RNA id: XR_005052595.1


Basic Information

Item Value
RNA id XR_005052595.1
length 2487
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110527961
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49660022 ~ 49936575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgctctccctttcgCTCTCTGGCTGGGCTGTATTGTAATACACATATAGACACTACTTAGTGCTTTGGAAAGAGGGTTGAGCCTCACACAGACAACCAGAGCAGCTTCTCAATGGGGGGACGGAGCCAAGAGGAGACAGAACTATCGTTCCGCTGGAGCCAATCTCCGTCCGTGTCTGAGAAGTGAGGAGGCAAATTAACTCCCTGTCGTCACGAGAGGGCTTTTATCCTCACAGTagtaagaagagagagaaaaggaagagggagaaagaaggagagaaaggagctGCTGTCTGCGCTGATATAAAGGTGACCTGAGCAGCTTTCCATCCTGTAAACCCTGGCTAGTTTGTGACAGAGTGTCGTGGCTGTGAGCTGAGGAGGTTTCTGGTGACTGCACTCTCAGGATTTCAGACGGACAGTGAGAGGAGGGAGCCGAAACAACAGAGCTCCTCACCCTCTTATCCTGCAGCGCTGTGctcatttacacctggatctttGTTGGGAAACCCTGGCCTCAGACTATGGATGGATTTAAGACAGTGTTGTGAGTCTGTTGGACAGACGGTGATACCGACAGCCGGGCTCTTTTTCTTCTGACCAGACAGACCACTCAGCTGCTCTGCCATGTCCTGGTTCCTGGGCCTGTGGATTAGCCTAGGCTTCCTGCTGCTGTGCCAGGCCACACTGTACGAGACTATCCAGCAGCACCACGTTCCGCGGCCTGGACGCAATGCCATACAGATCCTGGaAGGAGGGACGTGTGAGGTGATCGCAGCCCACCGGTGCTGTAATAAGAACCGTATCGAGGAGCGCTCCCAGACCGTCAAGTGCTCCTGTCTACCCGGAAAGGTGGCCGGGACGACACGCAACAAACCCTCTTGTGTGGATGCGTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCGTgtctggagggagaggagtgtaAGACTCTGCCTGATAACTCTGGATGGATGTGCTCCTCTGGGAACAAGATCAAGACCACAAGGAACACTGCGCCATACTCACCTTTTTAGCTCTGGAAGCAAAATGCAGAGGATGCTTCAACAGAAACTGAGCTGCATTCTTGCTTCTGTAAAGATTCACCCCAGGACCTAACAAAGAGCTCCCTTGCAGGCTCCGAGCCAGGATCCCCTCCCTCCGAACGGACTAAAACTATTACATCAACTGGATTACCTGTGACTGCAAAAAAAGGATATCCTCCTAGATAAAACAGCTTCGCTCGGGTGGTGCCAAGGATTTTAGACCAGACTAATCCCTTTTTGATCAATGAGCCTCACGTCGGGACTCTCCTCCACAACAACCACGGCCAATTTCCTACATgctctttttttctccctttcGAAACTAAAACAGCTTAGCAGGGGTTATTTAGAGGTTGTAAAAACGTTATTTGAAGACACTAACGCCTCCCCAAAGGTAAACTGTATTATCCTCACTGAGCCTCAGTGCCACTGAGCAAGGGATCCTACAGGATCAGTGGCACGTTGGAGGGACATTATGTGGGGATCGATTGAACCTTTTTCAATAATCCTTGTCATCGGCGTCCATCTTAGAAGCGACATCTCAGCATGCCAGCTTTGTTGTGACTGTGCAGAGCCTGGGCAGTGACCCTGACTGCTGTCGACTCTGCCTACGCAACGCAATACCCacaggaacaacaacaacacagcgcTGATCAAACAGACACTCAGAGGTCACAGGGGTCAACCCAGGGGCCCATAGTCACTGTCCATGATTGACATGTCATTCAGAACTGTTCTTTGTTGGCACATTCTATGTAATTCATTGGAGCTTTTTCTTTGTACATAAtatacttgtgtgtgtatatatactgtaaatacaggATAAAAAAGGCAGTTTGAGGGCTCTCTTATACAGTAAACATATCCTGCAAGGAGATCCTTCCATGGAATTCTTCAGTTCTATCCCTGATTATGAAGTACAGTGAATTCCTAGTCAAAGGTAGTGGTTGAATATCCTCTCTGTGTATAGGACTGTTTGCAGTGTTTGATTTCATTGAGGATCTCTGGAATAGACTTTGCGGGACCATAATGAGAAAGTATTGGTCTCATTCACCCTTCAGTGATGTGCTTGGAAAACAGGAATCCCTGTGGCTTCTGTAAAGATTATTAAACCACTGTACAGAACTGCCTCACAAAAGAAACAAGCATCAACAGTGACCCAAGTCCTCTTTTTTTGTTATAAATTATAGATAACAACAGTGCAACTGGGTCCAGTATCTGAGACTTATTTTATGTCCTGTGTCTGCTATTGAGAATGGTTGTGGACTTGACTTTGCTTGTTGTGCGTAGAttccacactgacacactgaaagACTTCCCAGTGGATATTTAGAAAAATACATAGAGAAAGTATTGGACACATTGAACAGACATGCAGTACCTTCACTAGATAAACATACAGTCTTATCAGAATTAAAGGGGTTTTCTATAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU703174 lncRNA downstream 19917 49639469 ~ 49640105 (-) True G617964
TU703170 lncRNA downstream 23209 49636365 ~ 49636813 (-) True G617960
TU703153 lncRNA downstream 38411 49621346 ~ 49621611 (-) True G617943
TU703095 lncRNA downstream 90963 49568825 ~ 49569059 (-) True G617891
TU703082 lncRNA downstream 115610 49544103 ~ 49544412 (-) True G617878
TU703987 lncRNA upstream 156043 50092602 ~ 50092970 (-) True G618748
TU704107 lncRNA upstream 297542 50234101 ~ 50234383 (-) True G618866
TU704108 lncRNA upstream 298057 50234616 ~ 50234831 (-) True G618867
TU704150 lncRNA upstream 363916 50300475 ~ 50302162 (-) False LOC110527964
TU704153 lncRNA upstream 376278 50312837 ~ 50313066 (-) True G618912
XM_021609604.2 mRNA downstream 226640 49389037 ~ 49433382 (-) False LOC110527956
XM_021609605.2 mRNA downstream 226640 49389037 ~ 49433382 (-) True LOC110527956
XM_036983439.1 mRNA downstream 279338 49342358 ~ 49380684 (-) True LOC110527955
XM_036983441.1 mRNA downstream 279339 49342358 ~ 49380683 (-) False LOC110527955
XM_036983440.1 mRNA downstream 302264 49342358 ~ 49357758 (-) False LOC110527955
XM_021609615.2 mRNA upstream 343052 50279611 ~ 50300137 (-) True LOC110527963
XM_021609616.2 mRNA upstream 363805 50300364 ~ 50306278 (-) False LOC110527964
LOC110528963 mRNA upstream 572914 50509473 ~ 50540585 (-) False LOC110528963
XR_005052597.1 mRNA upstream 1000650 50937209 ~ 50939964 (-) True LOC118965294
XR_005052598.1 mRNA upstream 1150730 51087289 ~ 51091164 (-) False LOC118965295
TU702832 other downstream 362774 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 464052 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 473926 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 474567 49184424 ~ 49185455 (-) False G617624
TU701964 other downstream 1130854 48487047 ~ 48529168 (-) True G616880
TU704151 other upstream 367889 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1019712 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 3368977 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 5135920 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 5227933 55164492 ~ 55172200 (-) False G625472

Expression Profile