RNA id: XM_021609589.2


Basic Information

Item Value
RNA id XM_021609589.2
length 2351
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110527948
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49136688 ~ 49144153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGATGTCAAAGATCGCTGACACAGTTGTTTTGGAGGAAGTGACAAGAGACTGAAAACGAAAGAAATAGGCCCTCTTCAAGTAAACAAGCAGGGATTCCTTTCGCTTAATAATTGCTCTTACTTTGGAAACACAAGTGGTCACCTAGTAGTATTGAAAGTATATTGCGTTATAATTAAAGAGACGTGCGTCCTGACTGCAACTAAACCACCACTGGTGGCACCAGCCAGTTTCCGTCCGATCTCGgcaactagctagctatccaGCTAGCCTAGGTTGGGGGGCAGACAGACGCAATTGAATTCATCTGTTTTTCATCCAGCACGACGAAAGGCCCATTTTGACATTCTTTAATATACCATCCATTGGTTCTGGTTGATCAAGCTGTGGCACAATGACGTCTAGGAAGAAAGTACTACTTAAAGTCATCATCCTGGGAGACTCTGGAGTTGGGAAGACCTCCCTGATGAACCAGTATGTGAATAAGAAGTTTAGTAACCAGTACAAAGCCAcaattggagctgatttcctgacGAAAGAAGTGATGGTGGACGACAGGCTTGTCACCATGCAGATCTGGGACACAGCGGGGCAGGAGAGGTTCCAGTCTCTGGGCGTGGCGTTTTACCGCGGGGCAGACTGTTGCGTGCTGGTGTTTGACGTGACCGCCCCCAACACCTTCAAGACCCTAGACAGCTGGAGGGACGAATTCCTCATACAGGCCAGCCCCCGAGACCCCGAGAACTTCCCCTTCGTGGTGCTAGGCAACAAGATTGACCTGGAGAACAGACAGGTGACGACTAAACGAGCACAGGCCTGGTGTCAGAGCAAGAACAACATCCCCTACTTCGAGACCAGCGCAAAGGAGGCCATCAACGTTGAACAGGCTTTCCAGACTATTGCACGCAATGCTCTTAAACAGGAGACAGAGGTGGAGTTGTACAATGAGTTCCCTGAACCGATAAAGTTGGACAGGAACGAACGTTCCAAGCCATCAGCGGAGGCCTGCAGCTGCTGAGGTCCTAGCAGACTTACTTTCGGCCCTGCTACCCTGTCTTGCCTTGTCTAACCCCTATGCCTCACTGTGTGCTCCCCTTTGCCCAATATTATCACTGGCCTTCGTAGATGCGAGTTCCCGCTCGAAAAGTATACTTTACACATCACACACTTACTCTCAAGATAAGTCTCCAAGCCCAAAGAACACCCAGATGGATAGTAGAGCATTTATTAACCTGATATCTGCTTAGTATTTCCCCCTTAACTGTCTCATGACAATACCTTTTTTTATAGACACCATTGTTTCCATGGCACCACCCAacctcacacacatgcatacatacagaaATAAAATCCTATGACATTTTAAAGGGGGGGGGTTAGTTCCAGTGGTAAAGGAGGTTGTGAAGGATCAGAATGatgaatttatatatatatatatatatatatatatgtatgtatgtgtgtgtgtgtgtcatgccaATGTACTGCCCAAAGATACATGTGTTAATTGTCTTGGAAGTGAACTAGCAAGTCCAACATACGAGTGTGTTGTTCAAGGCATTTTTTTTGCACTTTGTCATGTAGACTTATTAAAATCCTGTTTGACACCTCATTTTGGAGCCAcaataaaaaacacacattttatgTCGAGGCTGAAGAGGCAGTGTGGATTTTAACTCTACTGTCCCCTATCTGCCCGACACATGCTTTGTTTCTCAATTGGAAAAGTCGAGCAGCAAATTGTCAACATTCTGCGACCTGACACAAGGGGTAGAGAATCAAAGGGAGGACGTCCTATCGGATACAGCTGGGGGAGGGGACAGATATTTTTCAAGCATATAAATATGAGTCATTATTAGTTATTGCCTCATTTTTACACTGGCAACTGTTGCAAGACTTTATGTGCAAATCTTTAAGTCTGTCAATTGTTTTGCGTAGGCAAAAACCCTGCATGTTGTCAGTTTCCATGTCTGCTGATAGCTCAGGTGCTTGATATTTCTTTTAACTGATCAGATCTGTCTGTATATTGTTATTACTATGTTTAGAATTTGAATTGCATCAGAGGACCGAGAACACAACTTTTTATTTAAATTATACAAAAAATACAGGGGAAATCGGTTAGCATTAATCATATTAATGAAATGGCTTCATCTACATTGTTTGAAAATGGTTTTGGATTTCAAGGAACTGATAAGTCATTGAATaaagaatgtgtgtgtttctgcaagGAGAACATGTAAAGCATAGGTGACTATCAAGgctcatactgaacaaaaatataaacgcaacatgtaaagtgttggtccaatgtttaatgagctgaaataaaagatcccagaaattttccata

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702771 lncRNA downstream 13851 49122103 ~ 49122837 (-) True G617594
TU702767 lncRNA downstream 16455 49119796 ~ 49120233 (-) True G617593
TU702768 lncRNA downstream 17209 49119014 ~ 49119479 (-) False G617593
TU702760 lncRNA downstream 48569 49084010 ~ 49088119 (-) True LOC110527944
TU702708 lncRNA downstream 96138 49007904 ~ 49040550 (-) True G617540
TU702780 lncRNA upstream 3039 49147192 ~ 49147481 (-) True G617603
TU702782 lncRNA upstream 7928 49152081 ~ 49153562 (-) True G617605
TU702783 lncRNA upstream 9656 49153809 ~ 49154080 (-) True G617606
TU702784 lncRNA upstream 11547 49155700 ~ 49155930 (-) True G617607
TU702794 lncRNA upstream 28287 49172440 ~ 49173457 (-) True G617617
XM_021609583.2 mRNA downstream 18850 49115044 ~ 49117838 (-) True LOC110527945
XR_002474175.2 mRNA downstream 48493 49083910 ~ 49088195 (-) False LOC110527944
XM_036983427.1 mRNA downstream 131852 48999055 ~ 49004836 (-) True LOC110527937
XM_021609573.2 mRNA downstream 131856 48997764 ~ 49004832 (-) False LOC110527937
XM_021609563.2 mRNA downstream 333610 48787061 ~ 48803078 (-) False LOC100136282
XM_021609596.2 mRNA upstream 131028 49275181 ~ 49289804 (-) True LOC110527952
XM_021609600.2 mRNA upstream 150887 49295040 ~ 49297305 (-) False mustn1b
XM_021609597.2 mRNA upstream 159003 49303156 ~ 49317526 (-) False LOC110527953
XM_036983435.1 mRNA upstream 159003 49303156 ~ 49317530 (-) False LOC110527953
XM_036983436.1 mRNA upstream 159003 49303156 ~ 49317531 (-) True LOC110527953
TU701964 other downstream 607520 48487047 ~ 48529168 (-) True G616880
TU700211 other downstream 1866617 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 3260988 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 4650936 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 4651283 44484855 ~ 44485405 (-) False G611674
TU702802 other upstream 40271 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 40271 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 51451 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 151102 49295255 ~ 49297248 (-) True mustn1b
TU703492 other upstream 515882 49660035 ~ 49936281 (-) False LOC110527961

Expression Profile