RNA id: XM_021609597.2


Basic Information

Item Value
RNA id XM_021609597.2
length 3829
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110527953
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49303156 ~ 49317531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATGAGTGGGCAGTCTGAACAGACTCAGAAGGGATGTAGCTTGAAATTCCAGTGGTAAATTAGCTAGCTATGCAACGAATGGACTGGATACTCTGGTCATTATTCATAGATTTTATGCTAAACAGCTTTTTCAAATAAAATCTGGAGTCGTGAAAAGATCAATATCATGCATTTCATACATGCAGGAGGGATCAATTGCAAGTAACGTTACTCGAACTGGACCAGACTATGTAGCTAATTTAGCTAGCCTAGCTAAATTACCGGCGTTAGCAACTACCTGCTTCACCCTGGTAGCGTTAGGCTAGCTAAAATGATAACTGGTGGTTTGTACCTGACGCGATATTAGCGCAACACATTTGTATTTACTCAAGGCGCTTGAtagcatagctagctaacgttaagtgGTACAGAAATAGCCTAAATCAGCTAGCTTCATTTGCTAGCTAAAATGACATGAAGAACATGCCTTGGGATGACTCATCTTTTACCCGACTGATGTTAAATGCAACTTTGTTGTTAAATGCAACTTGTTGTTTCCGTTAGTAAAACATTGAGTAGCTGCATGCATGTAAGTGTGGTATATGCGTGAAGTATCCTTGTCCATGCTTGCCTGTGTATCTAGCTAAGCTAACTAGTTCACGTTAGGTAGGGACCCAAGATGGGTTTTGATTTGTCGTAAAAGAAGATGCTGACGCATGGTATGTATCTCATCCTTTTATGGCTTTTCGGGAATAATATTATCAACAATGGCATTTGTTTGCTGACACTGGCTACATAGGAAACGAAAAGATATGGATCCGCAGTTAAAAGGGAGAATATTCCATTACTAGTGGCTAGTTATCGTTCTCTGTTTTGCCGAGATTGTCTGCATAACTAGCTAATCGATTGCTAGCTGGATGACGAAGACACCCATTCTATGTGGATGAGACATTTAAATTGACGTTATTGCTTGGCTATCTACCTATATGCCATCGCCCCAACAACCCATTGTTTTATCTGGTCAACCATGGCGGTTAGCGGGGTGAGTCTCCTTTCTCAAGCCGGGGACGTGGCTGCTCCGGCCGCTATGTCCTCTTCCAATACGTCAGTGTCCGCCAGTCCCACGCCAGATGCGGACACCCGTGGCTGCGAGAACGGTGCCTTGATGGACTCTTTCGGCATCTTCCTGCAAGGCCTGCTAGCGATGGTGGCCTTCAGTACGCTGATGTTAAAGCGCTTCAGGGAGCCCAAGCATGAAAGAAGGCCCTGGAGGATCTGGTTCCTGGACACCTCCAAACAAGCCATTGGGATGCTGTTTATTCACTTTGCCAATGTCTACCTGTCTGACCTCACAGAGGAGGACCCCTGTTCACTTTACCTTATAAACTTCCTCCTGGATGCGTCTCTGGGCATGCTGCTTATCTATGCCGGGGTGAGGACTGTCAGTGCCATTGTAGAGTGGAGGCAGTGGGATGCTCTACGCTTCGGAGAATACGgagagcCGGTGCAGTGCACTGCGTGGGCGGGCCAGTGTGCTCTCTACATCCTCATCATGATGTTTGAGAAGGTCCTGATCATCCTGGTCCTACTCATCCCCCAGTGGAAGAAGCTGGCTCTCCTGAACCCCATAAACAATCCTCAGTTGGAGCTGGCCATCGTCATGCTCATCGTCCCATTCTTCGTTAATGCCCTGATGTTTTGGGTGGTAGATAACTTCCTGATGAAGAAGGGGAGGACAAAAGCCAAGCTGGAGGAGCGGGAGGTGGGGGAGGATGTGCGGGGCAACCGTAAGGTGCGCTACAGACGGGCACTCTCCCACGACGACTCGGAGTCTGAGATCCTGTTCTCGGCTGACGATGAGATGGACGACTCGGAGGAGGAGGATGTGCGCCGGCTCACCGGCCTCAAAACGGTCAAGAAAAAGAAGCACCGTATGGGGATCCCTGTTTAACCTGGGCCTACCCAGGCTGACTTGGTCTAACCCACTCCTGTGTCCACTCGCCTCACTTCAcgtccccactctctccctctccaggccCCGTTGCCCTGACTGGAGCCTCCTGGGAACATATCGTCTAGATTCCTCTAACAGCAGGCTAGCATTGGTCTCTTTGTGAGTAGGGTGCCTCTGTAGGGAGGTGGGATCATGGAGGACTGCAGATCATGGGGACTATTGGACTGCCTTTACTACACATTTGCATGGGACTcctgcagcctctacactggGAATAGAAACACTCGGGAAAGTATTTTGCTGCAGCTAACCACGTCTGAGATTCCACCATAGATCTATCACTTATGGTGGTGACACTCATTGAAGAAATGATTTGTTATGATTGTGGAAAACCGTTAACACTGGTGTATTATAGGAACGTTTGGGACTGGTTGAGTGGGTGACGCAGTATAATTGCTAGCACCCCTTTTACTGTGGTTCCACACGGTCTCTTAAGAGGCCACGGATAATATTAACTGCATCAGGTTACGCTGTGAATGGTTGTTACTTTTTCTGTGGTTTAACAGATGACCCCTGTTGGAtgtagagggagagaacaggcACCTGGGATTGCACTCGGTATTTCCCTTGCCTTCAAGCAAACCTCTGTCATTttaacattttaatacatttgatacTCATCTTCCGAATCTAAAAGTGATTGTATTCCTCATTTAGATTCCGTATATAAAATGTATGTCTCTTCCTCAGCTAGGCTGACTGCAATGGCCTGTTATAAGAGTTGGTGGAGGTGTGCGTCTGTCTGAACTTCTCATTCATGCATGTGCGGGAAGTTTAGGATGATGCTCCTATGGAGGCTTTGCTCTGTAAACATGCAGTGTTTTTATAATAACACTCACATTTCTAACTCCTAAGCCTATATCATGACTGCAGAGGGAGGACGGGTCAGGACAGTGCAGCTTGGCTGTGTGTGTCTCAACCATGCACCACCCAACCTGAACCTAAGGGACTGAGACCCCTATCCCACTGACGGTACAGCCAGGCTTTTAGGTCTGCAGGCCTGGATCGGGCCCTTCTCTCCCTGTATGTGTATATGACTTAGCTAGGATCACTTCTGTTACCTCTTTATTCCTAGTCTTTGGTGTgtcctgtttttatttttttacagtaaGTTATTTTGGACTAAAACCATGAGACTGAACCTACACCATGTGTTCTTAATTCAGAGACGGAATAGATATGGGACCTGAGGGTGTGTCCTCACAACCAATGTTCAAACTCTCTGCTCTTGCCCCCATCACTGGTCTAAGGATGTTCtttgtttgttttgtatttttgtatttgttttgttcaTTCCTTGTTTTCGACAATGTGCCTGTGTGAATTTACCATGTTTGTGCATGTTCATCTTGTGCCTCAGATCTTCAGACTTGCAGTAGCATTCAGTTGGTTTGGCTCAGATGTTGAGAACTTGACAGAAGCACAGACCTCTAGACTGGGAGTGACTTTTGGGCCGGTGTAcaacctacagtacagtggagAGCAGTGCGggtatgtttgtatgtttgtgtgtgcagtGTTGTAGTACTCGAGACTGGTCTCgagaccacatattgagtgtctTGATGTCAGATACATTTGTACTCTGTCTTGACTCGGTCTAGAACAGTGACGACTCGTAATTTCTTCCCGATACCAGCAGAGTAAAAGTAAAACATAATTATCAACTTCCATTCAGTCAGTACATAAAACCACTTCGCCAGGCcaaatatatgtatatgtattcagaccccaagactttttccacattttgttacgctacagccttattttaaatcctcaatctacacacactaccccataatgacaaatcagaAAGAttctttttagacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702834 lncRNA downstream 1929 49298645 ~ 49301227 (-) True G617650
TU702820 lncRNA downstream 35023 49205572 ~ 49268133 (-) False G617637
TU702818 lncRNA downstream 35023 49264855 ~ 49268133 (-) True G617637
TU702807 lncRNA downstream 111598 49191356 ~ 49191558 (-) True G617628
TU702799 lncRNA downstream 121585 49180790 ~ 49181571 (-) True G617621
TU702920 lncRNA upstream 96600 49414126 ~ 49414400 (-) True G617730
TU703079 lncRNA upstream 225227 49542753 ~ 49542966 (-) True G617875
TU703080 lncRNA upstream 225501 49543027 ~ 49543236 (-) True G617876
TU703081 lncRNA upstream 225794 49543320 ~ 49543686 (-) True G617877
TU703082 lncRNA upstream 226577 49544103 ~ 49544412 (-) True G617878
XM_021609600.2 mRNA downstream 5851 49295040 ~ 49297305 (-) False mustn1b
XM_021609596.2 mRNA downstream 13352 49275181 ~ 49289804 (-) True LOC110527952
XM_021609589.2 mRNA downstream 159003 49136688 ~ 49144153 (-) True LOC110527948
XM_021609583.2 mRNA downstream 185318 49115044 ~ 49117838 (-) True LOC110527945
XR_002474175.2 mRNA downstream 214961 49083910 ~ 49088195 (-) False LOC110527944
XM_036983434.1 mRNA upstream 58 49317584 ~ 49334930 (-) True LOC110528962
XM_036983440.1 mRNA upstream 24832 49342358 ~ 49357758 (-) False LOC110527955
XM_036983441.1 mRNA upstream 24832 49342358 ~ 49380683 (-) False LOC110527955
XM_036983439.1 mRNA upstream 24832 49342358 ~ 49380684 (-) True LOC110527955
XM_021609604.2 mRNA upstream 71511 49389037 ~ 49433382 (-) False LOC110527956
TU702832 other downstream 5908 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 107186 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 117060 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 117701 49184424 ~ 49185455 (-) False G617624
TU701964 other downstream 773988 48487047 ~ 48529168 (-) True G616880
TU703492 other upstream 342509 49660035 ~ 49936281 (-) False LOC110527961
TU704151 other upstream 986922 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1638745 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 3988010 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 5754953 55072479 ~ 55075396 (-) True G625426

Expression Profile