RNA id: XM_021609593.2


Basic Information

Item Value
RNA id XM_021609593.2
length 4075
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110527950
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49167003 ~ 49186969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGGCGCCAGTCGCGTCAGTGTACTGCCACAATTCAATAGGAAAGTGCGCCCGGGTACCTCACGGATCAGGCGTTTCAGAGATTAAAGTGTGTTTGAACAGCTGATCGTAGTCATAGATCAAACTTTCAGGTAAATTCAgaagaaatatttttttttccagTGGAATAAGATTGGATGCATGTGTTATGAGTATAACATTGCAGCAATGGTGCAATGCACTgtgtcagtaagagccaaTAAAACGGATCAAGGATTCTATTTCTGAAGCAAAAAACCTGTAAGGAGAGTGTGCCGAAAACCCGTATGACATCACTACGTCCATCCTTTTCTCCACATTTCGGGACTGTAAAAAGTGCTTAATCCAGGAGAAGGACCACATAAAGATAACTTATATTTTCAGAAAAAGTACGACGTTTCGGTGATATCTTGGATAAAGTTATCGACGATTTAGGTATGGAAGTCGCAGCCGATCAATCTCGGTGGATGGCGCATCATCACGCCGTGTTGAATGGGCAGCATCCAGACTCGCATCACCACAGCTTGGCCCACAACTACATGGAGCCCATGGCGCCGCTTTTGCCCCCAGACGAAGTGGATGTGTTTTTAAACCACTTGGACTCTCAGGGGAACCCCTACTATGCCAACTCCCGGGCCAGGGTTACATACAGCCAGGCACATGCTCGCCTTGGGAGTCCGGTTTGCCGGCCACACCTCATCCACAGCCCCGGCATTCCGTGGCTTGACAGCGGGAAGGCGGCCCTCTCTGCTGCCCACCACCATAACGCATGGGCGGTCAGTCACTTCAGCAAGCCAGGAATGCATCCTGCTAGCTCCGGCTACCCTTGCAGTAGCAGCTCCAGCACTGCTCCGGTGTCTTCCCTCACCCCTGCGTCCCACTGCAGCCCGCACCATCTCTACAGTTTCCCTCCTACGCCTCCCAAAGACGTGTCTCCGGACCTCGGCCCTACTTCTCCAACCTCCACCTCGACAAGAATGGACGAAAAGGAGTCCATCAAATACCAAGTGTCACTGGCAGAGGGAATGAAAATGGAGGGTTGCAGTCCTCTCCGCAACAGCCTGGCTTCGATGAGTGCCCAAACTCCCGCAACACACCACCCCATCCCGACCTACCCATACTCTCTCCCAACACCACACGAATACGGCGGCAGTCTCTTCCACCCCGGTAGCCTGCTGGGTGGATCTTCATCCAGCTTTACGCCGAAGTGTAAAAGCAAAGCCCGGTCGTGCTCAGAGGGGCGCGAGTGTGTCAACTGCGGTGCCACCTCCACCCCGCTGTGGCGGCGGGACGGGACGGGTCACTACCTGTGCAACGCCTGCGGCTTGTACCACAAGATGAACGGCCAGAACAGACCTCTCATCAAGCCCAAACGCAGACTGTCCGCTTCGAGACGAGCTGGCACCTGCTGCGCTAACTGtcagaccaccaccaccaccctttgGAGGCGTAACGGCAATGGCGACCCGGTGTGCAACGCCTGCGGGCTCTACTATAAACTGCACAACGTCAACAGGCCAATGACCATGAAGAAGGAGGGCATCCAGACACGCAACCGCAAGATGTCCAGCAAGTCCAAGAGGGGCAGGCGTTCCGGAGATGGCTACGATGAGCTGTCCAAATGCATGCATGACAAGTCCTCCCCCTTCGGCGGTGGCCCTGGCCTGGCTGGACACATGACCCACATGGGCCACCTTCCCCCCTTCAGCCACTCCGGACACATGCTgcccactcccactcccatccACCCTTCGTTCGGCCATCCTCACCATCACTCCGGACGGTCGCCGGCTTGGGCTGAGCACTGAAACCTCCTGAAGCCCCTCCATCACCCCTCCACCATATCATCACCACGAATGCTTCTGTCTCTAGAGGGGTAAATTGGGCTCACTGTCAGTAGCACATTGTTTTGCCTGGCCTCATTTAGAGAATTGATGGAGAGGAGACGTGACTGAAGGGAGAGAGAACGTGAGTGTGCGAGGGTGAAGCGGAACATGGGCGTGTTGAGTTGCTCCCTTCAAGTTGCCTTTTTTTTTACTGAGTCACTTTGGTACCCCTCCCACCCTATGAGAGAAAAGATGTGAGGTATTAGGAGAACCACTGCTTTCCCCTCCTGTACCTCTGTAGTGTAATGAGACCAACCTCCCCCTTCCTGTTGTGGACAGACTGTTGACACCGTGGGTATGAGAGACTTTCTGAACCAGCCTccccacacatgcatacacacacacacaccactgacccctcacctctcacATGCTGGAATACACACCACCCGCCTGGTCCCCCTGGACTTTATTGGAAAAAAGAAGCAAGCAAACAGAAAGTTTATATAAAGTTAataattgttattattgttgttataatTGATGTTatactagttgttatgataatttATTTTCACTCTTTTTGCTTTCTTCAGAACACAAGGATATTGTTACGATTATAGTTTCAGTGTTATTATGTAAAGAAAAGAACACAGACTTATCTTAGACGAGACATTGTTCCTAAGCTGTATGTTTTTAACATTTTGTCCATCTCACAAAATAAAGGAAATCAAGTTTTAATACTAAATAATGTCACTGAGTCCTTTAAATGTGAAATGTAtcgtgtctttgtctctctctcgccatctgtGTCtattggagtgtcagtgtgaaTTCCAGTGTTGGTGAAGAGGTTTTGATTCCTGCTGTATTTCTAAGTGATATCAGATGTAATGAAGCCAACTCTATGATCCCCAAAGTGCAGTAATGGTTTTGTTGAGCTCCTCCCCTGAGTGATGTGCTGCTGTTTATAGAAGGCTTCTTTGTGGAGCTCACGCCCCAGGGTGCACCAGTGTGACCCAGACAGCAGGCTCCAAACCCAGGGTGAGCACAGGGCTCCCACGTCACACACTAACGCGTACACATGTCCTACAGAAATACACATTTTCGGttcatattacagtttttttctatcgctttggtgcaattttcacaagtacagtatgtggtacattttcacaacacTTAGTACAAAACAAGGCAGTTGTTTAAAAACTCaaagcacattttcaattgactaagtACAACACACAAAATCACAGTCCCTTTTTCACCAAACTTAATCAGTGTTACATCTCGAAATACATGTTTCACATTGGAATACATGTTCATATAAAGTAAGTTGCttttcacaatgcaatgctccCATTACCTTTGATATGGTTGTCTTCTCATTTGTTAAAATACATTTGACTATTACTTAATCCGACTGCTCTTAATGAATAATCACTTAACCATTTGGTAAACCTACAGCTTTTAAACTGGTTTGCCTGTTTCACATTGCTTCACAAAAAATTGTATTGGCAAAAAGAGTACTGTAATACTTTGATATATACAATTTACGTAGAAGACACTTTTATTCAAACACGAAAACAGTCCACAACTCTGGTGTTGCTAGGGCCATGCTCTTATGAACTGAGCCACGTACAGGACCACTACCACACACAAGTACAaacaatactgtaaaatacaatacaCAGGTTCAATATAGATGGAAGATGTATGATTGCCAAACCCATGAGCGTACCACCCTCCTTCATCCCATAGACGAGGCATGCAAGGATTTCAATCCAGACCTATGTCAGGCTTTCTCCCCAGGTGCATGAACAATGAGGACATTTACGCCGATTCCGATGAGAACTCGTAGCCAAATGCTCAAGACAAGCTTGATGCAAACATTACGTTTCTTTCATTTATTTTGTTTGAATACATTGTGAAAGATGTCTTCAGTGGAAATGTGATGTTCAGTCAATTTTAGTGGGTAGTATTGCCTAATGTGAACAGTGTAATGTACATAAATGTACAGTGCTGTAGCAAATTGCATTCAAAGGACactttttaaacattttctatttctatattttctattGAATTAACTGGTTGTTGTGTGTTTTGGTGATTAAATCGATGTTCTTatgttattttacagtaaacTTATTGTTTGGATCAATGGCTGTGCAGTAAAAGATGTCTCATAACAAAAGTAATGCACAATAAATGGTTTTGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702397 lncRNA upstream 15177 49157094 ~ 49157345 (+) True G617293
TU702390 lncRNA upstream 51503 49120728 ~ 49121019 (+) True G617286
TU702388 lncRNA upstream 54156 49118148 ~ 49118366 (+) True G617284
TU702325 lncRNA upstream 167716 49004217 ~ 49004806 (+) True G617227
TU702323 lncRNA upstream 170219 49001835 ~ 49002303 (+) True G617225
TU702420 lncRNA downstream 49012 49235981 ~ 49265280 (+) False G617315
TU702423 lncRNA downstream 77937 49264906 ~ 49271638 (+) True G617315
TU702460 lncRNA downstream 87914 49274883 ~ 49297618 (+) False G617346
TU702461 lncRNA downstream 87914 49274883 ~ 49297618 (+) False G617346
TU702454 lncRNA downstream 88209 49275178 ~ 49282971 (+) False G617345
XM_021609590.2 mRNA upstream 18949 49148622 ~ 49153573 (+) True LOC110527949
XM_021609588.2 mRNA upstream 36770 49130079 ~ 49135752 (+) False hmces
XM_021609587.2 mRNA upstream 36770 49130120 ~ 49135752 (+) True hmces
XM_021609586.2 mRNA upstream 43190 49123482 ~ 49129332 (+) False tada3l
trnae-cuc-4 mRNA downstream 111537 49298506 ~ 49298577 (+) False trnae-cuc-4
trnae-cuc-5 mRNA downstream 118534 49305503 ~ 49305574 (+) True trnae-cuc-5
XR_002474075.2 mRNA downstream 197333 49384302 ~ 49386132 (+) True LOC110527119
XM_021609608.2 mRNA downstream 286557 49473526 ~ 49487883 (+) False LOC110527957
XM_021609606.2 mRNA downstream 286584 49473553 ~ 49487883 (+) True LOC110527957
TU702226 other upstream 345295 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 1332800 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 2534568 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 2893189 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 5144294 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU703098 other downstream 385351 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 399901 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 1116461 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 1773525 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 3204379 52391348 ~ 52391633 (+) True G621650

Expression Profile