RNA id: XM_036983440.1


Basic Information

Item Value
RNA id XM_036983440.1
length 4470
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110527955
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49342358 ~ 49380684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAATGATTTTCTGTCTGATTCTTTCTTCTTCTCCCGCTGTCttatattgctctctctctccaactctctcacaTAGTCCCTGGGACAGGAGAGgaatttcttcttcttctgagtCTTTCACAATGGTCTCTCTCCCCTCCGATGTCACAATGTAGGGTGTTATTTTAGCATGGAGGCTGCTGACTGAGTGGTCACCATGGAGCCCTTCCTGCGCATCGCCTTTAATGCGTTTGATGTGGGGGTCCTGCCCCCCCTGACTAACGATCCCTTCTGTGCCATTAAGATGAAGGAGTCCCTCAGCACTGAGCGAGGGAAGACCCTGGTCCAGAGGAAACCCACTATGTACCCAGCCTGGAAGTCCTGTTTCGACGCCCACATCTGCGAGGGCCGTGTCCTGCAGGTGATTCTGATGAAGACCACAGAGGAACCATTGGCCGAGGCCACGGTGGGCGTGTCCGTGCTGGCCGAGCGCTGTAAGAAGGGCAATGGCTGTGCTGAATTCTGGGTAGACCTGCAGCCTTCTGGGAAGGTTCAAATGGCCATCCAGTTCTTTACGCAGGACACAGACACAGCAGCAGCGTTTAAATCGACAGTGAAGATGCGCGAAGTGGAGGACGAGCCGAAGACACTGAACCGAAGGAGAGCCATTAAACAGCCCAAGGTGCACTTCATCAAGAACCATGAATTCACCGCCACCTTCTTCGGACAGCCCACCTTCTGCTCTGTCTGCAGGGAGTTTGTCTGGGGACTCAACAAGCAAGGCTACAAGTGCCGACAATGCAACGCGGCTATCCACAAGAAATGCATCGACAAAATCATTGGGAGATGCACCGGAACAGCAGAGAACAGTAGAGACACTGTGTTCCAGAAGGAGCGCTTTAAGATCGACATGCCGCATCGCTTCAAGAGCCACAACTACATGAGCCCTACCTTCTGTGACCACTGTGGCAGTATGCTGTGGGGAATGGTCAAGCAGGGCATCAAGTGTGAAGATTGTTCCATGAACATCCATCACAAGTGTCAGAAGAAAGTGGGCAATCTCTGTGGAATCAACCAGAAACTTCTGTCTGAGGCCCTCAaccaagttagccagAAATCCATAAGTAGGTCTGAATCCAACAAATCCGAATCAACAGACATTGGAATCTACCAGGACTTCAACAAAAGCCCAGGAGCGGACCCTAGTGaAGCCAATGAGAAGTTGTGGGAGGGTGGTAAGGTCCCTGCCCCCACCAACATCACCCCCACGATCCACCTCACCATCGATGACTTTGTGTTCCACAAGGTGCTGGGCAAGGGCAGCTTTGGCAAGGTCCTGCTGGCTGAGCTGAAGGGGCGAGGGCAGTACTTTGCTGTGAAGGCCCTGAAGAAAGATGTGGTTCTGATGGATGACGATGTGGAGTGTACCATGGTGGAGAAGAGAGTCCTGGCCCTGGCCTGGGACAACCCCTTCCTCGCACACCTCTACTCCACCTTCCAGACCAGGgAACACCTGTTTTTCGTGATGGAGTACCTGAATGGAGGGGATCTGATGTTCCACATACAAGATAAGGGTCGCTTTGATCTCTACAGAGCCACGTTCTACTCAGCAGAAATCGTAATTGGACTGCAGTTCCTCCATTCCAAAGGAATTATTTACAGGGACCTGAAGCTGGACAATGTGATGCTGGACAGGGACGGGCACATTAAGATTGCTGACTTTGGGATGTGCAAGGAGAACGTGTTTGGAGAGAATCGGGCCACCACTTTCTGTGGGACACCAGACTACATCGCACCAGAGATCCTGCTGGGACAGAAGTACACCTTCTCCGTGGACTGGTGGTCGTTTGGCGTGCTGGTGTATGAGATGCTGATTGGCCAGTCGCCATTCCAGGGTGATGACGAGGAAGAGCTCTTTGAGTCCATCAGGATGGACGTGCCTCACTACCCTGGCTGGCTCACCAAGGAGGCCAAGGACCTGCTGGAGAGGCTGTTTGAACGAGACCCTAGTAACAGACTAGGGGTGGTGGGGAACATTCAAGGACACTCCTTCTTCAAGACCCTCAATTGGCCTGCCCTGGAGAAGAGAGAGCTGGAACCCCCCTTCAAACCTAAAGTGAAAGCGCCCAATGACTGCAGCAACTTTGACCGGGAGTTCCTGCGTGAGAAGCCCCGCCTCTCCCACGCGGACAAGAACCTGATTGACTCTATGGACCAGGCGGCCTTTGCAGGCTTCTCTTTCATCAACCCCAAGATGGAATGCATTATGGTCAATTGAAGGCACAACATgattcctccatctatccattATAAACATATAaacggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagagagagaccagtataGCATTTATCACTGTGGTGGGTCCAATCAATAGTGGTGTCATTCTTTTCCTTGTGATCAAATATTGAATCAATATGAATCAGTCCATATACTGTACTTTATCCCCCAACAACACTTGCACCACCCCATAACTCAGACTGTTGTTTAATATTTTGCATGCTGGGAAGTCGGGGATCAAATGTGGCTCTATTATCACACCCCTGTGTGCCCTACCTACTGTCTGTCACTCTTTCCTGTCCTGATCATTCACATAATattttgtgtgtctgtgcgtgtcagCACTCGCTGTGCGTAAATGCATAAATGAATGTGTCTTTGTGAGTGACAGCATGAATGTCTAGTATTTCCCCCTAGCTGTAGCAGTTACTCTGATTTGGAGTCACATGTTGGTGCCAGTTATGAATTGTCTATAATGAAAAAAAAGTTTGTACTTTTTCAGGTACAAAATGAATGGGTGCTGCATACAAAATCTTGTTGTATAATACCCAAGAAACAGGACCAGTAGAGAACGCACAGATGTATGCTGGCATGGATAGTCTCATTCCCCTCTCACCGTGTGGATCTAGCTGCCCATCCACACGGTATAAAACTAAGGGTTTGCAACCAGTACTGCAACTTCCCCACTTTCCTGAACCAACTGCAGCTACTCTGATTAAGACCTGAGTAAGTGTGAAACAGAGTGGAACATCTTTCTGAAGGGAGTAAGTTTAATGGTACTACACGGTGTGTCGTTTTGAAGGATATGGGTGTGTTGGGGGGTATTCCATTGGCAAAAGGATGGATAATTGGGTCTTGTGTTACTTGAAAGTATTGTCAGAGGCATCATGCCCATCGGGGGCACAAGGACACGTGCCTCCTCACGTTACATTATTTACTAAATAACATTATTTACTAAATATCATTTTTAAGCCAAtcgttcaaatgtatttataaagccctgttttacatcagccgatgtcatgaagtgctgtacagaaccccagcctaaaactccaaacagcaagcaatgcagatgtagaagcacagtggctaggaaaaactccatagaaaggcaggaacctaggaagaaacctaaagagcCCACATATTTTCatcattatttataaaaaaagaTCTGTCAGCTGTATGTTGCGGAGGGGCCACAGAGTCTGGACCAGTAAGTGGCTCCTTCCAAGGTGCATTGCGGACCAAAGATATGCGTGCAGAGAGTATtgtcagtggaggaggagagtaTCGAGTGAATCACAGTTGATTTTTACTGCCGGTTTATCGGCAGGTCTCACAGGAGCTATGTATGAAAATAATTTTGATCACGCTATGTAGCCAATTGATTAATTCTTGATAAGTAAATAAAACACATGTttggttgtttctctgtaatactagccacctagcaattttatgaagttgactttagctagccagctacagtGCCCtttgtaattattgggacagtgaagcgtGTTTTATTATGAATAGTTTCCTAATCTCCCAGCCTCATAAATAGATTCccagccatttcaggctatcagtcaagttagagtagcttgtctaactatcttagctgacatgtctgctggcaaggttgctagactttagaaaatacaaaaatagcTTTAATTCTTGGGTTATGAGACTATATACCAGTGTGGCAGTTTGTACTAAACTCTTAAGATATATAAAAGTTCTTAAAGAATCAATGTGCATCATTAATTAAAATTACAATTAAACCGGTTAGGGGTATGGTTAAATAACCTatgcaaaaaaatataatatatttacatAGAATTAGGCATAAcaattatggctctagattgcaggaaaaagctgtttcaggtgtttgaaaaatgctacTCTCCAACTTGTCAGAAATGGTCAGAATTCCCACCATCCATCTTCATGTACTATATCACCCCTCTAAAATAATGGGTGCATGAGGCCCCTGGTATTGTAACAAGAAAATAATAATATGCTGGATATGAAATGAAAATGTTGATTGCCCTAAACAGACACAATATTTATAAAGGATGTACTTTTTTACTGTCTTCATATTTTACATCTGAttataaataaacacatttttatttatggTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702834 lncRNA downstream 41131 49298645 ~ 49301227 (-) True G617650
TU702820 lncRNA downstream 74225 49205572 ~ 49268133 (-) False G617637
TU702818 lncRNA downstream 74225 49264855 ~ 49268133 (-) True G617637
TU702807 lncRNA downstream 150800 49191356 ~ 49191558 (-) True G617628
TU702799 lncRNA downstream 160787 49180790 ~ 49181571 (-) True G617621
TU702920 lncRNA upstream 56368 49414126 ~ 49414400 (-) True G617730
TU703079 lncRNA upstream 184995 49542753 ~ 49542966 (-) True G617875
TU703080 lncRNA upstream 185269 49543027 ~ 49543236 (-) True G617876
TU703081 lncRNA upstream 185562 49543320 ~ 49543686 (-) True G617877
TU703082 lncRNA upstream 186345 49544103 ~ 49544412 (-) True G617878
XM_036983434.1 mRNA downstream 7428 49317584 ~ 49334930 (-) True LOC110528962
XM_036983436.1 mRNA downstream 24827 49303156 ~ 49317531 (-) True LOC110527953
XM_036983435.1 mRNA downstream 24828 49303156 ~ 49317530 (-) False LOC110527953
XM_021609597.2 mRNA downstream 24832 49303156 ~ 49317526 (-) False LOC110527953
XM_021609600.2 mRNA downstream 45053 49295040 ~ 49297305 (-) False mustn1b
XM_021609604.2 mRNA upstream 31279 49389037 ~ 49433382 (-) False LOC110527956
XM_021609605.2 mRNA upstream 31279 49389037 ~ 49433382 (-) True LOC110527956
XR_005052595.1 mRNA upstream 302264 49660022 ~ 49936559 (-) False LOC110527961
XM_021609612.2 mRNA upstream 302264 49660022 ~ 49936575 (-) False LOC110527961
XR_005052596.1 mRNA upstream 308694 49666452 ~ 49936562 (-) False LOC110527961
TU702832 other downstream 45110 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 146388 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 156262 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 156903 49184424 ~ 49185455 (-) False G617624
TU701964 other downstream 813190 48487047 ~ 48529168 (-) True G616880
TU703492 other upstream 302277 49660035 ~ 49936281 (-) False LOC110527961
TU704151 other upstream 946690 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1598513 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 3947778 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 5714721 55072479 ~ 55075396 (-) True G625426

Expression Profile