RNA id: XM_021609615.2


Basic Information

Item Value
RNA id XM_021609615.2
length 2742
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110527963
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50279611 ~ 50300137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTGGTACCTTTTCAATAGATAAAGTTGCAACATTTAACAAATGTAGCTAGCAAGTTGACATGACGTCACTGAGTAAGGACATTCTAGTGACCTGGGTATTGAAAGATGGGACCATCAATGTCGGTCTGCATAAAATATAAACGACCAGAATCGATTGCCTAGTAAATCAAATTCATAGCCTTTTGGGAGTAGACTGTTCGAATTCATTCAATGAACCACCAGGGGGAAATGAGATGACACGTGTCTAAAAGCTTCTGAAAAGTACTATCAATTTGTTTCAGAAACTTTCAGGGTTGTCCTCGGAGTTCAAGTGCTGGGCTTTGTATTTTCGTGGTCAAGaaacatgtcccCTGCACCAGAATCTCCTCTGGGGTACATCCCCCCAGACGGGGGCTGGGGCTGGGTCGTGGTGTTTGGGGCCTTCATCTCCATTGGCTTCTCATATGCCTTCCCCAAAGCCCTCACAGTCTTCTTCAAAGACATCCAGCTGATCTTCGGTGCCTCCTACAGCCAGATAGCATGGATCTCCTCCATTATGCTGGCAGCCATGTATGCCGGTGGACCTATCAGCAGTATTCTGGTGAATCGCTATGGAAGCCGGCCTGTGGTCATAGCTGGTGGAGTGATGTGTGGCGTTGCTATGGTAACTGCTTCTTTCGGCAATACCATTACGCATTTGTACATATGCGTAGGAATCATTGGAGGGTTTGGACTCTCCTTTAACCTCCAGCCGTCCCTCACAATCATTGGGAAGTACTTCCAGGTCAAGAGGCCATTAGCCAATGGGCTGGCCATGGCAGGAAGTCCAGTCTTCCTCTGTACATTAGCACCTATCAACCAGTTCCTGTTTAACCACTTTGGCTGGAGGGGCAGTTTCTTCATCCTGGGAGCTCTGCTGCTCAACTGCTGTGTTGCCGGCTCTCTCATGAGGCCCATTTGTCCAAAGCCAACTGGAGGCCAACTCACGCAGACAAACGGATTCCCCAAGAAACCTCCCACGGACCAGTCTGAGGCCCAGGTGAATGGACACAACACACAGCGTGAGAAAGGCTGTATGGAAAACTTCAACAAGTTTCTGGACCTCTCACTCTTCAAGCACAGGGGCTTTCTGATCTACATCGTAGGGAACACAATGATGTTCTTTGGTTTCTTCGCCCCTGTAGTGTTCCTGGCCCCGTACGCCCGGAGCCATGGCTTTGATGAGTACTCCTccgccttcctcctctccatcatggGCTTCGTGGACATGTTTGCCAGGCCGGGGACTGGGCTGATAGCTAACACTAAGTGGATCAGGCCCAGGATCCAGTACTTCTTCAGCTTTGCCATAATTTATAATGGTATGTGCCACCTGTTGTGCCCCTTGGCCAGTGGGTACTGGGGGCTGGCGGCCTACTCAGTGTTCTTTGGTATAGCGTTTGGCATGGTGTGTGCCCTGCTGTTTGAGACACTCATGGACCTGGTGGGGCCTCAGCGGTTCTCCAGTGCAGTGGGACTGGCCACCATCATAGAGTGCGGCCCCGTGCTCCTGGGACCACCTATAGGAGGAGCCTTGGTGGACACCTTTGGTGACTACAAGTACCTGTACCTCATGTGTGGAGCGGTGATGGTGTTCGCAGGACTCTTCCTCTTTGTTATGAACGTCTACAACTACAGGATGCTGGAGCgggagaggaggcaggaggagggagaggtgaaggagggCTGTGAGAACCAGGAGCAGGGTATGTGGCTGTGTGAGAGGGGAGAGGCTTCCTCAGAGGAAAGAGCAGAAGAGCCTGAGTGTACGAAGGAACAAGACACCCAGGGAGACTGAAACATGCTATCCATCACAACAGTGTATACAAGCACACAATATTGATTTCAGTACATCAATGTATAGGCCTATCTCATATcccctccacccacacacacacatcctatttGATTCTGTTTATGTTGGTTCCTGTTAATGTGTTAACTCTACTACTAACCTTGGTGGAGTACACTCCTGTAGCTGTTTCCCCATGCTGACAAAGGCTGTTTGGAGAGAACTACTTCTGGCTGTATGAGATCAAATAGCAGTGTAATCCTTTCCGGAACGTTATTTATTTGAGCAGCCAGGTGTGCCACCCCCCCTGAGCAGTCCCAGCTAGTATCCAGTTTCTCGTGGTCAGGGACAACTCCAGGCTCTAATAATTCATTAGAAACAAAAAACACCTAATAAATCAATGTAAAGTTACATCGAGTGTTACTCTGTGAATTATGACCATTAAATACATACTTGATATCAATGATGAAACTGTGAACAAACATTTGCAGTTGAGAGGTTTGTCACATCTATGACGAGGATGtaatatttcagccttgtggtaGTCATGAACATTTCACTCTTCTGCCTGTATTGATGTTACAATGGGTGGATGAGGAATGCACTGTTACTGACATTATGATGTCATGTTATGCATCTTGTTCAGGATCCATTTTTCACTTATATGACCAAAAGAAGTGTCTGCTTTAAAATGTTCCCAAACAGATCATAGAATGAATGTAATGAACACGGATTCAGCTGTAATGAAGTTTACGATGACAATGTAATTCATGTCTAGGCTGTAGATTTGCATAAACTGTTTTGTTTTCTTTTAAAGATGCATTTATTGTTTTAAGATGCTAACTGGAAGGACTGTATTTGAAGGACTGTATCCAAAGGTAATATGATTGGGTAGAATACTCAGCAATAAATGCCACCATTCTTATTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704108 lncRNA downstream 44780 50234616 ~ 50234831 (-) True G618867
TU704107 lncRNA downstream 45228 50234101 ~ 50234383 (-) True G618866
TU703987 lncRNA downstream 186641 50092602 ~ 50092970 (-) True G618748
TU703598 lncRNA downstream 465419 49813729 ~ 49814192 (-) True G618369
TU703494 lncRNA downstream 582843 49660035 ~ 49696768 (-) True LOC110527961
TU704150 lncRNA upstream 338 50300475 ~ 50302162 (-) False LOC110527964
TU704153 lncRNA upstream 12700 50312837 ~ 50313066 (-) True G618912
TU704204 lncRNA upstream 50456 50350593 ~ 50350882 (-) True G618963
TU704210 lncRNA upstream 52990 50353127 ~ 50353344 (-) True G618969
TU704285 lncRNA upstream 66857 50366994 ~ 50367204 (-) True G619037
XM_021609612.2 mRNA downstream 343036 49660022 ~ 49936575 (-) False LOC110527961
XR_005052596.1 mRNA downstream 343049 49666452 ~ 49936562 (-) False LOC110527961
XR_005052595.1 mRNA downstream 343052 49660022 ~ 49936559 (-) False LOC110527961
XM_021609604.2 mRNA downstream 846229 49389037 ~ 49433382 (-) False LOC110527956
XM_021609605.2 mRNA downstream 846229 49389037 ~ 49433382 (-) True LOC110527956
XM_021609616.2 mRNA upstream 227 50300364 ~ 50306278 (-) False LOC110527964
LOC110528963 mRNA upstream 209336 50509473 ~ 50540585 (-) False LOC110528963
XR_005052597.1 mRNA upstream 637072 50937209 ~ 50939964 (-) True LOC118965294
XR_005052598.1 mRNA upstream 787152 51087289 ~ 51091164 (-) False LOC118965295
XR_005052599.1 mRNA upstream 787152 51087289 ~ 51091164 (-) True LOC118965295
TU703492 other downstream 343330 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 982363 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1083641 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 1093515 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 1094156 49184424 ~ 49185455 (-) False G617624
TU704151 other upstream 4311 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 656134 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 3005399 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 4772342 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 4864355 55164492 ~ 55172200 (-) False G625472

Expression Profile