RNA id: XM_021609596.2


Basic Information

Item Value
RNA id XM_021609596.2
length 3359
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC110527952
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49275181 ~ 49289804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAGTAGGTAGAGAGAGTAGGCTATGTGGACAGACAAACAAATATATGTAAACACGCTGACACAAATCCCTAGAGGCATACAAGAACACAGATCTACACACACCTCGGGCCTCCTGCCACGCTGAGGTCAGGTCTTCTGGTCATTGCGCCAGTATAAAAGCAGACAAACGCACACACTCTGACACTTCTCCTTTGAGCTGGGCGGTAGGAAAGGGTTGAGTTTTCTAAGCAGTGAAGTCTGTGTTCAGCTGCAGTTTGGTCATGTCTGGAGTGTGGACTGTGCTGCTGCTATTGGGATGTGTCTTTCTCCCGGCTCTGTCGCATGGAGCTCTGGTTATCTCACAGGATGATTCCACACCACAGGGCTCTGATGGTGCTACACGGCTACTAAAGaaaagaAGTACAGATAATGCGGAGgTGGAGGTGTACAGTTTAAAGGTGGATTGTAAGGTCGCTTCTCGTTTTGCTCACACGGTCATAACCTCCAGTGCTCTGAACAAGGCCAACTCCTCTCAGGAAGTGTTCTTCGAGGTGGATCTGCCCAAGACCGCCTTCATCACCAACTTCAGCATGGAGATAGAGGGTCAGACGTACACGGGCGaggtgaaggagaaggagaaagccAAGAAGCAGTATCAGAAAGCTGTTTCCACAGGGCAGACTGCAGGACTGGTCAAGGCATCAGGGAGGAAGATGGAGAAGTTCACTGTGTCTGTGAACATCGCGGCCAATAGTAACGTCACCTTCATTTTGACCCACGAGGAGTTGCTTCAGCGTAAACTGGGCCAATACGAGATCATGACCCGGGTCAAACCCAAGCAGCTGGTTCAGCACTTTGAGATTGTGGCAGATATCTATGAACCCCAGGGCATTGCCTTCCTGGAGGCCTATGGAACCTTCATCTCCAACGAGCTTCTCCCCCTGGTGGAGAAAACAGTCAGCGACAAAAAGGCACACATCTCATTCTGCCCAACACTGGACCAGCAGAGGAAGTGCCTGGGTTGTGAAGGCACCCTGATTGACGGGGATTTCTTCATCAAATATGACGTGAACCGAGCTGAGACCATCGGTGACATCCAAATAGTGAATGGGTACTTTGTGCACTTCTTTGCGCCTTCGGACTTACCCCGAGTTCCAAAAAATGTGGTGTTTGTGATCGATAGGAGTGGGTCAATGAGCGGAATCAAAATGAAGCAGACAAAGGAAGCTATGCTGGCCATCCTGAATGACCTGGCTGAGGACGACTACTTCGGCATTGTCCTATTTGACTCTAGCATCTCAACATGGAAGGAATCTCTTACCAAGGCCACCAAGGAAAATGTGTCAAAAGCCCAACAATTTATCCAGGGAATAACTGTTTCGGGAACCACTAATATAAATGATGCTGTGATGAAAGCTGTGGACATGATAATGAAAGGCAAACGAGACAAGAAGGTCCCGGAGAGGAGTGTGTCTATGGTTATCTTAATGACAGATGGAATGCCCAACTCAGgaGAGTCTTCTGTACCACAGATTCAGGAGAATGTCCTTCTTGCTATGGGTGGGAACATGACTCTGTTCTGTCTGGGCTTTGGGGATGATGTGGACTACTCCTTTCTGGATGTGATGTCTAGACAGAACAAGGGACTGGCCCGAAGGATCTATGAGGGCTCTGATGCCACCGTCCAGCTTCAGGGTTTCTATGAGGAAGTGGCCAGCCCCCTCCTCTCCGAGGTGGACCTGCGTTACCCTGACAACCTGGTGAACTCTCTGACTACCAGTCACTACAAGCAGCTGTTCAACGGCTCAGAGATCGTGGTAGCTGGCCGGCTCACTGACTATAGCCTGGATAACTTCCTGGTGGAGGTGTTTGCACATGGGTATGAGGAGGACTTTATTATCAAAGGCCAGGCCAGTGCCCAGGAGTGGGACATACTGTACCCTGAGCAGGAGTACATATTTGGGGACTACACTGAGCGTCTTTGGGCTTACCTCACCATCCAAGAACTGTTAAGCAAGAGAGAGACTGGTACTGCGGAGGAGAAAGGAAATGCTACTGCCCAGGCTCTGGAGATGTCCCTGCAGTACAGCTTCGTCACCCCCCTTACCTCCATGGTGGTCACCAAACCTGAGACTGACGAGGAGCCAGAGGGCCCCCTCATCGCCGACAAGCTGACCGAGGATGAAAGGCAGAAAGCCCAGAGATTTGGTCATTTTGTACCCCAGCTGATGAGCAACGCCTGGACGCACAGCAGGATCTCACCTACAAACTTTGTGGATGGAGACCCTCATTTCATGATTGAGTTGCCAGAGCAGGAGGATGCACTGTGCTTCAACATAGACGACAGGCCTGGTACCATCTTCAACCTAGTGAGAGACCAACTGGCAGGTATTTTGGTCAACGGCCAGACCATTGGGGATAAGAAAGTGGCCCCTGATGGCAAAGTGAACACCTATTTTGGTCGCTTTGGCATCGTTCACCAGGGGCTGGGGGTGAGACTGGAGGTGACCACTCATGACATCACTGTGTCCCAGGATGGCAAGCAGGCCAAGCTCTTCTGGTCAGACACCGCCTCTCTCAAGGGAGCCAAtatggACCTGCAGGTGACCAAAGACCGCAGCTTGACTGTCACCCTCAGGGACTCGGTCCGGTTTGTGGTCATCCTACACAAGGTGTGGAAGCAGCACCCCTACCACCAGGACTATCTGGGATTCTATACCCTGGACAGCCACCTCTTATCCCCCAGCGTCCACGGCCTTCTAGGTCAGTTTTACCATGGCGTGCAGTTTGAGGTGAAAGACATGCGTCCAGGAGAGGTGCCAGAGAAACCAGATGCCACCATGCTAGTGAAGGGACAGGAGCTTACAGTGACTAGGGGCTGGCAGAGGGACTTCCGCTGGGATGTGAAGAATGGAGAGAACATCCCCTGCTGGTTCATCCATAGCAACGGCAACGGCCTCATCGATGGAAACCACACAGACTACATCATGTCTGGACTCTTCAAGACTGTCTGAGTCTGGTACACTAGCAGTCAACCTCCTCAAACTGTACAGTACATTAGTCACACATTTCACATGGATTCAACACCCTGTATGTGCTGAAGATATACCATCATGACATGAGAATAATTGTGGGTAACGTTAGATAACATCTGACTGGAGTACATTTAATTAAAAGATAAGTGGCAAGAAAGGGGACATTTATAGATATTGATATAGATAGTGATGAGCAAAACCTGTTGAAATAAATGGACCCACTTCCACCTAACTTGTGTGTATTTAACCAATGTTGAATGGCcacggagagagaaagatatacagAGTGATTAAAAATCAACGCCCCTGTGTGCTTGACGTAGGGGCGTTGGTCAGACCTGA

Function

GO: NA

KEGG:

id description
K24513 ITIH3, SHAP; inter-alpha-trypsin inhibitor heavy chain H3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702820 lncRNA downstream 7048 49205572 ~ 49268133 (-) False G617637
TU702818 lncRNA downstream 7048 49264855 ~ 49268133 (-) True G617637
TU702807 lncRNA downstream 83623 49191356 ~ 49191558 (-) True G617628
TU702799 lncRNA downstream 93610 49180790 ~ 49181571 (-) True G617621
TU702795 lncRNA downstream 97084 49174363 ~ 49178097 (-) True G617618
TU702834 lncRNA upstream 8841 49298645 ~ 49301227 (-) True G617650
TU702920 lncRNA upstream 124322 49414126 ~ 49414400 (-) True G617730
TU703079 lncRNA upstream 252949 49542753 ~ 49542966 (-) True G617875
TU703080 lncRNA upstream 253223 49543027 ~ 49543236 (-) True G617876
TU703081 lncRNA upstream 253516 49543320 ~ 49543686 (-) True G617877
XM_021609589.2 mRNA downstream 131028 49136688 ~ 49144153 (-) True LOC110527948
XM_021609583.2 mRNA downstream 157343 49115044 ~ 49117838 (-) True LOC110527945
XR_002474175.2 mRNA downstream 186986 49083910 ~ 49088195 (-) False LOC110527944
XM_036983427.1 mRNA downstream 270345 48999055 ~ 49004836 (-) True LOC110527937
XM_021609573.2 mRNA downstream 270349 48997764 ~ 49004832 (-) False LOC110527937
XM_021609600.2 mRNA upstream 5236 49295040 ~ 49297305 (-) False mustn1b
XM_021609597.2 mRNA upstream 13352 49303156 ~ 49317526 (-) False LOC110527953
XM_036983435.1 mRNA upstream 13352 49303156 ~ 49317530 (-) False LOC110527953
XM_036983436.1 mRNA upstream 13352 49303156 ~ 49317531 (-) True LOC110527953
XM_036983434.1 mRNA upstream 27780 49317584 ~ 49334930 (-) True LOC110528962
TU702811 other downstream 79211 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 89085 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 89726 49184424 ~ 49185455 (-) False G617624
TU701964 other downstream 746013 48487047 ~ 48529168 (-) True G616880
TU700211 other downstream 2005110 47268323 ~ 47270071 (-) True LOC110527888
TU702832 other upstream 5451 49295255 ~ 49297248 (-) True mustn1b
TU703492 other upstream 370231 49660035 ~ 49936281 (-) False LOC110527961
TU704151 other upstream 1014644 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1666467 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 4015732 53305536 ~ 53322831 (-) True G622985

Expression Profile