RNA id: XM_021609604.2


Basic Information

Item Value
RNA id XM_021609604.2
length 6558
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110527956
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49389037 ~ 49433382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCGCCTCCGGTATACTTCGCGAGCGCACCAGTCGCGCATCAGCTAAAGAAAAGGGATGCCGGCTCTGTAGGCAAACAGCTACTACCTTGACAGAGTAGTAGCCAGTACTTGGAAAAACAACCAGAGATGTTGAATTTAGACCACTTGAATACTTTCAACATGAATTTGGGATAAGTTCACAGAACCTGTGGACATATTGTGGCGGTTGATTCCTGCGTTTGAAAAAAAAACACGTGGATAACTCTCGGTTGCTATAGCGGATGATGTCCCAAAATGAACACAGATTTACAGAAGCGACTCCAAGTTCCCCGGCCAAAGATCCGGAGTCACCTAACGATCAAGGTGCAGTCCAAACTGATGTCAAAGCCTTGTCCCTCTACCCGGGGTCCCAAACTTCCCACCGCTGCAATGCCCAGACCCTCCTCATctgagacagaggcagaggaaGAGCAATGCCCCCCTCACGGTTTGAGCAATGGAGACTTGACCTCCTCAGAGGGGGAACCTAAGGACCACCAGGAAGGGTCAGAGGACCCCATACCCCACTCCACAGATCACAACCAGGAGGAAGCAGCAACAGAGGAAATCCTTAATGACAATGGCATCACAGATTATGGTGAGAAGGAGAATGAGCAGGAGGgggatgagatagagagagagaacaatgcaTCTGAAATGGGAAACACTGGTTCATCTGACACTCACATTGCTGCCGAGGAGATAGACTGTACTGCAGCAGATGACTTGAACCTACCTGAGAGTgaaaatgtgtttctgtgtgagagaggagatgaggaaagggGGGGAATCAAAGCGGAGGAGGAAGATAATCAGAGTTTAGCTGAGGAGACTGAAACATCTGATAAACCTATAGGGTACCCAGAAGAAGATGTTGAAGAACCAGACACCGAAGATCATGATCATGGGACCACCCCTAGTCAGCCTGCTGCAGACACTGACATTGGGCTTGGAGAGGAAGTCAGCTCACCTGGTGGTGAATATTTACAGTGTGAGGTACCCACTGATGAGGCTGAAGAGGAAGCAGAGGATCTCTTACTGGGAGCACACTGCTGTACACTCCCACCCGTCGGCGAGGAGTATCCCTACGATGTGATTGGCCCCTCAGATGAGCCTGTTTACACATGTGACACTGGTGAGCCCGGTGACACAGGTGTGTGGCAGCCTGAGCGTGCCACCAAGGACCCCTCTGGCCATTTCCGTTTCTCTGGCAGCACTGAGGATGTGTTTGGGCCTTACTCCGTCATCGAGGCAGTGCCTGCTGACAGGATGAGCGCCGCCTACCCTGAGGTGAATCACGATGATACATTCTGTGGTGACAAACCACACACTGCAAAGGAGATGGACACAGCAGGCACCTCTAACCAAGAGCCTTATTATTTGTCATCAGACGATGTGGAAGAGCTAGAGGTTAaacggagagagagtgaggtccaGGACACTCCTGAACAATCCTCCCAACACATAGAAACAGCCATAGATGATGTGGATGAATACGCAGATATCGATGACTCCCTCTGCCCTGAGGCACATGACTTTCAGCAGCTGGACGGTGCCTCATCAGAGGACTATGTGGAGATTGGGGACGATGATGAGACGGATGACACGGAGAGGAAGCAGATCAGAGGGAGGAGTGTGAGCGAGAGAACAGCCAAGCGTGAGCAGGCTTTCTCCAGCCAGCGGAACAGCTGCCAGCCCCGTCTCAGGCTGTGTAACATCACAGTGCCAGCAGACCTGGACCGGACACGGACCCCAGAGCTCACCAATAGGGTGGTGTTTGCCCACACCACAGAGGCCTTCGAGGAGGACATAGAGGAGCTAGACTGCCACATCGTACCTTATCACGATGACTCAGACTCAGACAGCGAGGAGCACATCTATGAGGAGGCCGGCTTTGACTCTGAGGGGGAGAACTTTATGTCTCTGGACCGGAAGAGCATTGTGACGCGGTCGCGCTCCTACTCTGGGAAGGTTTCGGGTTATGTCCCTGAGACAGTTCCTGAGGAGACATCAGAGTACCAGAGTACTTATgactactgtactgtggccttagACCAGGACGGAGAACCTCTGCGACGTCCTGAGCAGCCTGAGGTCAACAGACTCATCCCCTCTCTGAAGCCACGCCCCTTCTTACTATACCCAAACTCATACTCCGCAGAGGGTCGAGAACTATCATTGGGAGCTCACATAGAGGCCGACCAATCCCTGAAGGATGATGGCAGGATGAAAAGGACAGATGACACCCTCTCTCTGCCATGTTTTAGCACTTCTTCCGGAAGCTTCTCTCAGCGGAGCCACCAGTCGTCCAGCGATGTCTCCATGCCAACCTCTCTGGTGGACATCCCACCTCCCTTTGAGCTGGCTTACATCACCAAGAGACCGGTCACTAAGAGCTCCCCATCCCTCCTGATCAGCGTCTCTCCTGAGTCCACAGACAACAAGCCCAAGAAGAAGAAGTCCTCATTCAAGCGCTTCCTGACCCTGAAGTTCAAGAGGAAAACGGACACTAAAGGCTTTGGTGACGGGAGCATACGCTCCTCGCGCTCCTCCTCTGAGTCCAGCCACCATGGCCCAACAAGACTCCTGGAACTGGAGCGCAGGAGCACTGGCTCCCCTCAGTCCCAGTCTCGTATGGTGAAGCCCCAGCAGCGCCCTCCAGACCTTCCCTCCACCTTCCTGCTCTACAAAGACCTCAGTAAAGAAGACCCTAAAGCCTATGGTAGCAGGGGCGTGTCCAGGGTGGAGTCCTTCGAGGAGCGCTCCCGCCGCCCACTCATGCCCCTCCCCCTGACCAAACCCCGCTCTATCTCCTTCCCCAGTGCAGACACGTCTGAATATGAGAACATCCCAGCTATGAGCTCTGACTATGAGAACATCCAGATCCGTCCTGGCGGGAGACCTACCAGATCCATGAAAGTCACAGATTTCTTTGAGGACCCCAAACGCATAGTGGCCCCCTCTAATGACAACGATGGTTATGTGGATATGAACAGCTTCCCTGGGATCGACAGCAAACCCCAGTCACCTGAGCAGGAGCCTGAgagTGCCTACACAGAGCCTTTCCCAATGAGCGATACTCTAGCGGGGCTCTCAGCTGAAGAGGACCATGGACTCacctcagaggaggaggagggaggagtggagcacGGCTTTGACAAACAGATTGATGGACGATCCAGAGCCTTCTACGTCGCCAAAGAGCTGGTGGACTCTGAGAGACTACATGTAAAGGCCCTTAAGCTCCTTCAAGAGGACTTCAGGGCAGCAGTGTCGGAGGCGGTGGGGGAGGATGGGGAACCTGTGGTGGAGGAACAGAGGCTGGGGGAGATACTGGGCACGCTCCCTGAGGTCTACATACTCCACagcaacatcctcactgagctgGACTCACGCATCAGACAATGGGAGGAGAGCCAGAGGGTGGTGGATGTGATCCTGTCTCGACGGGAGGAGTTTGCTGGGTTTGCTACCTACATCTCTGAGTATGACCGGAGCATGTCCCTACTGGCAGAGAGCTGCAAACTCAACCCTGCCTTCCATGACATCGTCAAGCAGTTTGAGaACCAAGGTCCAGATGGAGCTCAGGTCCAATTGAAGCACCAGCTGCTGCAGGTCATTGTGAGAGTCCTCCAGTACCGCATGCTGCTCACAGATTACTTAAACAACCTCTCCCCTGATTCAAAAGAATATGAGGATACACAAGCTGCCTTAGTCATCGTTTCAGAGGTGGCAGACCAGGCTAATGAAAATCTCAAGCAAGGGGAGAATTTGTTGCGGCTGGTTCACATTGAGTACAGTGTCAGAGGCAAGAGAGATCTACTCAAGCCAGGAAGGATGTTTGTGAAGGAAGGCACTCTAATGAAAGTTTCCAGGAAAAGCAGACAGCCCAGACACCTATTTCTGATGAATGATGTGATGCTGTACACCTATCCTCAGCAGGATGGTAAATACCGGCTGAAGAACACTCTCTATCTGTCTGGGATGAAGGTCAGTATACCCGTCATAGACAACGTGCTCAATGCCCTGAGGATCGAGGTGAAGGACGTCAGCATCACCCTGTCAGCCAGTTCCTGTGGTGAGAGGGAGGACTGGTTCCACACGCTGAGTCGGGCCATAGCAGATCATGCTGCAGGCCTATGTACTTTCGGTGGCCTCTGCAGTGAGGCACGTGAGAAGCTGTGGATGGCCCTGGGGGAGGCAGCTCCAGTGCTGGTGCCCGTGACTCATGTGATGATGTGTATGAACTGTACCTCCGACTTCAGCATGACCCTGAGACGCCACCACTGCAACGCCTGTGGgaaggTGGTGTGTCGTGCCTGCTCCAGGAACAAGTATCCTCTGAAGTACCTCAAAGACAGGGTGGCCAAAGTGTGTGACCACTGCTATGCTGAGCTCAGGAAGAGAGGTGTCAGTATCTCAGGGGCGTGTGGTAACTCCAGCCCCTGCACCCACCGGGCCAGTCGGCCCCTCTCAGCTGTGTTCCAGAGCTTCCAGCCCCCAAGCCTGTGGAGGAGCAGGAAGAGCACCTCTTCTCTCAACCAGGTGGTGTTGGGGGCTGAGGGCTCGGCCATGAGTGGCAGCCTGCAGCGGCGTAAGAAGAGCAAGAGGAAGTGGAAGAGGCTGTGGTTCCTCCTCAAAGACAAGGTGCTCTACACCTTCACAGCACGTGAGGACAAGATGGCATCTGAGATTCTGCCCCTGCAGAGTTTCACAGTGAAGCTGACAGAGAGgccggagggagaggagagctccAACATGTTTCAGCTCTACCACAAGAAGACACTATACTACACCTTTAGAGCAGACGATCAGCACACTGCCCGCAGGTGGGTCAATGCCATGGAGGAGGCCACAGTGTTATAACACCTGCCTGTCTGCACAGACCAACGCTGCCTGTGCATCGCCTATCgacccactctctctttcctggtGTCTTCTGCGCAAAACCATCCTTGACAAGGCTGCCATCTACAGGCAGAAGGGCATACATGCAGACCATGTGTGGGGAAAACATCCAAGAGTGAGCCTCTTTAAGGTGAAAACCTCTCAGTCGAGTACAGTGTATACTCAGACTGGGTCAGTTCCAAACTCACTGCAGGACTTTGTTTGGGTCAGCAGTGGCGAACAGGACCCTGAAGAAGGACGAAACGTTGGTTGCTAGACCCATTAAATGTTTGGGAGCATAATTAAAGTGTTTGACTTTCTTTTAACACAAATCTTCTGAGGAAATACATAGAGCCAGCTCAAGCACACACAGGTCCCTGTGTCAAAAGACCACAACTGCATGTCACAACTGTAAAACTCCTAGACAATGTGTATCAAAATGTTTGATTGACAGCCTTCAGTGCCAGTGCACATTCACACACTTGTCTTTTCTGACACTCTTTGTCTACCATGAACTTGTACATGGAACAACTTTGTATGGGTTCTGTTTTGGATAGTGCACACCACTGTACAAACAATACCAAATCAAAATGCTGTCCTACCATGGCAAAACGCAGTAACTACGTCATTTTTCTGAAatgctaaaaatatatatatcgaGACAGACTGCAATTTCGGATATTCCTTGATATATTTTGATCAACTGGCTTGTTCATGTGTCAGGAAACGAAATAACACATTAATCAGATAATACATCTGGCCATTAAAACAGATCAACGATTTTTGATCAGAATTCATAGTTACTGCGTTTTGCATTTGTCGGGCAGTATTAACAACTTTGGTATTGTATGGAGACGTTTATGTACTGTAAGAGACGCATCGTATTTTAAATATAGTGTAATATTCCATTCACACATTTTGAAGTGAGGTATATTAAGTATTTGTACAGCAATGTTATTGTATGATGTTACAAGCGAAAGCCATTTGAATCATTATATCTTGTCCAATGTACTCTCTGTGAACATACTTATTTTACACCACAGGTGTGTAATAACAATgccagaatgtgaaatgttacagACAGTTTTAGTATTATTCAACAAAAGATCATCTTGAAGTATATTTCATAGCTGAATGTACAGTTTCTGAACCTTTTCTGAAAGGGTGGTTACATTTTTGAAGTGCCAACAGTTTCCATTTGAATGCCATGCCATGTGTTATGGCTAAACAAATGTGCATATATCAAATGATAGTCTTTATGGGAACGGCTGAAAAGTAaatggttaaacaaatcaataaatATCAGTTTTAGCATCAAACCGAGCGCTTTTCTTTGATGCTGATGATGTCactcttttttcctctctcttctaaTTCTCCTTCTTTGAGAACATCAGATATTAACAGACTATCCCTGTCAGACTTGTCAGACTACATTTTATTCTAGTCAAAAATGCAACCAGTCGTGCACATCATGAGTACATGTATCTACACTCGGTCGACACGTTTAGTCTTCACACCTGGGATTATGGGTTATACCAATAGTATTATGAGACTGTACCTCTAACATGGCGTTGCATATAGCACAATTTAAATGttgatgtacagtatacagttAAACAATTACAATAAATAAACTCATCAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702834 lncRNA downstream 87810 49298645 ~ 49301227 (-) True G617650
TU702820 lncRNA downstream 120904 49205572 ~ 49268133 (-) False G617637
TU702818 lncRNA downstream 120904 49264855 ~ 49268133 (-) True G617637
TU702807 lncRNA downstream 197479 49191356 ~ 49191558 (-) True G617628
TU702799 lncRNA downstream 207466 49180790 ~ 49181571 (-) True G617621
TU703079 lncRNA upstream 109371 49542753 ~ 49542966 (-) True G617875
TU703080 lncRNA upstream 109645 49543027 ~ 49543236 (-) True G617876
TU703081 lncRNA upstream 109938 49543320 ~ 49543686 (-) True G617877
TU703082 lncRNA upstream 110721 49544103 ~ 49544412 (-) True G617878
TU703095 lncRNA upstream 135443 49568825 ~ 49569059 (-) True G617891
XM_036983439.1 mRNA downstream 8353 49342358 ~ 49380684 (-) True LOC110527955
XM_036983441.1 mRNA downstream 8354 49342358 ~ 49380683 (-) False LOC110527955
XM_036983440.1 mRNA downstream 31279 49342358 ~ 49357758 (-) False LOC110527955
XM_036983434.1 mRNA downstream 54107 49317584 ~ 49334930 (-) True LOC110528962
XM_036983436.1 mRNA downstream 71506 49303156 ~ 49317531 (-) True LOC110527953
XR_005052595.1 mRNA upstream 226640 49660022 ~ 49936559 (-) False LOC110527961
XM_021609612.2 mRNA upstream 226640 49660022 ~ 49936575 (-) False LOC110527961
XR_005052596.1 mRNA upstream 233070 49666452 ~ 49936562 (-) False LOC110527961
XM_021609615.2 mRNA upstream 846229 50279611 ~ 50300137 (-) True LOC110527963
XM_021609616.2 mRNA upstream 866982 50300364 ~ 50306278 (-) False LOC110527964
TU702832 other downstream 91789 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 193067 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 202941 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 203582 49184424 ~ 49185455 (-) False G617624
TU701964 other downstream 859869 48487047 ~ 48529168 (-) True G616880
TU703492 other upstream 226653 49660035 ~ 49936281 (-) False LOC110527961
TU704151 other upstream 871066 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1522889 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 3872154 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 5639097 55072479 ~ 55075396 (-) True G625426

Expression Profile