RNA id: XM_021609573.2


Basic Information

Item Value
RNA id XM_021609573.2
length 3754
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110527937
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48997764 ~ 49004836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTAAACTCTCACTCAAGACAACACTTGACCGTAGGTGGCTTCGGCATAGGCTACACACATAGGGTCCTGCATAGAGTGTAGAGGTGTAGCAATAACATGACAATGTATTGTGCGAGGAAACACGAGCTGGTATCGTTGTTGACATGAGGGCATGCCTGACTTGTCCCTAGATGAGATCTGTGCGACAAGGACCAACCGCGCACGGAACACTTCGTCATTGATTAATGCTAATTGTTAATTCTCTGAATGCGAATACAATCATTTCCCCCATCATTATTAATGACAAGATGTCAAACAAAACATTTGGATGACTCGAACTGCGCCACGATAGGATTTCAAATAACAGGGATTTGGGCAGGTATGCGCAATTTTGATGTTCTCATTGGAATGCGCTCATTTTGGGtataaacaaaaacatgtgaTGCTGAAGCGCATCGGCACTACCGGCGAGAATAATTCGACTATTTGACTGTGTGCACGTTTGTTGTCATTGGATTGGTGATAACTCATCCAGCGGGATTCTGAGCCTGTGAAACCACTTACAGTTCGTCTTCGATTTGAGATGCTGGCGATTACCTGCGCTTTAATTTTAGCGCTCATGCAAAGCGGGACAGCCTCGAGGTGTGTAGACCATGCCTGCAGTCCTCCCATGGGCAACCTGGCCAGTGGCAGGaccctcacatccctctcagGCTGCTGTGGGAATGGGTCCCAACACTCCCCATGCCCAACTCCCCTCCACCCCTGTCCAGTTGACCTTCACCCACCTGCCCACATGGTGGATGATCCCTTCCAGCACCCAGCCACCTGGTGGGCCTCGGGCATGGGCACTGACCAGGAGGAGGAAGTCCGTCTGGACCTGGAGACTCGTTTCTGTCTGACCCACGTGGTGCTGCTGTTCCACTCACCCAGGCCCGCTGCCATGGCCATGGAGCGCTCGCAGGACTTTGGTCGGACGTGGGAGACACTCAAGCTGTTTGCGCAGAACTGCAGTCTTGCGTTTGGTCTTCCTGATGACACCGGTCAGCCTGGCTCGCTCTGTACGTCCCGGTACTCCAGTGCCAAGCCGTGCAGCAGGGGAGAGGTAATATTCCGGATTCTGGGCCCTGGTGGATTAGTTGACCCCTACAGTCCAGAGAGCCTTTCCCAGCTGACCCTCACCAACCTCCGCCTCAGACTTCTCAAGGCCCAGACCTGCCCATTATCTGTCGCACCTtccacctcttcttcctccattGGACTCTCCTACCCTCCTACAGACCTgaatccccccctcctcccttccccccagCCCAGCTCAGAGCCCCCTGCCTCAGCTCCCTTTGCCATTTACACTTTCCTGGCTCGAGGTACCTGTCTCTGTCATGGCCATTCAGAACACTGTTTACACAGTGGCGGACAGGACAAACTGAAGGACATGGTGCCTGGCAGGTGTGTGTGCACTCACCACACAGCAGGAGAACACTGTGAGAGGTGTGCCCCTCTATACAATGACCGTCCCTGGAGGGCAGCCAACGGCAGCAGTGGGGAGCCACACCCGTGCCACAAGTGTGAGTGTTACGGCCACGCGACAAGCTGTCACTTCTCCCAGAGGGCGTGGCTGTCCTCAGGGGCCACCAGTGGGGGTGTCTGTGACGAATGCCGACACAACACAGCAGGGCGCAGGTGCCAGCGCTGTCGCCACGGTTACCACCGCCACCCAGCCATGCCCCTTGGCTCCTCCCACATCTGCACACGTTGTTGGTGTGACCCACTGGGCTCATTACCAGCCAGCTCTGGGGAGGAGTGCCCATGGTGCCACCCCAGGAGTGGACAGTGCCACTGCAGACCTGGTGTGGGGGGAACAAGCTGTAGCCACTGTCTCCCTGGGTACTGGGGCTTTGGGGAAGAGGGGTGCAAACCCTGTGCTTGTCCCCAAAACTGTGACCCCGACACTGGGCTTTGCCTTGACAGCTATGCAAATAACCAGGTTTTCAATGTCCCTATGGGGGGCAAGATTCCTGACATGGACCATGCCTTGACCAGTGAGGGTGAGGCAGTGTGGTCAAAGGAACTGACAGTCTCTTCCATGCACTACACAGGGAAATGCAGCTGTAAGGAGAGAAAGTTGAGGAGTGTCTCGGATCTCTGTAAGACCAAACATGCCTATGTGATCAAAGCCAGTGTGTTGTCTGCTCATGACAAGGGGAGCCACGCAGAGGTACAGGTCAAAGTTCGCAAGGTCCTGCGGTCAGGACAGGTGCCCCTCTCCCATGGCACACACAGTCTCTACCCCATATCCTGGACTATCCGGGGGTGCACCTGCCCCATCCTTAATCCAGGGGTGGAGTACATGCTGGCGGGTCCAGAGGAGGCAGGGACGGGACGGCTGCTGGTCACCATGCAGAGTGTGGTGGTTCCCTGGACCTCCCAACTGGGGGCCCACATATCAGAGGGCCTAAGGCAGGGCTGCCCCTGAACACCCTCTCCAAACCCATAACAGAGCACCCTGAATGGAAATCACTGGTTCACTAGATCATTCAGGAAAGGGACAAACTCAGTGGATAAGGCTTGACCAAGTGTCTTGACCAATAATTGCTATGGAAAATCGTGCCCATATAAGACTACAACCCTGCCATATGATGCAAAGAGGATGGACTGGATACTGGAATCTTTAGAGCCTTTCTTATGAAGATGATTTTACTTGAGGCGTCCTACATAGACAGACAAACACCCCCCTGGAATCTACTAGACACAACAAACCCTAGTATACCAGCTTTTCAGACTGTGTTTAACCAAAGCCATGCCTTTTTATGCCTACCAGGTTCTCAGTACAGTGCTGCTTTTGACTGCTTTTAGTGTACTGTATTTTTTTCAGTGTCCAGTTCCAATCATTTATTTTTCATGTGTAGTGTGCTAATGAAAAgtgcaacaaacacacacacttatttacaTTTTGAGGCACATAAAGGCATCCACAGGAGAGTGCACTGCTTCCAGTCTGCAGCCTTCTTAGTGAGGGCTCCCCAGGTCAAGCCACTCCACCTTATTTTCTATTGTTCTTCTCCATGTCTCTTTTGGGCGTCCTGTCTTTCTCTTCAGCGTAGTGCAATCGCAGGGTGCACGTTCTGGTGGCAGTCTACACACGTCCCAGCCACCGCCATCTTTTCTGCAACAAATAGGGCCTACAGAGTACATAAAAAGATCAACCTGAGAAATGTAAGTGTTAGGAACATGCAGCTAATATCTTAATCTGAAAAGATACAAGGTTCAATGTATGTGGTGCAGTTTCACCGAAGAATGAACAAGATCCCAGAGGACGACTCACTTTCAAAGCATCATGGTCCAGTCGTATGTATGAAGCTCTAGTTTCATGTGTTTGAACAGTATTTAAACATATGGGTAGAAATGTTTGAAAGAGGTAATAAGACATTGTTCAGTAATAACTTTAACAGGACAGGTAAAAGAAAGTACCAGTGCATTAAAGGCTTGAAATGACATGTGTCAAAAGCAGGTGAAGGAAGCACCTTCACTGTGCTCTGACTAGAGGCCGCTCTATGTACTCAGTCTTTCTTCATAAGAACATGAGTTGTTGATAATAGCGGCCAGCACCAAACATATTTGGCCTTCCAGGACCTGGGGCACCTAACCAGAAGAGTCATATCTCAAAGGCTCAAATCCTGAGATTTAAACACACTGTATCTCACATTTTCACATGAATCCTGTATTGACGTCATTGCATTAAACACGCTAGGGCTGTCTGACTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702682 lncRNA downstream 35367 48961907 ~ 48962397 (-) True G617516
TU702683 lncRNA downstream 37160 48959418 ~ 48960604 (-) True G617517
TU702679 lncRNA downstream 38427 48958549 ~ 48959337 (-) True G617513
TU702678 lncRNA downstream 39880 48957535 ~ 48957884 (-) True G617512
TU702673 lncRNA downstream 45435 48951695 ~ 48952329 (-) True G617507
TU702708 lncRNA upstream 3072 49007904 ~ 49040550 (-) True G617540
TU702760 lncRNA upstream 79178 49084010 ~ 49088119 (-) True LOC110527944
TU702768 lncRNA upstream 114182 49119014 ~ 49119479 (-) False G617593
TU702767 lncRNA upstream 114964 49119796 ~ 49120233 (-) True G617593
TU702771 lncRNA upstream 117271 49122103 ~ 49122837 (-) True G617594
XM_021609563.2 mRNA downstream 194686 48787061 ~ 48803078 (-) False LOC100136282
XM_036983421.1 mRNA downstream 194686 48787061 ~ 48803078 (-) True LOC100136282
XM_021609559.2 mRNA downstream 226044 48747496 ~ 48771720 (-) False LOC110527928
XM_021609561.2 mRNA downstream 226044 48747496 ~ 48771720 (-) True LOC110527928
XM_021609558.2 mRNA downstream 226047 48747496 ~ 48771717 (-) False LOC110527928
XR_002474175.2 mRNA upstream 79078 49083910 ~ 49088195 (-) False LOC110527944
XM_021609583.2 mRNA upstream 110212 49115044 ~ 49117838 (-) True LOC110527945
XM_021609589.2 mRNA upstream 131856 49136688 ~ 49144153 (-) True LOC110527948
XM_021609596.2 mRNA upstream 270349 49275181 ~ 49289804 (-) True LOC110527952
XM_021609600.2 mRNA upstream 290208 49295040 ~ 49297305 (-) False mustn1b
TU701964 other downstream 468596 48487047 ~ 48529168 (-) True G616880
TU700211 other downstream 1727693 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 3122064 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 4512012 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 4512359 44484855 ~ 44485405 (-) False G611674
TU702802 other upstream 179592 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 179592 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 190772 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 290423 49295255 ~ 49297248 (-) True mustn1b
TU703492 other upstream 655203 49660035 ~ 49936281 (-) False LOC110527961

Expression Profile