RNA id: XM_021609587.2


Basic Information

Item Value
RNA id XM_021609587.2
length 1584
RNA type mRNA
GC content 0.49
exon number 8
gene id hmces
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49130079 ~ 49135752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTGATCGTATATTCCATCACAGTAGGTAGCGACATGCACAACGTTTGTTTGCGTAACCGCCACGATATCAGAAGAAGAATAACCATCTGAACGCGCCCTCTGACTTATGTTGCAGTGACTGGCAAGTCGAGACGAAGTCCAGTCCGAAACAACAGAAATTTCAACGAGATGAATTTCCAGTCATTCATCCAGTATCTTCTCCTCTCTAACTACACAATTGTCATCACAATTTGGCTTCAGTATGGTGCAAGCCCCGCCATGTGACACGCATAATGAACTTCCATTTGTACCACTGCACGACTGGGCTGAGGATGTGCGGGAGGACTGCATGCACCCTGGCGGCAGATGAAGTCAGCCGCGCCTCCCAGTACAGAGACCGAGGAGGGCAGCGTCGACAGCCAAGGTGGAAAGACGGAGATTCTGTTAAGTACCAACCTTCCTACAACAAGAGCCCCCAGTCTTTGAGCCCAGTCTTGTTGTCCCAAAGACATTTTGTTAAGAATGCCCCAGTGGATGAATGTGTGCTGGCAGTGATGCGTTGGGGCCTGGTGCCTGCCTGGTTCAAGGAGAATGACCCAAACAAGATGCAGTATAGCACCAACAACTGTCGCAGTGAGAGCCTGCTAGAGAAGAAGTCCTACAAGGATCCGCTGTTGAAAGGACAGCGCTGTGTCATCCTGGCTGATGGCTTTTATGAATGGAGGAGGCAGGAGAAAGACAAGCAGCCCTTCTTCATCTATTTCCCCCAGACTCAAGGACCCGTTCATGTGAAAACAGAGGACCAGGATGAGGGAACACCCTGTAAGGAGGATCTACAGACATGCAGTTCTGAGGAAGGCTCTGTAGACCAGAAAGAGGAGGACAAAGGAGACCATGAGTGGAGAGGATGGCGGTTGCTGACCATTGCAGGACTGTTTGACTGCTGGACTCCCCCTAGTGGTGGAGATCCCCTCTACACCTACACTGTGATCACTATGGATGCATCCCCTAATCTTCAAGGCATCCATGACCGGATGCCAGCGATTCTCGATGGAGAAGAGGAGGTCAGAAGATGGCTGGATTTTGGTGAGGTCAAGTCATTAGATGCCCTTAAATTGCTTCAGTCCAAAAATACACTgacctttcaccctgtctcctcATTTGTCAACAACTCTCGAAACAACTCCCCTGAGTGCCTGCAGCCAGTGGATCTTCAAGCTAAGGAGCCCAAGCCTTCAGCCAGCAGTAAGATGATGATGGGCTGGCTGAAGAGCAGCACGCACCCAAAGAGGAAAGAGCCAGACACTGGGGAAGTCAAACAGGAGGGGCACACAAGAGAGACCAGGCCTGAGAAGCAGATGAAGACTGCAGGGCCTCTCCAACAGTGGCTGCAGGGAGCCAATAAGAAGCCCAGGACCAACTGAGTGGGACAGAAACATTGACTGACTGAAGAGAGAAGGGAACAGATTGAAAAATGTAGACCTCATTGTCTTGATATTGCGGTGTGTTGATTGATGTGGAAGAGAGGAAATGGTTTCTGATTATTGTTATGTCTGTCTGGTAATGGTTAAAGAtagttattaaaaaaaaatcagatttTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702390 lncRNA upstream 9101 49120728 ~ 49121019 (+) True G617286
TU702388 lncRNA upstream 11754 49118148 ~ 49118366 (+) True G617284
TU702325 lncRNA upstream 125314 49004217 ~ 49004806 (+) True G617227
TU702323 lncRNA upstream 127817 49001835 ~ 49002303 (+) True G617225
TU702322 lncRNA upstream 128387 49001401 ~ 49001733 (+) True G617224
TU702397 lncRNA downstream 21342 49157094 ~ 49157345 (+) True G617293
TU702408 lncRNA downstream 47770 49183522 ~ 49183749 (+) True G617304
TU702409 lncRNA downstream 48098 49183850 ~ 49184089 (+) True G617305
TU702403 lncRNA downstream 48855 49184607 ~ 49185241 (+) True LOC110527950
TU702420 lncRNA downstream 100229 49235981 ~ 49265280 (+) False G617315
XM_021609586.2 mRNA upstream 788 49123482 ~ 49129332 (+) False tada3l
XM_036983430.1 mRNA upstream 788 49124967 ~ 49129332 (+) True tada3l
XM_036983429.1 mRNA upstream 22751 49087708 ~ 49107369 (+) False LOC110527942
XR_005052594.1 mRNA upstream 24727 49087700 ~ 49105393 (+) False LOC110527942
XM_021609590.2 mRNA downstream 12870 49148622 ~ 49153573 (+) True LOC110527949
XM_036983432.1 mRNA downstream 31251 49167003 ~ 49186969 (+) False LOC110527950
XM_021609591.2 mRNA downstream 36770 49172522 ~ 49186969 (+) False LOC110527950
XM_021609593.2 mRNA downstream 36770 49172522 ~ 49186969 (+) False LOC110527950
XM_021609592.2 mRNA downstream 36779 49172531 ~ 49186969 (+) False LOC110527950
TU702226 other upstream 302893 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 1290398 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 2492166 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 2850787 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 5101892 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU703098 other downstream 436568 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 451118 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 1167678 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 1824742 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 3255596 52391348 ~ 52391633 (+) True G621650

Expression Profile