RNA id: XM_021609560.2


Basic Information

Item Value
RNA id XM_021609560.2
length 1668
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110527928
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48747496 ~ 48771720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCATCCAAATACTTTAGTTGACTGATTGAGTACACTAAGGGAGAAGGGTCCTGTAGAAGAGAGAGCGTGTGCTTGAGAGAGCCAGTGACTTTCTTAGGAGTGCtttgactctgtctctctgtcccaggagaggaggagggcgatGAGCTGTCCTGCTAAAGCTCTGGAGGGCTGATTGTTCCCCACCTCATCGCATCTCTGTGCCTGACTGTGTGAACTGACCCTCCAGTCCTCCTCAACAGCACATCTTATCTGATTCTGCAGCTCTCTGTCCGAATCTGCGAGCACCATGAGCTCATCTGGGGCAAACCTCCACAACAAGCGTCTACCCTgtcacagttgtaaatgagaacttgttctcaactggcctaaatggtgaaataaaaaaatcccacCCTCTGCTTGGTGAAAAACAACCCCGGATTCAGACCAGCGGAGACCGAGCATGCTCAGAGGGTCCCAGCAATGGACGCAGCCCAGCAGATGAAACTGAAAGAGCGACAGCGCTTCTTTGAGGAGGTCTTTCAGCACGATGTGGATGTCTACCTGTCCTCTGCCCACTTGCAGATTCATGACTATAAGAGACCTCCCATTGGCAGTGTCTCATCCATGGAGGTTAATGTGGACATGCTGGAGCAGATGGACCTCATGGACATCTCTGACCAGGAAGCACTGGATGTCTTCCTCGGCTCTGGAGGGGATGAGGGGGTGCTGGCCTCCCCTCTGCCAGGTAAAGTAGTTCATGGAAACAACAACAACGATAAGGTAATCAACCAGGGACGCTCTCTCCACTACACTGACGGTTGTGATGGGAAGTTCCGCGtggcctccacctcctccaccaacAGCCAGAACACCAATGAGGACGGACGGGACACCCAAGTCATCCAATCAGATGATGAAGATGTGCATGTCGACACCGTCTTGCTGATGGGATCACCCCCAGGGAAAGATGAGGAGAAGAATCGGTCTATCCTCTCTTCCTAGGCGCCTTCCTTCACTTCCAATATTCAGTAACATTTTGGACTTACTGATGCTTACAAGTATCACTtaaactggacacacacacttccatggACTGGCAAGACAACTGACACTTTCCACAGCCTTTTCTTTACTGTTCATTTTGTTTTGCCTGAACTGTACATATAAAGCCAACTCTTCTCCAAGCTTGTCCCCATTTATACTTCTGGAATGTAGATGACAGGACATTCCTTTTTATTTCCTCATTTAGCATCCTATTAAGATCTGGCAATGTGTGGTACTGTTTTGGGAAGGACATTTTTGTGTGTAAGCAGGCTTTACTATACTACAGATCGGAACAACTGAGTGTTAGTAAAAAATGTAATCATCTGTATTAACCAGGTtgaaataaaggttgaataattTAGGAAATAAAGATGTAGAgaattaatattttttttgtaagaACTTTTTTTTCTTTAGAGAGAAACATATGAACTGTGCACAACTTTGCCATGCTTTGTAAATATGGCCCTTAGTTCCCATATTCCCTAAAATGTTCAACCAACCCAAAACACCTGCCACAAATGAGGACATATTGTACATAGTGCTTAGTGGTGCATTAATTTAATTTGACTTAAGGTTCATTTATTTTAACTATGAATaggaataaaaaaataacatttgtttcCTGCAAACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702113 lncRNA downstream 604 48746326 ~ 48746892 (-) True G617021
TU702133 lncRNA downstream 11269 48731430 ~ 48736227 (-) True LOC110527927
TU702134 lncRNA downstream 16660 48729826 ~ 48730836 (-) True G617042
TU702130 lncRNA downstream 32327 48714872 ~ 48715169 (-) True G617038
TU702129 lncRNA downstream 33473 48712468 ~ 48714023 (-) True G617037
TU702216 lncRNA upstream 42865 48814582 ~ 48814800 (-) True G617123
TU702218 lncRNA upstream 44748 48816465 ~ 48816677 (-) True G617125
TU702221 lncRNA upstream 47824 48819541 ~ 48819746 (-) True G617128
TU702673 lncRNA upstream 179978 48951695 ~ 48952329 (-) True G617507
TU702678 lncRNA upstream 185818 48957535 ~ 48957884 (-) True G617512
XM_021609557.2 mRNA downstream 11162 48727369 ~ 48736334 (-) False LOC110527927
XR_005052593.1 mRNA downstream 18311 48727369 ~ 48729185 (-) False LOC110527927
XM_036983409.1 mRNA downstream 503841 48214927 ~ 48243655 (-) False LOC110527922
XM_036983401.1 mRNA downstream 503846 48214927 ~ 48243650 (-) False LOC110527922
XM_036983405.1 mRNA downstream 505319 48214927 ~ 48242177 (-) False LOC110527922
XM_021609563.2 mRNA upstream 15344 48787061 ~ 48803078 (-) False LOC100136282
XM_036983421.1 mRNA upstream 15344 48787061 ~ 48803078 (-) True LOC100136282
XM_021609573.2 mRNA upstream 226047 48997764 ~ 49004832 (-) False LOC110527937
XM_036983427.1 mRNA upstream 227338 48999055 ~ 49004836 (-) True LOC110527937
XR_002474175.2 mRNA upstream 312193 49083910 ~ 49088195 (-) False LOC110527944
TU701964 other downstream 218328 48487047 ~ 48529168 (-) True G616880
TU700211 other downstream 1477425 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 2871796 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 4261744 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 4262091 44484855 ~ 44485405 (-) False G611674
TU702802 other upstream 412707 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 412707 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 423887 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 523538 49295255 ~ 49297248 (-) True mustn1b
TU703492 other upstream 888318 49660035 ~ 49936281 (-) False LOC110527961

Expression Profile