RNA id: XM_021609606.2


Basic Information

Item Value
RNA id XM_021609606.2
length 1885
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110527957
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49473526 ~ 49487883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggacgtcccaaggatctcGGATTGCATTGTCCATCCCACTCCGGTGTCTGAGCAATGCATTGTGGGTAGCTATTTGTCTTCCTGGGCACGAAAATGGCGGATACGGACGAGCCGGAGAAGAAAAGAAGGAGAGTAGTGGAGCTGACTGAGAAGATGGTGGTGGATGGGGGCAGCAGAGACGGGGGCGAATGGGACGGACGATGGAACCACATCAATACGTTTCTGGAAAGACCAGGACCTTTCACTCACCCTGACTTTGAGCCGAGCACAGAGTCGCTCCAGTTTTTGTTAGACACCTGCAAAATACTTGTTATTGGAGCAGGTGGCCTTGGATGTGAACTTCTCAAAGATCTGGCCTTGTCAGGTTTTCGTCACATACACGTTGTTGACATGGATACCATTGACGTTTCCAACCTCAACAGACAGTTCCTCTTTAGGCTGAAGGATGTGGGTCGGCCAAAGGCAGACATAGCAGCGGATTTTATCAATGGACGCATTCCAGGATGCAACGTGGTCCCCCATTTCAAGAAAATACAAGACTTTGATGAGTCGTTTTATAGACAATTCCACATAATAGTTTGTGGACTCGACTCCATAATCGCCAGGAGATGGATGAATGGCATGTTGCTGTCTCTGCTGGTTTATGAAGACGGGGTGCTGGACCCCAGCTCCATCATCCCGCTGATTGACGGGGGGACAGAGGGCTTCAAGGGAAACGCTCGGGTCATCTTCCCTGGCATGACTGCCTGCATCGACTGCACCCTGGAGCTTTACCCACCACAGATTAACTTCCCCATGTGTACGATAGCCTCCATGCCCCGGTTACCAGAACATTGTGTTGAGTATGTCCGCATGCTGCTGTGGCCTAAAGAGAAACCCTTCGGAGATGGTGTGGGGCTGGACGCAGATGACCCGGAGCACATCCAGTGGGTGTACCAGAAGTCTCAGGAGCGGGCAGCAGAGTTCAGCATCACAGGAGTCACCTACAGACTCACCCAGGGTGTTGTAAAGAGGATCATCCCGGCTGTGGCGTCCACAAATGCAGTCATTGCTGCTGCTTGTGCCACGGAGGTCttcaaaatagcatcaagTGCCTACATTCCTCTGAACAACTACATGGTGTTCAATGACGTTGATGGTCTGTATACCTATACATTTGAGGCAGAGCGAAAGGAGAACTGTTCATCCTGCAGCCAAGTCCCCCAGGACCTGCACTTCTCTCCCTCAGCCAAGCTCCAGGAGGTGCTCGATTACCTGACTGAAAACGCTTCTCTACAAATGAAATCTCCAGCCATCACTGCGACATTGGAaggaaaaaataaaacattgtatTTGCAGACTGTCGCGTCAATTGAACAGAGGACACGCCCCAATCTGAGCAAGTCACTGAAAGAGCTGGGTCTGTTAGATGGGCAGGAGCTGGCCGTAGCTGATGTCACCACTCCCCAGACTCTGCTCTTCAAACTCAGCTTTACCTCTTAGGACCAGCATGTTCTCCCCAACATCAAACACCAGACGTCTTTGTTATTACTTTTCTAACAGAGTACCGAGTATTTGAAACATGTAAACATGAAGTTTTACAGTGTATTTAAgtgaatatgtaaataaatgtatttcatatCCAGTTCTCTGACATACTTATAGACTCAAGTCTATGAATGCATTTGGTTGTGGAAAGCCAAACTACTCCACTGTCATATTTGATCATATCTGCAACTGTTTGTGATGCATTTGCGTTATATGCACTGCAACCTCTCAAGCTCTCTTACACTGGAGAAAAAAACAGTACCATATTTAAATTGATTTCTCTTATAGTTTCTTGTGAGTTTAATTTATTTTCATTTCACCCAGACACAACCGGAATAAATGTTTTCCTGTACAATA

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016881 acid-amino acid ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702955 lncRNA upstream 21266 49451892 ~ 49452287 (+) True G617763
TU702596 lncRNA upstream 34561 49438785 ~ 49438992 (+) True G617447
TU702519 lncRNA upstream 128830 49342377 ~ 49344723 (+) True G617383
TU702484 lncRNA upstream 172319 49298610 ~ 49301234 (+) False trnae-cuc-4
TU703006 lncRNA downstream 52053 49539936 ~ 49540434 (+) True G617811
TU703007 lncRNA downstream 76958 49564841 ~ 49565246 (+) True LOC110527959
TU703094 lncRNA downstream 81069 49568952 ~ 49569390 (+) True G617890
TU703187 lncRNA downstream 160218 49648101 ~ 49648349 (+) True G617976
TU703204 lncRNA downstream 172158 49660041 ~ 49661400 (+) True G617993
XR_002474075.2 mRNA upstream 87421 49384302 ~ 49386132 (+) True LOC110527119
trnae-cuc-5 mRNA upstream 167979 49305503 ~ 49305574 (+) True trnae-cuc-5
trnae-cuc-4 mRNA upstream 174976 49298506 ~ 49298577 (+) False trnae-cuc-4
XM_036983433.1 mRNA upstream 286584 49172531 ~ 49186969 (+) False LOC110527950
XM_021608235.2 mRNA downstream 27290 49515173 ~ 49534053 (+) False nhe3
NM_001130995.1 mRNA downstream 27460 49515343 ~ 49528797 (+) True nhe3
LOC110527958 mRNA downstream 49306 49537189 ~ 49549801 (+) True LOC110527958
LOC110527959 mRNA downstream 61928 49549811 ~ 49565203 (+) False LOC110527959
XM_036983443.1 mRNA downstream 83907 49571790 ~ 49620194 (+) False tafa4b
TU702226 other upstream 646326 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 1633831 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 2835599 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 3194220 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 5445325 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU703098 other downstream 84437 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 98987 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 815547 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 1472611 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 2903465 52391348 ~ 52391633 (+) True G621650

Expression Profile