110527922
XM_021609550.2 mRNA downstream 485193 48214927 ~ 48242176 (-) False LOC110527922
XM_021609558.2 mRNA upstream 11162 48747496 ~ 48771717 (-) False LOC110527928
XM_021609560.2 mRNA upstream 11162 48747496 ~ 48771717 (-) False LOC110527928
XM_021609559.2 mRNA upstream 11162 48747496 ~ 48771720 (-) False LOC110527928
XM_021609561.2 mRNA upstream 11162 48747496 ~ 48771720 (-) True LOC110527928
XM_021609563.2 mRNA upstream 50727 48787061 ~ 48803078 (-) False LOC100136282
TU701964 other downstream 198201 48487047 ~ 48529168 (-) True G616880
TU700211 other downstream 1457298 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 2851669 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 4241617 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 4241964 44484855 ~ 44485405 (-) False G611674
TU702802 other upstream 448090 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 448090 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 459270 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 558921 49295255 ~ 49297248 (-) True mustn1b
TU703492 other upstream 923701 49660035 ~ 49936281 (-) False LOC110527961

Expression Profile