RNA id: XM_021609564.2


Basic Information

Item Value
RNA id XM_021609564.2
length 2330
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110527931
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48835194 ~ 48845739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCCCGGAACACTTTCAATATAGAGGCAACTCAAAGAATTATTTCAAGCAGTAGCCTATTCGGAAACGCAGTGAACTTGGCAACAAGAAGTTCAAGTTCTGAATCAGGAAAGAAAAAACGTAAAATTGAGAAGCAAGCGAGAACAGACCCCTGTTGCATATTTGAAAACATCTCGAGTCGAGCAGCTAATAGCCTTTTGATGCTGGACATATCAATAGTTGGTTAACCAACTAGGCTATCTTTTAGTTAACTGTTCACTAGTCTTTAGCCTAGCTCTCTTATCGGCTCGGCTTGTCAATGCTTTTGCATCAGTTCGGGAACGGAGGCCTGGAAGTGATGCATTCTACAGCAATTCAAAAAGACACTACTTTTACCAAAATTTTCGTGGGCGGTTTGCCCTACCACACTAACGATGCTTCCTTGAGAAAGTATTTTGAGGCCTTCGGAGACATCGACGAGGCGGTGGTGATAACGGACAGACAAACGGGGAAATCCAGAGGATATGGCTTTGTGACGATGACAGATCGGGGATCAGCAGAGAGGGCCTGTAAAGACCCCAACCCCATCATCGACGGGCGCAAGTCCAACGTGAACCTGGCTTACATTGGCGCCAAGCCCCGGAATATGCAACTAGGTGAGCCGACCAGGGGCATATCCATCGGCATGCAACCTATTCACCCagcgctcatccagaggcagtaTGGGTTGGCCCAGCAGTATGTGTATCCCCAAGCCTTCATCCAGCCCAGCCTGGTTCTCCCCTCTCAGGTGTCCTCCTCCGCCCCCTACCTGGACTACAGTGCTGCCTATGCCCAGTACGCCCAGGCAGCCTTTGAGCAGTACCCCTACGCTGCCTCCCCAGGGTTCCTGGGCTACGGCTACACCCCCAGCCCTGCCGCCGCCCCCTCCCAGGCCCCTGCTTCTGTTCATCAGACTCTCCCCACAGGGGCAGGCCCAGCCCCCAACTTCTTACAGTACGCCCCCCAGCAGCATGTTCAGCCAGACCGCATGCAGTGAGGAGAGGCAGGATGCAGGGAGTCCTGTAGGCCGCCAGGGGAGTCACCCTGTGCTGCCCCTGCCAGGGCTTTCAGGGAAGGGCTGGAGAAAGCGGGACTATTGCACTATATAGAATGAGCCCTCCCCTGagtttggggtgggggggttgggCTAGAATAAAATGCATGGTTGCTTCAGAGGGCTTCCAGAAACAGACACTTCATTTTTATTATTAGTCTTTATTGTATTAATACTAGTATCCTTTATCAATGTCATTATTAATTGTTTTGTTTCAATCAGTGGAAACCTTCAATGTCCATGGTACATACCTGTGTTTTGGAGAGAGCTGAGGGGGGTGGTGGGCTTACTTGGACattttccccctcccccctctttacCAGGGCATGGGGTTGGCGACGGCACTGCTGCTTGGGTACACTGGGAATTGGAACAGAGGTGGGAGGCATGACGCCAACTGTTTCCATCCACACCAGAGCAGACGAGGATTCTGCCCTCTCATACCCCCAGTGTTATTGCTCCAACACCATGGGGGGCATGACTCTGTCTTTTAGAGGTCATCACTAAATGGAGAACGAAGAGATCCTGGGATCCCCTTATTTGAGTCGATCAATCGTTAGACATCAGAACgacatttatttttatgaaaGATGCCTTAATAAAACTCCTGTTTTTACAAACACTCCTCCTTTAACCCCTTCCTTCACTCACAGAGCCACAGGAAGTTTTCACATGGCCTGACTTCATATTTATACCAGACACTTGTAGTCTATTGACTCACTTTGTCTTGATTGTTGTAGATAATCATATGCAGGAAGTGGGAGGAGGGGTCAAAGAGCATTGGGTATTTTATGTAAGGCAGCTgatgtaaccagtgcctgcataTTTTGTCGAACTGTTCATCTAGGATTGTCAAATGTTGATCTCAGAAAGGACATGTACAGTATTTGTAAGTGTTTCATTATCAAGTACATTTACaatatttatgttttgaggtATTTATAGGAAATTCTGTAGCTTTTTTGTAACTTGGTCTTGTTGCACTGAAGTCCTACAACTTGGTAAGTGTATGTGCAGATCCACAATTTGTCTTATTCATTTGATGATGGCCATATTTGTATTTTCCATGTTCCCTCTGAACCAATGGATTTGCCTGTATGCACAATGCTAGATGCTCTTTTGTAGCCCCAGTTTCACTGCTGCTGGCTGGGATCAGACACTGTAGACTGTTTCAGCAAAATGTCATTTCCAGTCCATTCAAAGAAGCCAAACCAAAAAAATCTTGGAAAAATAAAGAATTTGTATTTAAAAAGG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702223 lncRNA upstream 10883 48824051 ~ 48824312 (+) True G617130
TU702222 lncRNA upstream 13200 48821699 ~ 48821995 (+) True G617129
TU702219 lncRNA upstream 16889 48818052 ~ 48818306 (+) True G617126
TU702215 lncRNA upstream 21907 48813019 ~ 48813288 (+) True G617122
TU702212 lncRNA upstream 23566 48811358 ~ 48811629 (+) True G617119
TU702264 lncRNA downstream 92863 48938602 ~ 48945932 (+) True G617167
TU702301 lncRNA downstream 100935 48946674 ~ 48947014 (+) True G617203
TU702302 lncRNA downstream 103038 48948777 ~ 48949069 (+) True G617204
TU702312 lncRNA downstream 124822 48970561 ~ 48970767 (+) True G617214
TU702322 lncRNA downstream 155662 49001401 ~ 49001733 (+) True G617224
XM_021609555.2 mRNA upstream 94487 48737271 ~ 48740708 (+) False lsm14b
XM_021609556.2 mRNA upstream 94487 48737271 ~ 48740708 (+) True lsm14b
XM_036983419.1 mRNA upstream 121152 48470687 ~ 48714043 (+) False LOC110527925
XM_036983423.1 mRNA downstream 16086 48861825 ~ 48874455 (+) False LOC110527932
XM_036983424.1 mRNA downstream 17203 48862942 ~ 48874455 (+) False LOC110527932
XM_021609566.2 mRNA downstream 20854 48866593 ~ 48874455 (+) True LOC110527932
XM_021609571.2 mRNA downstream 39470 48885209 ~ 48896546 (+) False cidec
XM_021609569.2 mRNA downstream 42070 48887809 ~ 48896546 (+) False cidec
TU702226 other upstream 7968 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 995473 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 2197241 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 2555862 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 4806967 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU703098 other downstream 726581 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 741131 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 1457691 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 2114755 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 3545609 52391348 ~ 52391633 (+) True G621650

Expression Profile