RNA id: TU704150


Basic Information

Item Value
RNA id TU704150
length 1688
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC110527964
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50300364 ~ 50306278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGCATTTGTAGATTAGCTTCACACTCGCAGCTGACATCCATATTGTTGTAACAAGTGTCACATGCCAAGACCACTTGAGAAGTTAGACTATTCACTCTCCACATTGGAGAAACAAGCATGgcgtcagatgtgtgtgtgtgtgtggctggcatAAGTGAGACATTTTGAACCATGCAACCGTTTGCTTTGATAGCAACTCAGCAGTCAGGTAAAGAGCAAAGGGATGTGGTTCAGGCAGATGCATTGGTTTGTGTGTGGGCAGCTTGCTGCAGCAGTGTTTTCTGTGGATATAAATTTTTTTTCAGCATGTTTGATATTGATTAGAAGTGTTTGGAGTTAACCTACCTCTTAAATGCCAAAATGCATTTCAGAACTTGGTTCATCTGAAAAGTGGATAAAGTTTCTAGTAGCAATAACTAAGGAAACGTTGATACAATTAGGTTTACCCTTGTGGAAGTGCATTAGCTGTTCAAGCTTAATTTGTGTACTTTAGGGGAAACAGCTCAATATTGGCTGTGTGGCTGGCTGATGTACAGTAGTAGTTTGAGGAGTATAATGGAGATTGTTGGTGTGTAACTTAGCGCAGATCCCAATGGCTGTCATTGTGCCTGTGGGTGGGTGCATCGGATAGTAGTCCTGTGTGTTTAGCCTGGCGACGCAGTGTCTCAAGTCTTACTCATCATTGCACTGAATCACTCCAATAGTTAGTCACTGCAAACTTTACCAAGCACCCTCCTGGACAGAACTACCAGTGTTGGGGCACAACTTTACATCTTTTACACATGAATCCATCTGTACATGCTATCACATGGAGGAAAAACAGAACTTGGTCCTGCTTTTTTGACAGTCTTGTATGTAATAATTGGGCTAACACAGCCATTGAGTGACGGCTCCCTATGGAACTGCAATATTTTCAATGTCAATAATTTCCTCATGCAGGTTGCTATGTCATCTTTGCACTACATATGATTTTCTCGTTTTAAAGCTTTCCCTAAAATCAATCAACAACAAAGCAATCTTGGGATATACAGTTCTGCCTGCAAAGAATTTGAAATGGGGAATAATATGAGAACCCACATTCTAGGTGTGGAGGTGACATGATAAGCTTTTGTAAAGAAAAGGACTGCAGATCATTTGGTGCTTGTTTGATCTGGTCAGAGCAATGCCCTCCTGAAGCCCTCACAGGTGAAAGGGGGTTTGCCCGAATGCCTAAACTCAGTCACTTGGGAACCAGGAATAGACGATTCTCAGGATTTCTATTGATACAGAGTACTGTATTTAAATGTCTTGTGTAATATACTGAACTATACGTTTGCTGTACTTGCACAGTTTttacaaactttttttttttccttttgtaACTTAAAATAGATGTGATTTAATTTCAATGGCTGTATTTCTATTTTCTATATTTAGTTATGGTGGTATTATGTTCTGTATCCTACACATGGATATCGGCACATTATTTGATTTTCTTTCTTTAACAACTTCTCAGTAAGCATTACAGATATGTAACTTCAATGTTGAGTTAATCTCCAACACGATGCAAAGCTTACAATGAATCAGCCAATCGATGTGCTTTCTGTGCAACAGCCGTAGTTGGCCTTGTGCAGCCATATCGAAGCTCATTGAAGACCTGTATGTAAGCATTGTCCAGATGGCAACTAGCAGTGGACTCTtcctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704108 lncRNA downstream 65644 50234616 ~ 50234831 (-) True G618867
TU704107 lncRNA downstream 66092 50234101 ~ 50234383 (-) True G618866
TU703987 lncRNA downstream 207505 50092602 ~ 50092970 (-) True G618748
TU703598 lncRNA downstream 486283 49813729 ~ 49814192 (-) True G618369
TU703494 lncRNA downstream 603707 49660035 ~ 49696768 (-) True LOC110527961
TU704153 lncRNA upstream 10675 50312837 ~ 50313066 (-) True G618912
TU704204 lncRNA upstream 48431 50350593 ~ 50350882 (-) True G618963
TU704210 lncRNA upstream 50965 50353127 ~ 50353344 (-) True G618969
TU704285 lncRNA upstream 64832 50366994 ~ 50367204 (-) True G619037
TU704332 lncRNA upstream 135271 50437433 ~ 50441626 (-) True G619081
XM_021609615.2 mRNA downstream 338 50279611 ~ 50300137 (-) True LOC110527963
XM_021609612.2 mRNA downstream 363900 49660022 ~ 49936575 (-) False LOC110527961
XR_005052596.1 mRNA downstream 363913 49666452 ~ 49936562 (-) False LOC110527961
XR_005052595.1 mRNA downstream 363916 49660022 ~ 49936559 (-) False LOC110527961
XM_021609604.2 mRNA downstream 867093 49389037 ~ 49433382 (-) False LOC110527956
LOC110528963 mRNA upstream 207311 50509473 ~ 50540585 (-) False LOC110528963
XR_005052597.1 mRNA upstream 635047 50937209 ~ 50939964 (-) True LOC118965294
XR_005052598.1 mRNA upstream 785127 51087289 ~ 51091164 (-) False LOC118965295
XR_005052599.1 mRNA upstream 785127 51087289 ~ 51091164 (-) True LOC118965295
XM_021609626.2 mRNA upstream 795295 51097457 ~ 51112064 (-) False LOC110527971
TU703492 other downstream 364194 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 1003227 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1104505 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 1114379 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 1115020 49184424 ~ 49185455 (-) False G617624
TU704151 other upstream 2286 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 654109 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 3003374 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 4770317 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 4862330 55164492 ~ 55172200 (-) False G625472

Expression Profile